SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9793

Length: 1896 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9793

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	minor histocompatibility antigen H13 [Arabidopsis thaliana] gb\|AAC34490.1\| expressed protein [Arabidopsis thaliana] gb\|AAL38345.1\| unknown protein [Arabidopsis thaliana] gb\|AAM47890.1\| unknown protein [Arabidopsis thaliana] gb\|AEC05665.1\| minor histocompa	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase A22, presenilin signal peptide	IPR006639	-	0.0	-
Sma3	Peptidase A22B, signal peptide peptidase	IPR007369	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G03120.1	ATSPP, SPP signal peptide peptidase chr2:937554-940083 FORWARD LENGTH=344	84%
RefSeq	Arabidopsis thaliana	NP_565294.1	minor histocompatibility antigen H13 [Arabidopsis thaliana]	84%
RefSeq	Populus trichocarpa	XP_002313995.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ43

Fln msg: your sequence is longer than subject: 353 - 298

Fln protein: MRMNEKLASAALAVLSVAPLVVNVNPNLNVVLTACLTVYVGCYRSVKPAPPSETMSKEHAMRFPLIGSVVLVSLFLLFKFLSKDLVNAILTSYFFVLGIIALSATLLPAIERFLPKKWNESPINFHLPYFKSVEVEFTKSQLVAAIPGTFFCTWYALKKHWLANNVLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPYSMLGLGDIVIPGIFVALALRFDVSREKGERYFKSAFIGYAVGVIVTIIVMNWFQAAQPALLYIVPGVIGFLAVHCIWNGEVKPLLEFDESKTSAQSSSADTSQSDGDAVVADGKPDHKSD*

Protein Length: 354

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGGTTGAATCTTTGCTGTTTAGTGTCGAGATCGTCGCGTTCGAAAGCCTCTTCTGCACACATTATCTTGTTTTGCATTTTTCATATCAAATCCAATTGAGGTGAATTTTGAATTGCCGAGGCCTGGTATCCCGGGTATTCGATCAGCC_-_ATGAGGATGAATGAGAAGCTCGCAAGTGCAGCTCTGGCAGTTTTATCAGTGGCACCACTTGTTGTAAATGTGAATCCAAACCTGAATGTAGTCTTGACAGCATGCCTTACTGTGTATGTTGGTTGCTATCGTTCTGTCAAGCCTGCACCACCTTCAGAGACCATGTCAAAGGAGCATGCAATGCGCTTTCCTCTGATTGGAAGTGTTGTGCTTGTTTCACTATTCTTGCTGTTCAAGTTCTTATCAAAAGACTTGGTCAATGCCATTCTCACAAGTTACTTTTTCGTTCTTGGGATAATTGCATTATCAGCCACATTGTTACCTGCTATTGAGCGTTTTCTGCCAAAGAAGTGGAATGAGTCACCAATAAACTTCCATCTTCCATATTTTAAATCTGTGGAAGTAGAGTTCACCAAATCACAGCTTGTGGCTGCTATTCCTGGAACATTTTTTTGCACGTGGTATGCATTGAAGAAACACTGGTTAGCAAACAACGTTTTGGGATTGGCATTTTGTATACAGGGTATTGAGATGTTATCTCTTGGATCCTTCAAAACTGGGGCTATCCTCTTGGCAGGACTCTTTGTATATGATATTTTTTGGGTATTCTTCACTCCAGTGATGGTTAGTGTAGCCAAGTCCTTTGATGCTCCCATTAAGCTGCTATTTCCCACAGCAGATGCAGCCCGGCCTTATTCTATGCTTGGGCTTGGTGATATTGTTATTCCAGGAATTTTTGTGGCTTTAGCTTTACGATTTGACGTCTCAAGAGAAAAAGGAGAACGATACTTTAAGAGTGCATTCATTGGCTACGCAGTAGGAGTGATTGTCACAATTATTGTGATGAATTGGTTTCAGGCAGCTCAACCTGCCCTTCTGTATATTGTTCCTGGTGTAATTGGATTTTTAGCTGTGCATTGCATTTGGAATGGGGAAGTCAAGCCATTGTTGGAATTTGATGAATCTAAGACTTCTGCTCAATCAAGTTCAGCCGACACATCTCAATCAGATGGAGATGCAGTAGTTGCAGATGGAAAGCCAGATCACAAATCAGATTAG___GAAAATAAGGAAGTCCATAATTTTCATCGTGGGTGCTATTACAAGTGCTCAAAACTGGGGCCTTTTCTTCGGCATCATTATCATATAATTCATAAATCAGCAGCAAATCAAATACGTGCTTGCTGGTATTTTCCATTTCAAAAAAGTGATCTAGAAACTGGACTCGTATTTTCTTCACTTTTACATGCTTTAAAAATTTCCTCTGGGCAGTTCAGCGTGAGGGCATGTCTTCCATTTTGTACGGCATATTTCATGGATTTCTTATATTTGAGATTAGCTCTGATCTAAGAAGATGGGTGGTAATTTATCTTGTGATTACTAAGTTCATAATGCCCTCTGATAAAATATCTAACATTAAAATTATTGACAGCAAAGATAAATTCTTTCAGGTGTCTTATTTAGTGCAATTGTACATGTTAGTGGTTTATACATGTTGCCACAACATTTTGGGCCAGAGGCGGGATGCTTAAATTTTTTTGGCATCCCAATTGTATTGTTGGAAGCAATTGCATTCTTAGATGTTAACTTAAAAATTTTGAAAAATAGACGGTATTTTGAGGAGTAGTTGTTTCTCTCATTTTGTACTGATTTGCCCACCCTTATGCTATTCTTTTGGAGCCTTACACTTTATGCTCTGCTAGAGGTTCAATGCTACATCTATTGATG

Fln Alignment:

Contig9793___MSKEHAMRFPLIGXXXXXXXXXXXXXXXXDLVNAILTSYFFVLGIIALSATLLPAIERFLPKKWNESPINFHLPYFKSVEVEFTKSQLVAAIPGTFFCTWYALKKHWLANNVLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPYSMLGLGDIVIPGIFVALALRFDVSREKGERYFKSAFIGYAVGVIVTIIVMNWFQAAQPALLYIVPGVIGFLAVHCIWNGEVKPLLEFDESKXXXXXXXXXXXXXXGDAVVADGKPDHKSD
A9NZ43______________MSKEHAMRFPLIGSVVLVSLFLLFKFLSKDLVNAILTSYFFVLGIIALSATLLPAIERFLPKQWNELPINCHLPYFKSVEVEFTKSQLVAAIPGTFFCTWYALKKHWLANNVLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPYSMLGLGDIVIPGIFVALALRFDVSRKKGERYFRSAFIGYSVGVIVTIIVMNWFQAAQPALLYIVPGVIGFLAVHCIWNGEVKPLLEFDESKTSAQSSSSDTSQSDGDTVVADGKPDHKSD

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
263	12		87		0.992554
688		80		20	0.995493
732	20		80		0.995493
733	20		80		0.995493
734			80	20	0.995493
735		80	20		0.995493
771			33	66	0.997452
1301		90	10		0.90298
1306			10	90	0.90298
1321	10			90	0.90298
1325	90			10	0.90298
1794	14			85	0.993533
1795	80	20			0.995493
1802		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain