SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9798

Length: 2421 nt

UniGene Fasta

>sp_v3.0_unigene9798
CAGAAAAGTTAAGTACTCGGTAACCTGTTATTATGCAAAACAGTTTGATGCCCTTAGGAAAAAGTGCTGTCCAACAGAAATGGACTTCAGATTGTCACTAAGCCGCTGTAAGAAATGGGGGGCTCAAGGAGGAAAGAGCAATGTGTTTTTTGCAAAATCTTTGGATGAAAGATTTATTATTAAGCAAGTCACCAGGACAGAATTGGAGTCTTTTATGAAGTTTGCCTCAGAATATTTCAAATATCTGTCTGACTCCTTAAGTTCTGGAAGCCCCACATGTTTGGCAAAGATCCTTGGTATTTATCAGGTCACTATAAAGAATGCAAAAGGTGGCAAAGAGATCAGGATGGAACTGATGGTAATGGAAAATCTGCTGTTTGGAAGAAAGGTAACAAGGGTTTATGACCTCAAAGGTTCTGGTCGCTCCCGTTACAATGCAGATTCATCAGGCAACAACAAAGTTCTTCTTGACCAGAATCTCTTAGAGACCATGCCAACTGCTCCAATATTTCTTGGGAATAAAGCCAAGCGCCTTTTGGAGAGAGCAGTCTGGAATGATACTTCATTTCTCGCGTCAATTGATGTCATGGATTATTCATTACTTGTTGGAGTTGATGAAGAGCGTTGTGAGCTGGTTTTAGGTATTATTGATTTTATGAGGCAGTATACATGGGACAAGCATCTAGAGACCTGGGTAAAAGCTTCTGGTATTCTTGGTGGTCCGAAAAATATATCACCAACAGTTATATCTCCAAAGCAGTACAAGAAGCGTTTCCGAAAGGCCATGTCTATGTACTTTTTGATGGTTCCAGATCAGTGGTCTCCTCCAGCTATCATCCCTTGTCCGTTGAAGATTGACAAAAACGAAGATTGTTCTTCAATTTTGACAAAAGAAGATAGTGGGGATCAAGCTGCTTAGTACCTTATACCATGCAGACCATTATGCATTTTGCAAAGCCAACACAATGACCTTATCATCATGTACATTTTGAAAAATTCCCTTGAAAAGGCTGATGGGAATCAAAGAAGCTGCTTGTCCCCAGGATTGGTCGAATTGATTATTTCCTTTGTATTAGATATTTGTATTCTTATTTCTCAGATTGCCAATAAGATTTAGGACTGTTGATATTGTAGGCAATCCAAAATTTGTGTAGATCATAATGATATAATTCATGTCTTATAGTTTTGCATGTCACACATCAATTGTTCATATAATGCTCTGTTTTGTGGTAATAATACTTATACAATTGCTTCAAAATATATTCTCATATTTGATTTTCCATTTTAGGTAACATTATCAATAGATACATGCTCTGATCCAAGCAGATGAAAACGCTATTTTTTTCTTGTTTCAAATTTCAATACATGAGGTGTAGTTTACATTGGTGATAAAGCCAACAGTTTTTGCTATGATGTTTTTTATGCAGCGAAGTTGTCTAATGGTGATATCCTAATGATTGCGACGATAATTCAATTGGCAAACTGAGCATTCTTTACTAGAGGTATATGCTCTTGATATTGCGCTTTTATGATGGGAGCAAGCAGCAAGTATTGGCAGTCGAAGATTTCATACTTTGTGACCATCATTTACATGAATAGGGCGGGGGTTCCTTGATTTGAAGGGTTTGGAGGGGCTCATTTTAAGTTCCTCATGTGGATCTAGCTATCAGCGGAAGTGATATGATTTTGTTTGTCCCTGCTGAGAAGTATCAGCACGTTTCTATCCTTTCAATGGTTGGTACATTTGATGCGCTAGAACTATGCATGGTTTTCAGTTAGAGACAATGGCTATCAAGAAACAATGTGAGCTAAACATGCTGCTCCATTAATGGGAACATCTCCTGTCACAGTTCATTAGATTGGTGGCACTATGGATAGTCGGCAATTGACCACTCCCAAAATGGAAGCATTCTGGTACACGTTACTGGGGATTTTAGACATTTCTCATGGCAAGGAGTGCAAGAAGCTGTTAATCTATAAAGTAAATACTATTGTAATATATTAAGCATTGTACGTCTAGTATTTTATTTCAAGGGACAGAAGTAGTCTTGTACATTGACTGTCAGAATCATGCTGTTATGAACAGGGTCAACCGTCGTCTTGCTTGAGACCTGACCCTAAACACAGTTAAGGTTTTAAGATTGGAAAGGTGAAGAATAATTCACTCCGGGCTATTTGTATCTGTGCTTTTAAGTAGCATTACTTCATGAGCTCTTACCCAATTCCTCTTTCTATATCTCCATTTGGACGGCAATTTTAATTGTGTTCTACTGCACATACTGGATTCTATTCATAATAGCACAAGCGGAGTTATTTATAAACGAGCAGTAGTGACGTGCAGTAGAACACAATTAAAATTGCCGTCCAAATGGAGATATAGAAAGAGGAATTGGGTAAGAGCTCATGAAGTAATGCTACTTA

Ace file of the UniGene sp_v3.0_unigene9798

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fyve finger-containing phosphoinositide kinase, fyv1, putative n=1 Tax=Ricinus communis RepID=B9T3Y2_RICCO	-	-	0.0	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Fyve finger-containing phosphoinositide kinase, fyv1, putative	-	-	9.927e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.1.15-	-	2.124e-15	-

Source	Gene names
Sma3	12.t00044; AT4g33240; At1g34260; At1g71010; At1g71010/F15H11.20; At3g14270; At4g33240; CHLREDRAFT_195580; F15H11.20; F23M19.8; F4I10.170; GSVIVT00001768001; GSVIVT00016365001; GSVIVT00030472001; GSVIVT00034002001; LOC_Os03g28140; LOC_Os12g13440; MICPUCDRA

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphatidylinositol phosphate kinase activity	GO:0016307	Molecular Function	-
Sma3	1-phosphatidylinositol-4-phosphate 5-kinase activity	GO:0016308	Molecular Function	-
Sma3	cellular protein metabolic process	GO:0044267	Biological Process	-
Sma3	phosphatidylinositol metabolic process	GO:0046488	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Serine hydroxymethyltransferase	IPR001085	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	Phosphatidylinositol-4-phosphate 5-kinase, core	IPR002498	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33240.1	" FAB1A 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases chr4:16029504-16037278 REVERSE LENGTH=1757"	79%
RefSeq	Arabidopsis thaliana	NP_001190899.1	1-phosphatidylinositol-3-phosphate 5-kinase [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002303331.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABH6

Fln msg: atg_distance in limit (1-15): atg_distance = 14, W2: There is no M at the beginning,

Fln protein: RKVKYSVTCYYAKQFDALRKKCCPTEMDFRLSLSRCKKWGAQGGKSNVFFAKSLDERFIIKQVTRTELESFMKFASEYFKYLSDSLSSGSPTCLAKILGIYQVTIKNAKGGKEIRMELMVMENLLFGRKVTRVYDLKGSGRSRYNADSSGNNKVLLDQNLLETMPTAPIFLGNKAKRLLERAVWNDTSFLASIDVMDYSLLVGVDEERCELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNISPTVISPKQYKKRFRKAMSMYFLMVPDQWSPPAIIPCPLKIDKNEDCSSILTKEDSGDQAA*

Protein Length: 307

Fln nts: CAGAAAAGTTAAGTACTCGGTAACCTGTTATTATGCAAAACAGTTTGATGCCCTTAGGAAAAAGTGCTGTCCAACAGAAATGGACTTCAGATTGTCACTAAGCCGCTGTAAGAAATGGGGGGCTCAAGGAGGAAAGAGCAATGTGTTTTTTGCAAAATCTTTGGATGAAAGATTTATTATTAAGCAAGTCACCAGGACAGAATTGGAGTCTTTTATGAAGTTTGCCTCAGAATATTTCAAATATCTGTCTGACTCCTTAAGTTCTGGAAGCCCCACATGTTTGGCAAAGATCCTTGGTATTTATCAGGTCACTATAAAGAATGCAAAAGGTGGCAAAGAGATCAGGATGGAACTGATGGTAATGGAAAATCTGCTGTTTGGAAGAAAGGTAACAAGGGTTTATGACCTCAAAGGTTCTGGTCGCTCCCGTTACAATGCAGATTCATCAGGCAACAACAAAGTTCTTCTTGACCAGAATCTCTTAGAGACCATGCCAACTGCTCCAATATTTCTTGGGAATAAAGCCAAGCGCCTTTTGGAGAGAGCAGTCTGGAATGATACTTCATTTCTCGCGTCAATTGATGTCATGGATTATTCATTACTTGTTGGAGTTGATGAAGAGCGTTGTGAGCTGGTTTTAGGTATTATTGATTTTATGAGGCAGTATACATGGGACAAGCATCTAGAGACCTGGGTAAAAGCTTCTGGTATTCTTGGTGGTCCGAAAAATATATCACCAACAGTTATATCTCCAAAGCAGTACAAGAAGCGTTTCCGAAAGGCCATGTCTATGTACTTTTTGATGGTTCCAGATCAGTGGTCTCCTCCAGCTATCATCCCTTGTCCGTTGAAGATTGACAAAAACGAAGATTGTTCTTCAATTTTGACAAAAGAAGATAGTGGGGATCAAGCTGCTTAG___TACCTTATACCATGCAGACCATTATGCATTTTGCAAAGCCAACACAATGACCTTATCATCATGTACATTTTGAAAAATTCCCTTGAAAAGGCTGATGGGAATCAAAGAAGCTGCTTGTCCCCAGGATTGGTCGAATTGATTATTTCCTTTGTATTAGATATTTGTATTCTTATTTCTCAGATTGCCAATAAGATTTAGGACTGTTGATATTGTAGGCAATCCAAAATTTGTGTAGATCATAATGATATAATTCATGTCTTATAGTTTTGCATGTCACACATCAATTGTTCATATAATGCTCTGTTTTGTGGTAATAATACTTATACAATTGCTTCAAAATATATTCTCATATTTGATTTTCCATTTTAGGTAACATTATCAATAGATACATGCTCTGATCCAAGCAGATGAAAACGCTATTTTTTTCTTGTTTCAAATTTCAATACATGAGGTGTAGTTTACATTGGTGATAAAGCCAACAGTTTTTGCTATGATGTTTTTTATGCAGCGAAGTTGTCTAATGGTGATATCCTAATGATTGCGACGATAATTCAATTGGCAAACTGAGCATTCTTTACTAGAGGTATATGCTCTTGATATTGCGCTTTTATGATGGGAGCAAGCAGCAAGTATTGGCAGTCGAAGATTTCATACTTTGTGACCATCATTTACATGAATAGGGCGGGGGTTCCTTGATTTGAAGGGTTTGGAGGGGCTCATTTTAAGTTCCTCATGTGGATCTAGCTATCAGCGGAAGTGATATGATTTTGTTTGTCCCTGCTGAGAAGTATCAGCACGTTTCTATCCTTTCAATGGTTGGTACATTTGATGCGCTAGAACTATGCATGGTTTTCAGTTAGAGACAATGGCTATCAAGAAACAATGTGAGCTAAACATGCTGCTCCATTAATGGGAACATCTCCTGTCACAGTTCATTAGATTGGTGGCACTATGGATAGTCGGCAATTGACCACTCCCAAAATGGAAGCATTCTGGTACACGTTACTGGGGATTTTAGACATTTCTCATGGCAAGGAGTGCAAGAAGCTGTTAATCTATAAAGTAAATACTATTGTAATATATTAAGCATTGTACGTCTAGTATTTTATTTCAAGGGACAGAAGTAGTCTTGTACATTGACTGTCAGAATCATGCTGTTATGAACAGGGTCAACCGTCGTCTTGCTTGAGACCTGACCCTAAACACAGTTAAGGTTTTAAGATTGGAAAGGTGAAGAATAATTCACTCCGGGCTATTTGTATCTGTGCTTTTAAGTAGCATTACTTCATGAGCTCTTACCCAATTCCTCTTTCTATATCTCCATTTGGACGGCAATTTTAATTGTGTTCTACTGCACATACTGGATTCTATTCATAATAGCACAAGCGGAGTTATTTATAAACGAGCAGTAGTGACGTGCAGTAGAACACAATTAAAATTGCCGTCCAAATGGAGATATAGAAAGAGGAATTGGGTAAGAGCTCATGAAGTAATGCTACTTA

Fln Alignment:

Contig9798___RKVKYSVTCYYAKQFDALRKKCCPTEMDFRLSLSRCKKWGAQGGKSNVFFAKSLDERFIIKQVTRTELESFMKFASEYFKYLSDSLSSGSPTCLAKILGIYQVTIKNAKGGKEIRMELMVMENLLFGRKVTRVYDLKGSGRSRYNADSSGNNKVLLDQNLLETMPTAPIFLGNKAKRLLERAVWNDTSFLASIDVMDYSLLVGVDEERCELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNISPTVISPKQYKKRFRKAMSMYFLMVPDQWSPPAIIPCPLKIDKNEDCSSILTKEDSGDQAA
D5ABH6______________RKVKYSVTCYYAKQFDALRKKCCPTEMDFRLSLSRCKKWGAQGGKSNVFFAKSLDERFIIKQVTRTELESFIKFASEYFKYLSDSLSSGSPTCLAKILGIYQVTIKNTKSGKEIRMDLMVMENLLFGRNVTRVYDLKGSGRSRYNADSSGNNKVLLDQNLLETMPTSPIFLGNKAKRLLERAVWNDTSFLASIDVMDYSLLVGVDEERCELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNISPTVISPKQYKKRFRKAMSTYFLMVPDQWSPPAIIPSPLQIDKNEDGSSILTKEDSGDQVA

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
181	20			80	0.995493
230	14		85		0.993533
231	85			14	0.993533
232	85		14		0.993533
250		28		71	1.0
443		10		90	0.90298
493	12		87		0.992554
495	12	87			0.992554
496	87			12	0.992554
497	87			12	0.992554
1468	50	50			1.0
1469	50		50		1.0
1471			50	50	1.0
1472	50	50			1.0
1473	50	50			1.0
1474	50	50			1.0
1480	50			50	1.0
1481	50		50		1.0
1482	50			50	1.0
1484	50			50	1.0
1485		50	50		1.0
1486	50			50	1.0
1487		50	50		1.0
1488	50	50			1.0
1771			28	71	1.0
1772	14			85	0.993533
1773	14	85			0.993533
1776	14			85	0.993533
1781	14		85		0.993533
1947	80		20		0.995493
1950	20		80		0.995493
1952	80	20			0.995493
1953	80			20	0.995493
1954			80	20	0.995493
1956	80		20		0.995493
1957		20	80		0.995493
1962	80	20			0.995493
1963			80	20	0.995493
1964	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain