SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9805

Length: 1999 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene9805
CGAACCACACATGGAAAGATTTAAGAGAATATATATTTATCTATCGCGGGAGCTAAGATTTCCAGGCTTTTTCCCATGATTCCACAAGACCATGGACCTGCCTATACAAAGGTACCTGTTCACATGGGAAATTCTGAAGTGTAATAAGAAAGAAATTTGAAAGTGAAACAGAAGAATGTATGGGCAATCAAATTCCCCATGAGAATTGGCAGCAGCACCTTTCAACTAATTCCGTGGACTTCACACCAGATATTCTGAGAATTTACAGATGAGTCTAGAGCCGCTCTCCTACTCAGGTTTTTTCATTTAATGTGTTCCGGCATCTAGCGATGAGAGATTGACATGGCAATGGACAACGGAGAGCTCGAGTTCTCTGATGAAGCCTTTCCTAATTCTGACCATGCTACCGGCTTTCCCATGATTTCATCCTTGGATACCATTCTGGATGACGCTACGGAGACAAAAACACACACTTGCACCCACACTCATACTTGCAATCCCCCAGGACGCGACAAACCACATACTCATACTTGTTATCACAGCCATACCCAATTTTTCTCTACAGAGCAAGCAGATCAATTGGGTGGGACATCAGAGTCATTGGCAAAGAAGAAAAGGCCTTCTGGAAACCGAGAAGCGGTCAAAAAGTACAGAGAGAAGCAAAAAGCACATACTGCTTATTTAGAAGATAAAGTGCAAAAGTTGCGTTCATTAAACCAGCAGCTATGGAGGAAGGTACAAGACCAGGTAGCCCTTGAGGCTGAGGCGGAAAGATTGAGGGCAATTTTATTTGAATTCAAGGGAAAAATAGATTCCGAGTTAGGCTCAGTTCCTTATCAAAAGCCATGTAGTGGAAATGTGAAAGGGGGAGACTGCAGTGTTCAACCGCTTAATGGTGATCACAATCTTCGTTGTGAAACTGACGTGCCTTGCTTTCATCCACCTTTTTAAATGTCTAAGACTGATAATGATTCCTAGGTGGTCAAAATGATAATATAATGATATATGAGATAGTTTGAGAAATTACTAATTCTGAGCATTAAGTATTTACTCTGGATGGAGATTTGGGGCAGTACTGTTTAAGACCGAAAGGTATAGAGACAAGTGATTTTATGGTAACTAAAACTATGTCTTCGACAGAGAATCTGACCATGCATACAGGATTTGTCTTTGGGTAGCAGCATTGGAAGTATTAGCTCTGTTTAATTGAAGAATTTGTAAATAATAGAAGTAGAGATCCATGTGAAACATGTTTCAAATGAGGTAACGTTGCTGCAGTCCATCCCAACTTAGTTCTGTGAATAACAAAACCTACAAAACCTCAGAGGATATGCCCAGAAGGAAAGGTTGACATTCTTACAAGGGTACCTGTATATCAAGGATTCTTTACAAGTATAGTGGAAGCTTTGAATGCTACTATGTACTCAACAGGGAATCTCATCACACATACAGGATTGGTCTCTGAGTAGCAGCATTTGAGTATTGGCTTTGTTTAAATGTAAAATCTCTAAATAATAGAAGGTAATGAAGAGGAAAAATGTTGTGCCAGTCTAAGCCAACTAATCAATGAATAACAAAATCTTGGAGCATATGCCTAGATGGAAAGTTTGATATTCTTAAAATGGTACTTGGATATCAATGACTCTTTCCATGTATAATGCTACTAGCTCTGTGGAGCCTGTATTTACTGTTGAAATGTGCAACATGAAAAGTAGATCCTTTACTTTTGGCAGAGCAGCATCAGAAACAAAGCAATGTGGAAGAGACATGAAAAGTAGATCAGGTTGGTATCTTCTTTTAACCCATTGATACAGTTGACACATGTATCTGTATGTATCCTAGTGTATATCCGGTTTGCCATATGTTCACCTTTACTGATATTAGTGGGATTATTGAGAGAAAGAGATACTTGGGAGGTGAGATTGAAAGTATATACTAGTATTTTGAACTGCCATGTATTTATTAATTTTGATGGTGCAATTGTGTAAATTCAGAGTGT

Ace file of the UniGene sp_v3.0_unigene9805 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	bZIP_2 domain containing protein	-	-	5.0e-10	35%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	51%

Source	Gene names
Sma3	AT4g35040; At2g16770; At3g51960; At3g51960/F4F15_70; At4g35040; F4F15.70; GSVIVT00010221001; GSVIVT00036120001; M4E13.100; OJ1540_H01.8; OJ1579_G03.9; Os05g0495200; Os06g0716800; OsI_04102; OsI_20459; OsI_24474; OsI_35035; OsI_37401; OsJ_03780; OsJ_17245;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Basic leucine zipper	IPR011700	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G35040.1	bZIP19 Basic-leucine zipper (bZIP) transcription factor family protein chr4:16680821-16681805 FORWARD LENGTH=261	7.0e-38	45%
RefSeq	Arabidopsis thaliana	NP_567974.1	basic leucine zipper transcription factor-like protein [Arabidopsis thaliana]	9.0e-38	45%
RefSeq	Populus trichocarpa	XP_002332415.1	predicted protein [Populus trichocarpa]	0.0	53%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: A5C0C1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 57 aas, putative chimeric sequence, your sequence is shorter than subject: 203 - 260

Fln protein: MAMDNGELEFSDEAFPNSDHATGFPMISSLDTILDDATETKTHTCTHTHTCNPPGRDKPHTHTCYHSHTQFFSTEQADQLGGTSESLAKKKRPSGNREAVKKYREKQKAHTAYLEDKVQKLRSLNQQLWRKVQDQVALEAEAERLRAILFEFKGKIDSELGSVPYQKPCSGNVKGGDCSVQPLNGDHNLRCETDVPCFHPPF*

Protein Length: 204

Fln nts: CGAACCACACATGGAAAGATTTAAGAGAATATATATTTATCTATCGCGGGAGCTAAGATTTCCAGGCTTTTTCCCATGATTCCACAAGACCATGGACCTGCCTATACAAAGGTACCTGTTCACATGGGAAATTCTGAAGTGTAATAAGAAAGAAATTTGAAAGTGAAACAGAAGAATGTATGGGCAATCAAATTCCCCATGAGAATTGGCAGCAGCACCTTTCAACTAATTCCGTGGACTTCACACCAGATATTCTGAGAATTTACAGATGAGTCTAGAGCCGCTCTCCTACTCAGGTTTTTTCATTTAATGTGTTCCGGCATCTAGCGATGAGAGATTGAC_-_ATGGCAATGGACAACGGAGAGCTCGAGTTCTCTGATGAAGCCTTTCCTAATTCTGACCATGCTACCGGCTTTCCCATGATTTCATCCTTGGATACCATTCTGGATGACGCTACGGAGACAAAAACACACACTTGCACCCACACTCATACTTGCAATCCCCCAGGACGCGACAAACCACATACTCATACTTGTTATCACAGCCATACCCAATTTTTCTCTACAGAGCAAGCAGATCAATTGGGTGGGACATCAGAGTCATTGGCAAAGAAGAAAAGGCCTTCTGGAAACCGAGAAGCGGTCAAAAAGTACAGAGAGAAGCAAAAAGCACATACTGCTTATTTAGAAGATAAAGTGCAAAAGTTGCGTTCATTAAACCAGCAGCTATGGAGGAAGGTACAAGACCAGGTAGCCCTTGAGGCTGAGGCGGAAAGATTGAGGGCAATTTTATTTGAATTCAAGGGAAAAATAGATTCCGAGTTAGGCTCAGTTCCTTATCAAAAGCCATGTAGTGGAAATGTGAAAGGGGGAGACTGCAGTGTTCAACCGCTTAATGGTGATCACAATCTTCGTTGTGAAACTGACGTGCCTTGCTTTCATCCACCTTTTTAA___ATGTCTAAGACTGATAATGATTCCTAGGTGGTCAAAATGATAATATAATGATATATGAGATAGTTTGAGAAATTACTAATTCTGAGCATTAAGTATTTACTCTGGATGGAGATTTGGGGCAGTACTGTTTAAGACCGAAAGGTATAGAGACAAGTGATTTTATGGTAACTAAAACTATGTCTTCGACAGAGAATCTGACCATGCATACAGGATTTGTCTTTGGGTAGCAGCATTGGAAGTATTAGCTCTGTTTAATTGAAGAATTTGTAAATAATAGAAGTAGAGATCCATGTGAAACATGTTTCAAATGAGGTAACGTTGCTGCAGTCCATCCCAACTTAGTTCTGTGAATAACAAAACCTACAAAACCTCAGAGGATATGCCCAGAAGGAAAGGTTGACATTCTTACAAGGGTACCTGTATATCAAGGATTCTTTACAAGTATAGTGGAAGCTTTGAATGCTACTATGTACTCAACAGGGAATCTCATCACACATACAGGATTGGTCTCTGAGTAGCAGCATTTGAGTATTGGCTTTGTTTAAATGTAAAATCTCTAAATAATAGAAGGTAATGAAGAGGAAAAATGTTGTGCCAGTCTAAGCCAACTAATCAATGAATAACAAAATCTTGGAGCATATGCCTAGATGGAAAGTTTGATATTCTTAAAATGGTACTTGGATATCAATGACTCTTTCCATGTATAATGCTACTAGCTCTGTGGAGCCTGTATTTACTGTTGAAATGTGCAACATGAAAAGTAGATCCTTTACTTTTGGCAGAGCAGCATCAGAAACAAAGCAATGTGGAAGAGACATGAAAAGTAGATCAGGTTGGTATCTTCTTTTAACCCATTGATACAGTTGACACATGTATCTGTATGTATCCTAGTGTATATCCGGTTTGCCATATGTTCACCTTTACTGATATTAGTGGGATTATTGAGAGAAAGAGATACTTGGGAGGTGAGATTGAAAGTATATACTAGTATTTTGAACTGCCATGTATTTATTAATTTTGATGGTGCAATTGTGTAAATTCAGAGTGT

Fln Alignment:

Contig9805___MDNGELEFSDEAF-PNSDHATGFPMISSLDTILDDAXXXXXXXXXXXXTCNPPGRDKPHTHTCYHSHTQFFSTEQADQLGGTSESLAKKKRPSGNREAVKKYREKQKAHTAYLEDKVQKLRSLNQQLWRKVQDQVXXXXXXXXXXAILFEFKGKIDSELGSVPYQKPCSGNV--KGGDCSVQPLNGDHNLRCETDVPCFHPPF*MSKTDNDS*VVKMII
A5C0C1______________MDDGEVELSDHVLLSNPNSSSNFQGSTPIDSFLDD-FLKNTRTCTHTHTCNPPGPDAAHTHTCYHTHTQVFASEEDEVPNNKEHXISKVRRPSGNREAVRKYREKKKAHTAYLEEEVKKLRLLNQQLVKKLQGQAVLEAEVLRLRSLLLDLRGKIDNELGVFPFQKQCNTTLSFKEGDCGLQSASGAIDPRCEMDLPCFHPHVGSSSQASISGSGKMVV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
84		80		20	0.995493
173	80		20		0.995493
1467	11		88		0.923564
1508		10		90	0.90298
1549	11	88			0.999937
1552	88	11			0.999937
1553			88	11	0.999937
1554	11	88			0.999937
1555		11	88		0.999937
1625	10			90	0.90298
1629		90		10	0.90298
1676		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain