SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9819

Length: 2285 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene9819
TGCTAAAATTAGAAGAGAAGAGAAAACATAGGATCGAACTGAGATCCAATACTTGTGCATTGTGACCACATGTTCAGTAAATCTCCAGGGACTGAAGAGGCATTCCATGCAGCAACACAATGGATTATCCTTTGGTTCCAATACAAACACGTTGCAAGGACTTAAATATAGGTTTCATAAACAGTGAAAATAGCTACATTTATGAAACAAATGGGATTTTCCTTTCTCCGATCTGCAATAATTAATGGGAGGGTACTTGGCCTCTGACATCGGTATCCTGATTCTGTGAGTGATTTGTTCGTAGAATTGATTACTGGCGTGGCTTCAAACAGTAATATATACATATATACTTTGAGGCGGTTCTCACCTACAATGCAGGTCCACATTTCTCCTAGCATGAGACGCATCACCATTTCAACTACCAATGGCTTCCTGGATTTTACAAAGGTTAAGGGCGCTGCACGCCATCTGTCCTATAGACGTATATTCTCTACTATATTAATTCTAGCCTGCTTGTTCCCATTTCTCTTCATTTTAACTGCAGTTGTTACTCTCGAGGGCGTCAACATCTGTTCCTCCCTTGATTGCCTAGGCAGAAGATTGGGACCGAGGCTTTTGGGGAACAGAGATGCTTCACTTAGAGCTACAGAAGAAATATACCAGTTCCTTATGCAAGCAAACAATGAAGCACTTCCAGAAGGATTAACAGTCCCAGAGTCATTCAGTGATCTTATGGCCGATATGAGGGCCAATCCATATGATGCCAAGACATTTGCTTTGAAGATGAAAGCAATGGTACAGCAAATGGAACACAAAGCCCGGGCAGCAAAACTACAGGAATATTTGTACAGACATTTTGCATCAAGTGGTATTCCAAAAGGCATGCATTGCCTCTCTCTTAGGTTGGCAGATGAGTATTCCTCCAATGTGGAAGCCCGCAGGCAGCTACCATCTCCTGAATTAGTTCCTCGGCTTACAGACAACTTGTATAATCATTTTGTGGTGGCTACTGACAATGTACTTGCAGCATCTGTAGTAGTCTCATCAACAGTGAGGAATTCTGTAAAGCCAGAAAAGATAGTTTTTCATATCATTACAGATAGGAAGACATATGCAGCCATGCATGCATGGTTTGCTTTGCACTCTTTTCGTTCTGCCACTATTGAGGTGAAAGGTTTGCACCAATTCGATTGGTTGACAAAAGATAATGTCCCTGTGTTGGAAGCCATGGAAACTCATCTTGAAATTCGAAGATACTACCATGGGGACCATGCGATTGGGGCAAATCTTAATGACTCTCCAAACATCTTAGCTGCAAAACTGCAAGCTCGAAGCCCAAAATATATATCAATAATGAACCACCTGCGAATATATCTTCCAGAGCTTTTCCCAAACCTTCAGAAGGTTGTTTTCCTGGATGATGATGTAGTGGTTCAGCGCGACTTATCTCCACTATGGGATATTGATCTGCAAGGCAAGGTCAATGGGGCAGTAGAAACATGCAGGAGCAGTAACCCATGGGTGAGGTCAAAGAGTTTCAGAAGTTATCTCAATTTCTCTCATCCTCTTGTAGCAAGCAATTTCGATGCAAACCAATGTGCATGGGCATATGGTATGAATTTATTTGATCTGCAAGCCTGGAGAAGGACAAACATCAAAGACATTTATCATTATTGGCTTAAAGAAAATCTGAATTCAAAATTAACACTCTGGCGTTTGGGCACTTTACCACCTGCATTAATTGCATTTAATGGTCACGTTCATCCCATTGATCCTTCTTGGCACATGCTGGGATTGGGCTATCAATCTAAAAGCAATCAAGACTCTCTCCAAACAGCTGCTGTAATTCACTATAATGGCCAGGCAAAACCATGGCTAGATATTGCATTTCCCAAGTTAAAACCTTTCTGGACAAAATATGTAGATTACTCTGATGAATTTATTAGAAATTGTGATATTGTGGAGTCATAGTTTGAACACTTCTGCTCGATTCGCTGTATTGATTCTTTTGAAGTGTAGGCGGGGTCTGCTGTGGGTGAAGGTGAACTATGCAGTAATTTTGCCCACCTTCCAACCACATAAAGTAGATAGATGAAGGCTCAATATTACATGAGCCTCTCTTATCATTTGTCTATACAGATATATTTTTTTGCATCAGAAAAAAGTTGAAGATGTGACAAGATAAGCTCCTATTGGAAGATTTTGTAAGCAAAATTTCATTCAAAATTCTATTCATTTGTAACAGTGGAATCATCTTTCAATGAAAAATATCCGAACTTTTTGAT

Ace file of the UniGene sp_v3.0_unigene9819 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Galacturonosyltransferase GAUT12/13/14/15-like protein n=1 Tax=Selaginella moellendorffii RepID=D8SK68_SELML	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	23%
Sma3	Glycosyltransferase QUASIMODO1, putative	-	-	1.651e-27	-

Source	Gene names
Sma3	AT4g38270; At1g18580; At1g18580/F25I16.8; At2g20807; At2g20810; At3g01040; At3g02350; At3g25140; At3g58790; At3g61130; At4g38270; At5g15470; At5g15470/T20K14_80; At5g47780; At5g54690; B1142B04.29; F11A12.4; F11A12_103; F22I13.40; GSVIVT00000005001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	cell adhesion	GO:0007155	Biological Process	-
Sma3	homogalacturonan biosynthetic process	GO:0010289	Biological Process	-
Sma3	glucuronoxylan biosynthetic process	GO:0010417	Biological Process	-
Sma3	xylan biosynthetic process	GO:0045492	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G01040.1	GAUT13 galacturonosyltransferase 13 chr3:9392-11979 FORWARD LENGTH=533	67%
RefSeq	Arabidopsis thaliana	NP_001118545.1	alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002324094.1	glycosyltransferase [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYU2

Fln msg: your sequence is longer than subject: 533 - 381

Fln protein: MQVHISPSMRRITISTTNGFLDFTKVKGAARHLSYRRIFSTILILACLFPFLFILTAVVTLEGVNICSSLDCLGRRLGPRLLGNRDASLRATEEIYQFLMQANNEALPEGLTVPESFSDLMADMRANPYDAKTFALKMKAMVQQMEHKARAAKLQEYLYRHFASSGIPKGMHCLSLRLADEYSSNVEARRQLPSPELVPRLTDNLYNHFVVATDNVLAASVVVSSTVRNSVKPEKIVFHIITDRKTYAAMHAWFALHSFRSATIEVKGLHQFDWLTKDNVPVLEAMETHLEIRRYYHGDHAIGANLNDSPNILAAKLQARSPKYISIMNHLRIYLPELFPNLQKVVFLDDDVVVQRDLSPLWDIDLQGKVNGAVETCRSSNPWVRSKSFRSYLNFSHPLVASNFDANQCAWAYGMNLFDLQAWRRTNIKDIYHYWLKENLNSKLTLWRLGTLPPALIAFNGHVHPIDPSWHMLGLGYQSKSNQDSLQTAAVIHYNGQAKPWLDIAFPKLKPFWTKYVDYSDEFIRNCDIVES*

Protein Length: 534

Fln nts: TGCTAAAATTAGAAGAGAAGAGAAAACATAGGATCGAACTGAGATCCAATACTTGTGCATTGTGACCACATGTTCAGTAAATCTCCAGGGACTGAAGAGGCATTCCATGCAGCAACACAATGGATTATCCTTTGGTTCCAATACAAACACGTTGCAAGGACTTAAATATAGGTTTCATAAACAGTGAAAATAGCTACATTTATGAAACAAATGGGATTTTCCTTTCTCCGATCTGCAATAATTAATGGGAGGGTACTTGGCCTCTGACATCGGTATCCTGATTCTGTGAGTGATTTGTTCGTAGAATTGATTACTGGCGTGGCTTCAAACAGTAATATATACATATATACTTTGAGGCGGTTCTCACCTACA_-_ATGCAGGTCCACATTTCTCCTAGCATGAGACGCATCACCATTTCAACTACCAATGGCTTCCTGGATTTTACAAAGGTTAAGGGCGCTGCACGCCATCTGTCCTATAGACGTATATTCTCTACTATATTAATTCTAGCCTGCTTGTTCCCATTTCTCTTCATTTTAACTGCAGTTGTTACTCTCGAGGGCGTCAACATCTGTTCCTCCCTTGATTGCCTAGGCAGAAGATTGGGACCGAGGCTTTTGGGGAACAGAGATGCTTCACTTAGAGCTACAGAAGAAATATACCAGTTCCTTATGCAAGCAAACAATGAAGCACTTCCAGAAGGATTAACAGTCCCAGAGTCATTCAGTGATCTTATGGCCGATATGAGGGCCAATCCATATGATGCCAAGACATTTGCTTTGAAGATGAAAGCAATGGTACAGCAAATGGAACACAAAGCCCGGGCAGCAAAACTACAGGAATATTTGTACAGACATTTTGCATCAAGTGGTATTCCAAAAGGCATGCATTGCCTCTCTCTTAGGTTGGCAGATGAGTATTCCTCCAATGTGGAAGCCCGCAGGCAGCTACCATCTCCTGAATTAGTTCCTCGGCTTACAGACAACTTGTATAATCATTTTGTGGTGGCTACTGACAATGTACTTGCAGCATCTGTAGTAGTCTCATCAACAGTGAGGAATTCTGTAAAGCCAGAAAAGATAGTTTTTCATATCATTACAGATAGGAAGACATATGCAGCCATGCATGCATGGTTTGCTTTGCACTCTTTTCGTTCTGCCACTATTGAGGTGAAAGGTTTGCACCAATTCGATTGGTTGACAAAAGATAATGTCCCTGTGTTGGAAGCCATGGAAACTCATCTTGAAATTCGAAGATACTACCATGGGGACCATGCGATTGGGGCAAATCTTAATGACTCTCCAAACATCTTAGCTGCAAAACTGCAAGCTCGAAGCCCAAAATATATATCAATAATGAACCACCTGCGAATATATCTTCCAGAGCTTTTCCCAAACCTTCAGAAGGTTGTTTTCCTGGATGATGATGTAGTGGTTCAGCGCGACTTATCTCCACTATGGGATATTGATCTGCAAGGCAAGGTCAATGGGGCAGTAGAAACATGCAGGAGCAGTAACCCATGGGTGAGGTCAAAGAGTTTCAGAAGTTATCTCAATTTCTCTCATCCTCTTGTAGCAAGCAATTTCGATGCAAACCAATGTGCATGGGCATATGGTATGAATTTATTTGATCTGCAAGCCTGGAGAAGGACAAACATCAAAGACATTTATCATTATTGGCTTAAAGAAAATCTGAATTCAAAATTAACACTCTGGCGTTTGGGCACTTTACCACCTGCATTAATTGCATTTAATGGTCACGTTCATCCCATTGATCCTTCTTGGCACATGCTGGGATTGGGCTATCAATCTAAAAGCAATCAAGACTCTCTCCAAACAGCTGCTGTAATTCACTATAATGGCCAGGCAAAACCATGGCTAGATATTGCATTTCCCAAGTTAAAACCTTTCTGGACAAAATATGTAGATTACTCTGATGAATTTATTAGAAATTGTGATATTGTGGAGTCATAG___TTTGAACACTTCTGCTCGATTCGCTGTATTGATTCTTTTGAAGTGTAGGCGGGGTCTGCTGTGGGTGAAGGTGAACTATGCAGTAATTTTGCCCACCTTCCAACCACATAAAGTAGATAGATGAAGGCTCAATATTACATGAGCCTCTCTTATCATTTGTCTATACAGATATATTTTTTTGCATCAGAAAAAAGTTGAAGATGTGACAAGATAAGCTCCTATTGGAAGATTTTGTAAGCAAAATTTCATTCAAAATTCTATTCATTTGTAACAGTGGAATCATCTTTCAATGAAAAATATCCGAACTTTTTGAT

Fln Alignment:

Contig9819___LRIYLPELFPNLQKVVFLDDDVVVQRDLSPLWDIDLQGKVNGAVETCRSSNPWVRSKSFRSYLNFSHPLVASN-FDANQCAWAYGMNLFDLQAWRRTNIKDIYHYWLKENLNSKLTLWRLG-----TLPPALIAFNGHVHPIDPSWHMLGLGYQSKSNQDSLQTAAVIHYNGQAKPWL
A9NYU2______________LPFYIPKIYQNLRRFIYAVPDIIVKGKVEELFQVNLTNSPVAAVEDCSHNFEYINAKS-------SRPWVAQTPYAKNTCILDHSVLLVNVELLAKENFMEVTK-WKK--------LFHTGGRNDQSDQAIMLALNGNYTKLDASWNSRESRF---SGIDS--DVKIFHFDGEKKPWL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
136	33	33			0.997753
137	33	66			0.997452
389	10			90	0.90298
721	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain