SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9842

Length: 955 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9842

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9RIU7_RICCO	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Multidrug resistance pump, putative	-	-	6.701e-30	-

Source	Gene names
Sma3	117M18_23; AT1G61890; AT4G21910; AT4g00350; AT4g25640; A_IG005I10.20; At1g12950; At1g47530; At1g61890; At3g21690; At3g26590; At3g59030; At4g00350; At4g21910; At4g25640; At5g38030; F16N3.20; F17J16_80; F5I10.20; F8K4.9; GSVIVT00009468001; GSVIVT00009469001

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	solute:hydrogen antiporter activity	GO:0015299	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	-
Sma3	maintenance of seed dormancy	GO:0010231	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G25640.2	DTX35 detoxifying efflux carrier 35 chr4:13076576-13078965 REVERSE LENGTH=514	62%
RefSeq	Arabidopsis thaliana	NP_001190838.1	detoxifying efflux carrier 35 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002302594.1	predicted protein, partial [Populus trichocarpa]	64%

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
524	12			87	0.992554
530			87	12	0.992554
532	11		88		0.923564
535	22	11	66		0.999999
538	11			22	0.999999
540		87	12		0.992554
541	12	12		75	0.975346
542	87	12			0.992554
543		87		12	0.992554
545			12	87	0.992554
546			87	12	0.992554
547	87	12			0.992554
549	12			87	0.992554
550	87		12		0.992554
551	12			87	0.992554
552	50	12	37		1.0
553		87	12		0.992554
555	75			12	0.975346
557		87		12	0.992554
558		12		87	0.992554
571			87	12	0.992554
589	14		85		0.993533
642	60		40		1.0
656	20		80		0.995493
657		20	80		0.995493
658	20	80			0.995493
660		80		20	0.995493
667	50	50			1.0
683	75		25		0.996473
696	27	72			1.0
729	27			72	1.0
730		27		72	1.0
789	57		42		1.0
792	42			57	1.0
805	50		50		1.0
807	50	50			1.0
872	33		66		0.997452
877	33	66			0.997452
878		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain