SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9846

Length: 1378 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9846

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00854, PTR2, POT family	-	-	7.00005e-41	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Chromosome chr18 scaffold_122, whole genome shotgun sequence	-	-	1.164e-19	-

Source	Gene names
Sma3	At1g22540; At1g62200; At1g72115; At1g72120; At1g72140; At2g02040; At2g37900; At3g54140; At5g01180; B1026C12.10; B1065G12.20; B1377B10.10; F12K8.12; F14H20.11; F19K23.13; F24B22.100; F28P5.2; F5K20_260; F7J8_160; GSVIVT00001825001; GSVIVT00001827001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	POX	IPR006563	-	-
Sma3		IPR012287	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G53960.1	Major facilitator superfamily protein chr3:19978306-19980886 REVERSE LENGTH=602	47%
RefSeq	Arabidopsis thaliana	NP_190964.2	major facilitator protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002309091.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ68

Fln msg: your sequence is shorter than subject: 358 - 407

Fln protein: TPFYRHVVPGGSPITRIARVLVAAFLNRNKRLPSDTGMFHENWDVEDRKSGQRLLSRTDNFKWLDKAAIAVEADDNADDTTGRRSIRSQEPSPWRVCTVTQVEETKLLLRMVPIWLCCLVFGMCISQQTTFFVKQGVTMDRRMGSHFEIPPPSLLTFASGSMIIFAVIYDRFLVPVAKKITGHERGITLLQRIGIGMFVSILCMVSAALVETRRVDMAKKYHGVKGVPVRLPISVFWLVPQFVLLGIADVFTLVGLQEYFYDQGPDGMRSLGIAFYLSVVGVGSFLSTLLITIVEKVTVIGGHESWFTTNPKGLHWDYFYWLLAVLGTLNLCAYVCAARRYTYKQVKAVEESVTAKD*

Protein Length: 359

Fln nts: TACTCCATTCTACAGGCATGTGGTGCCAGGAGGCAGTCCTATCACGCGCATAGCTCGGGTATTGGTGGCTGCTTTTCTCAATAGAAACAAAAGGCTTCCTTCTGACACGGGGATGTTTCACGAGAATTGGGACGTGGAAGACAGAAAATCAGGACAGAGGCTGCTATCACGTACAGATAACTTCAAGTGGTTGGACAAAGCAGCTATAGCAGTAGAAGCCGACGATAATGCCGATGATACCACGGGAAGAAGAAGCATTAGATCGCAGGAACCAAGTCCCTGGAGAGTTTGCACAGTGACCCAAGTAGAAGAAACCAAGCTTTTACTGAGAATGGTGCCTATCTGGTTATGCTGCCTCGTCTTTGGAATGTGCATATCCCAGCAAACAACATTCTTCGTGAAGCAAGGCGTGACCATGGACAGAAGAATGGGTTCCCATTTCGAAATCCCACCACCTTCTCTCCTGACATTTGCTTCTGGTTCTATGATCATTTTCGCGGTAATCTACGACAGGTTTCTGGTTCCAGTGGCCAAAAAAATCACAGGCCATGAACGCGGAATAACTCTTCTCCAGAGAATTGGAATAGGCATGTTTGTATCTATTCTCTGCATGGTCAGTGCAGCTCTGGTGGAAACAAGAAGAGTGGATATGGCAAAGAAATACCATGGAGTTAAAGGGGTTCCTGTAAGACTCCCTATAAGTGTTTTCTGGTTGGTTCCTCAGTTTGTTTTGCTGGGAATAGCAGATGTTTTTACACTGGTAGGGTTGCAGGAATATTTTTATGACCAGGGCCCAGATGGCATGAGAAGCTTGGGAATTGCCTTCTATCTCAGCGTTGTTGGAGTTGGGAGCTTTCTCAGTACTCTCCTCATCACCATTGTTGAGAAAGTTACTGTAATTGGAGGACATGAGAGCTGGTTTACTACCAATCCCAAGGGACTTCACTGGGATTATTTCTACTGGCTTTTGGCTGTTCTGGGTACTCTGAATCTGTGTGCTTACGTCTGTGCTGCACGAAGATATACATACAAGCAAGTAAAAGCAGTCGAAGAGAGCGTGACTGCCAAAGATTGA___AGCCATTAACAGAGGGCAGAGGCCGATGCAAATTATATAACCAGGGTGAGTATAGAATATGCAGCTTGCAGCTTTGTTTTGGCTATTGATTATGTAGTGTGATCTTAATAATACTGGGGCCCAGAGGCTTTTGATGATGGTATCTTGTAACTGTTTTTGGCGAAGTGATTTATCACAAAGAGTGTTTCGAATTAGTGATCTATCACAGGAGTGTTTTGAATTAGTGATTTATAATGTGTGTTTTAGCAATACACTTATTTATAATTAATCTAAAATTCTATAAACAACATCCTATAAATTTGT

Fln Alignment:

Contig9846___TPFYRHVVPGGSPITRIARVLVAAFLNRNKRLPSDTGMFHENWDVEDRKS-----GQRLLSRTDNFKWLDKAAIAVEADDNAD-DTTGRRSIRSQEPSPWRVCTVTQVEETKLLLRMVPIWLCCLVFGMC-ISQQTTFFVKQGVTMDRRMGSHFEIPPPSLLTFASGSMIIFAVIYDRFLVPVAKKITGHERGITLLQRIGIGMFVSILCMVSAALVETRRVDMAKKYHGVKGVPVRLPISVFWLVPQFVLLGIADVFTLVGLQEYFYDQGPDGMRSLGIAFYLSVVGVGSFLSTLLITIVEKVTVIGGHESWFTTNPKGLHWDYFYWLLAVLGTLNLCAYVCAARRYTYKQV
B8LQ68______________TPFYRHKLPGGSPITSIAQVVVAAIRKRNISMPSDVSLLYEDRDVESIKSESIKPGQRHLSHTDNFQFLDKAAIMVQNSSEWNTDTQG-----SAKPNPWKVCTVTQVEETKLILRMVPIWFSSLTFGLAAVSQNATFFIRQGHTMDRSMGSHFKIPAVSLGVFSTIFGLAFVIIYDRCMVPLARRITGNERGITVLQRIGIGLFFSLLCMVIAALTEKKRIHAAETHGLLDSPTTTIPMSAFWLVPQFVLAGIADVFTLVGLQEYFYNEAPDSMRSLGIAFYVSVLGVASFLNGLVITLVESMSKRGGHEGWLVNNLNRCKLEYFYWLLAIFSAINLCCYVFIANIYNYKKV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
736	14	85			0.993533
799		14	85		0.993533
836	12		87		0.992554
837		87		12	0.992554
839			12	87	0.992554
840			12	87	0.992554
912		11		88	0.923564
968		14		85	0.993533
1015			80	20	0.999996
1080		80	20		0.999996
1277		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain