SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9867

Length: 1520 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9867

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gb\|AEC09286.1\| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana]	-	-	0.0	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	1-aminocyclopropane-1-carboxylate oxidase, putative	-	-	4.999e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Flavonol synthase.	EC:1.14.11.23	-	1.782e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Flavonoid biosynthesis	00941		1.782e-13	%
Sma3	Biosynthesis of phenylpropanoids	01061		1.782e-13	%
Sma3	Metabolic pathways	01100		1.782e-13	%
Sma3	Biosynthesis of secondary metabolites	01110		1.782e-13	%
Sma3	Flavanone 3-dioxygenase.	EC:1.14.11.9	-	1.808e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	1.808e-08	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.808e-08	%
Sma3	Metabolic pathways	01100	1.808e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.808e-08	%

Source	Gene names
Sma3	AT4g10490; AT4g10500; At2g44800; At4g10490; At4g10500; At5g24530; F3H7.16; F3H7.17; F7L13.70; F7L13.80; GSVIVT00000476001; GSVIVT00000477001; GSVIVT00000578001; GSVIVT00014215001; GSVIVT00015164001; GSVIVT00018086001; GSVIVT00026183001; GSVIVT00031238001;

Source	GOs	Term	Type	e value	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	0.0	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-
Sma3	Signal recognition particle receptor, alpha subunit, N-terminal	IPR007222	-	-
Sma3	Signal recognition particle, SRP54 subunit, helical bundle	IPR013822	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002323963.1	predicted protein [Populus trichocarpa]	0.0	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQA3

Fln msg: your sequence is longer than subject: 419 - 361

Fln protein: MAVAMLDSTKNNDEYDYMKGVKHLVDSGALNSVPIKYVLPQHSRPSAAEIEGGESIPIIDVSALDKTPEERLEAIQQLGQACEVWGFFQVVNHAIPESLISSMLDAAHQFFSLPPEEKMKYETRDVLNPLRYGTSFNVEAEQIFNWRDYLKHFCHPELYTPDNPPIYREVAEQYFKETRKLALRLIGAISESLGLKSDYIQTVFNDCFQMAVLNLYPPCPEPDQTMGIARHSDHGVLTILLENDVGGLQVLHEGHWVAVEPSPNAFIVNVGDHLEILSNGRYKSVEHRAVVNSERTRISIAAPNGPSMDSLVFPAPQLIDENHPPLYKSRSYEEYMRDQQSDKTERQKNFRIGQDSEGRSNMNNPLTSPYVVYSLFCLVFQSTVVRILLPWRSLVQPKYYYYGEVFYYKVVYNLFNCW*

Protein Length: 420

Fln nts: TGCGCATTTTCAGATTCATATAGCTATGGACATAAATAACATATAGTAGCGTTAAAAGGGTAGAAGATCCCAGCTGAACGACAGATATGTTCTGAAGTATTGTATGCGGAGCTAGTATATTCTATCTGGTGCATTC_-_ATGGCTGTTGCCATGCTTGATTCCACGAAGAATAATGACGAATACGATTATATGAAGGGCGTCAAACATCTGGTGGACTCCGGAGCATTGAATTCAGTGCCGATTAAATATGTGTTACCACAGCATAGCCGGCCGTCGGCGGCAGAAATCGAAGGAGGAGAAAGTATACCAATCATAGATGTGTCTGCGCTGGATAAAACCCCCGAGGAACGACTGGAGGCAATCCAGCAACTTGGTCAGGCGTGTGAAGTCTGGGGTTTCTTTCAGGTAGTTAATCATGCCATTCCGGAATCTCTGATTTCCAGTATGTTAGACGCAGCTCATCAGTTCTTCTCTCTCCCGCCTGAAGAGAAGATGAAATATGAGACCAGAGATGTGCTGAATCCGCTAAGATATGGCACGAGCTTCAATGTTGAAGCGGAACAAATTTTCAATTGGAGAGACTATTTGAAGCATTTTTGTCATCCTGAACTGTACACACCTGATAATCCCCCAATTTACAGAGAGGTTGCGGAACAATACTTCAAAGAAACCAGGAAATTGGCTCTGAGATTGATCGGAGCAATATCTGAAAGCCTGGGACTGAAATCGGATTACATACAAACGGTCTTCAACGACTGTTTTCAAATGGCTGTGCTCAACTTATATCCACCGTGTCCAGAGCCAGACCAGACCATGGGCATTGCACGCCATTCTGATCACGGGGTTCTCACTATTTTACTGGAAAATGACGTGGGGGGTCTGCAAGTGCTGCATGAGGGGCATTGGGTGGCCGTTGAGCCCTCTCCCAACGCCTTCATTGTGAACGTTGGTGACCATCTAGAGATTTTAAGCAACGGGAGATACAAGAGCGTGGAGCACAGAGCAGTCGTCAACTCGGAGAGAACAAGAATTTCAATTGCAGCACCAAATGGGCCTTCCATGGATTCTTTAGTATTTCCTGCTCCACAGCTAATAGATGAAAATCATCCACCATTGTATAAATCCAGATCGTATGAAGAATATATGAGAGATCAGCAAAGCGACAAGACTGAGAGGCAAAAGAACTTTAGAATCGGTCAAGATAGCGAAGGGCGAAGCAACATGAACAACCCATTAACCAGCCCATACGTTGTATACTCTCTATTTTGTCTTGTATTCCAGTCTACAGTAGTTAGAATATTATTACCATGGAGAAGTCTCGTTCAACCAAAATATTATTACTATGGAGAAGTCTTCTACTACAAAGTTGTCTATAATTTGTTCAATTGCTGGTAG___ATGTTTAAATGTTAGAAGGTAATATTGCTTTAGCATTATGGACCTGTCCAGTGTTGTCCTACCTATTGCTTTAGCATTATGGACCTGTCCAGTGTTGTCCTTAGGTAGGTAGCAACAGGGAGAGTAT

Fln Alignment:

Contig9867___MAVAMLDSTKNNDEYDYMKGVKHLVDSGALNSVPIKYVLPQHSRPSAAEIEGGESIPIIDVSALDKTPEERLEAIQQLGQACEVWGFFQVVNHAIPESLISSMLDAAHQFFSLPPEEKMKYETRDVLNPLRYGTSFNVEAEQIFNWRDYLKHFCHPELYTPDNPPIYREVAEQYFKETRKLALRLIGAISESLGLKSDYIQTVFNDCFQMAVLNLYPPCPEPDQTMGIARHSDHGVLTILLENDVGGLQVLHEGHWVAVEPSPNAFIVNVGDHLEILSNGRYKSVEHRAVVNSERTRISIAAPNGPSMDSLVFPAPQLIDENHPPLYKSRSYEEYMRDQQS
A9NQA3______________MATAVLESTKNVDGYDYMKGVKHLVDSGALNSVPIKYVFPQDSRPSAAEIAEGESIPIIDLSAMDKSPEERLEAIKYLGQACAHWGFFQVVNHGIQESLITSMLEAAHQFFSLSSQEKLKYESTDVLNPVRYGTSFNAKVDQFFNWRDYLKHFSYPQLHTPDNPPNYREVAGEYFKETRKLALRLMGAISESLGLKSDYIQTVFKDGIQIGVLNFYPQCPEPDETMGIAPHSDHGGLTILLQNDVGGLQVRHEGRWVAVEPSPNAFVVNVSDHLEIVSNGRYKSVEHRAVVNAERARISIAAPNGPAMDAPIFPAPQLVDETHPPLYKSMLYGEYLRRQQS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
510		20	80		0.995493
512			40	60	1.0
538		85		14	0.993533
539	14		85		0.993533
540	85		14		0.993533
567		28		71	1.0
612		14		85	0.993533
630		80	20		0.995493
652	80		20		0.995493
692	16		83		0.994512
725	88		11		0.923564
728	11		88		0.923564
782	90		10		0.90298
997	85		14		0.993533
1292	87	12			0.992554
1331		20		80	0.995493
1334			20	80	0.995493
1341	80			20	0.995493
1360		80	20		0.995493
1367	20	80			0.995493
1371	20		80		0.995493
1396	25		75		0.996473
1400			75	25	0.996473
1420		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain