SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9792

Length: 2331 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene9792
TCACGTGTATGGTACATAGGACCGCGTGCTTCTTCGCTTTAAACTCTCAACCACTACCCATCGTGTGTGAGAGAGGGGAGGTAATGAGCATGAGCCTCCAATCCCATGTGCATAAGCTTGAAGCCCACTCCAAACGATAGTGCACAATCATTTGCTCAACAGCTATTTAAATCCGGATTGTCTCAGATATTGCGGTGTGGGTATTTTCATTTTCAATTTGAAAAAGGTCTGCTCCTCTTCCTTCATCTCAATCACATGAGAGGTTTTAATCGGACAGACAGGTGGGCAGGTCATCCAGAGGAGGAGGAACAACAACATCAAGGGCCAAACTCAAGAACAGGCACATCGGAGGAGGTTTGAAAACAACCCGTGGAGGAAAGGACAATATACAATACATAAGTGCTTGGTTGTAAGGTCTTAGACAATCAATATTTTGTGGGGTGAGAGACCTGAAGAGTATCTGATTATTATATAAGATTGCAACCTCCATTTTGGCTTCTTCTTCGGCGGCCCATAACTGGAGTGAATAGCACAAAGATTTATTCTGTTCTTCTGTCAATATTTCAAGATGCCAAAGGATCTGAAGTCATGTGATAATCAGATTTCACGGAGGGCTAGGAGGTCTTGTCATCATCCTTATAATAATTCAGAGAAAACAATCTTAGATGGTAGTTCAGAAGATGTGGACTTAGATGCTCAGAAGAAAGAGTGGGATACTGCTGTGTGCCTCATTTGTTTGGAACACCCACACAATGCTGTTCTGCTGTTGTGTAGTTCTTATGACAAAGGATGCCGGCCATATATGTGTGACACAAGTTCTCGACATTCAAATTGCCTCGATCAATACAGGAAACCAAGGGCAAACTGCAGAAACATGTCATCCGAAGGCATTGAAGTCTTTGTGGATCATCGACAGGTTGAAGTGTCAGGTTCAAGAGCACGTGCCAGCTTCGATGTTGCAAATTTAGATGGGCCAAGAAGAATGGGAAGAAGTCTTTCTGGATCATGGATATCAAGATCAGGAGAATCAGCTATATCACATAATAGGAGGGCTTTGCATGGCTTGTCAGATTTGCAAGCAGACAGGAATAGAGATGTGGTGAGAGATATTGCTGTTACAGAAGGGGAAACATCAAGTATCAACCTGAGGCACGATAGAAGTGGAACTACTGAGATACTTGTGAATGATTCAGTGGAGTTGAAATGCCCACTTTGTCGGGGAGAAGTGAGAGGATGGCAGATTACTGAGGCTGCTAGGAAATATCTTAATTCAAAGCCAAGAAGTTGTTCTTACGAGTCATGCTCTTTTAGTGGTGCCTACAGAGATCTTCGTAAACACGCAAGAAGTGTTCATCCTACAGTGAGGCCAGCAGATGTAGATCCAGCTCGCCAGCGTGCTTGGCGAGACTCAGAACTATCTCGTGAGTTTGAGGACATGTTGAGTACTATTCGTTCAGCTATGCCCAATGCAATTGTGCTTGGGGATTATGTTATTGATAATGAAGATGGAATTCATGTTGACCAGGATGAGGACAGTGACACCTTGTCAACTACCTCTGGAAGCTGGTGGACTAGATTCTTTTTGTTTCATATGTTTGGTCCCATTGCCGCTCTGACTGATGGTAGACGATTCTCAGCAAGATGGAGAGCTCCTAGAAGGCAACGTAATACCGCTGAAATACTCTCTGGGCAATCTGTTTTATGGGGAGAAAACGGAGTAGATAATGACGACGAAGAGCTGGATAACGCTTCAGTATTTAACAGTTCTCCTGGATCTAGGAGGAGAAGACGTTCAAATGGTTTCAGACTAGATGATGATATGCTGTGAAATTTTAGTCGATGTTTTTCAAGGCATCAATTTTTAACTTTTACTGGCGTGCACTGATGTATCTGTGGGTCGTGAATATCAGTCAGTAGCTCAAACATAAGAGATATCCTCTCTTATTAATCTGTTTGAAGATGCCACTTCATAGTGCCATTATATATTACGACCATATTTTGTTTCAAGTCAATATTAAAATATCCTGAACAAATCTCATCATAATCGGAAGGTTCGAACAGCTCTGGGATCAGATTTTGGAAGCCAGCTATGTAATTAGATATTTTTCTGATCCATGGTAGATTTAAAGTTTTTAGTGCTTTGCATGATTACTTATATTTTTATATTTATTCATGAAAGCTTCCATCTTGCTGTTGGTTTTTTTAATAGAAATCTCAGGTATATGGATATAGAGTGGATTTTATAAATCTCTGTACTAAACGAATCGAAATTGAAAGAGTTGCAATCTATTACATGCAGTCAAATAACGAAGTTGTTAAATTGTTAATTGC

Ace file of the UniGene sp_v3.0_unigene9792 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1644 domain containing protein	-	-	3.0e-38	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%

Source	Gene names
Sma3	AT4G08460; At4g08460; GSVIVT00001263001; GSVIVT00015319001; OSIGBa0131J24.4; OSJNBa0027H09.16; Os02g0566500; OsI_07715; OsJ_07187; P0020C11.43; P0020D05.10; PHYPADRAFT_125213; PHYPADRAFT_211705; POPTRDRAFT_1073308; POPTRDRAFT_410491; RCOM_1032830; RCOM_17

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Protein of unknown function DUF1644	IPR012866	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9B7

Fln msg: your sequence is longer than subject: 420 - 328

Fln protein: MPKDLKSCDNQISRRARRSCHHPYNNSEKTILDGSSEDVDLDAQKKEWDTAVCLICLEHPHNAVLLLCSSYDKGCRPYMCDTSSRHSNCLDQYRKPRANCRNMSSEGIEVFVDHRQVEVSGSRARASFDVANLDGPRRMGRSLSGSWISRSGESAISHNRRALHGLSDLQADRNRDVVRDIAVTEGETSSINLRHDRSGTTEILVNDSVELKCPLCRGEVRGWQITEAARKYLNSKPRSCSYESCSFSGAYRDLRKHARSVHPTVRPADVDPARQRAWRDSELSREFEDMLSTIRSAMPNAIVLGDYVIDNEDGIHVDQDEDSDTLSTTSGSWWTRFFLFHMFGPIAALTDGRRFSARWRAPRRQRNTAEILSGQSVLWGENGVDNDDEELDNASVFNSSPGSRRRRRSNGFRLDDDML*

Protein Length: 421

Fln nts: TCACGTGTATGGTACATAGGACCGCGTGCTTCTTCGCTTTAAACTCTCAACCACTACCCATCGTGTGTGAGAGAGGGGAGGTAATGAGCATGAGCCTCCAATCCCATGTGCATAAGCTTGAAGCCCACTCCAAACGATAGTGCACAATCATTTGCTCAACAGCTATTTAAATCCGGATTGTCTCAGATATTGCGGTGTGGGTATTTTCATTTTCAATTTGAAAAAGGTCTGCTCCTCTTCCTTCATCTCAATCACATGAGAGGTTTTAATCGGACAGACAGGTGGGCAGGTCATCCAGAGGAGGAGGAACAACAACATCAAGGGCCAAACTCAAGAACAGGCACATCGGAGGAGGTTTGAAAACAACCCGTGGAGGAAAGGACAATATACAATACATAAGTGCTTGGTTGTAAGGTCTTAGACAATCAATATTTTGTGGGGTGAGAGACCTGAAGAGTATCTGATTATTATATAAGATTGCAACCTCCATTTTGGCTTCTTCTTCGGCGGCCCATAACTGGAGTGAATAGCACAAAGATTTATTCTGTTCTTCTGTCAATATTTCAAG_-_ATGCCAAAGGATCTGAAGTCATGTGATAATCAGATTTCACGGAGGGCTAGGAGGTCTTGTCATCATCCTTATAATAATTCAGAGAAAACAATCTTAGATGGTAGTTCAGAAGATGTGGACTTAGATGCTCAGAAGAAAGAGTGGGATACTGCTGTGTGCCTCATTTGTTTGGAACACCCACACAATGCTGTTCTGCTGTTGTGTAGTTCTTATGACAAAGGATGCCGGCCATATATGTGTGACACAAGTTCTCGACATTCAAATTGCCTCGATCAATACAGGAAACCAAGGGCAAACTGCAGAAACATGTCATCCGAAGGCATTGAAGTCTTTGTGGATCATCGACAGGTTGAAGTGTCAGGTTCAAGAGCACGTGCCAGCTTCGATGTTGCAAATTTAGATGGGCCAAGAAGAATGGGAAGAAGTCTTTCTGGATCATGGATATCAAGATCAGGAGAATCAGCTATATCACATAATAGGAGGGCTTTGCATGGCTTGTCAGATTTGCAAGCAGACAGGAATAGAGATGTGGTGAGAGATATTGCTGTTACAGAAGGGGAAACATCAAGTATCAACCTGAGGCACGATAGAAGTGGAACTACTGAGATACTTGTGAATGATTCAGTGGAGTTGAAATGCCCACTTTGTCGGGGAGAAGTGAGAGGATGGCAGATTACTGAGGCTGCTAGGAAATATCTTAATTCAAAGCCAAGAAGTTGTTCTTACGAGTCATGCTCTTTTAGTGGTGCCTACAGAGATCTTCGTAAACACGCAAGAAGTGTTCATCCTACAGTGAGGCCAGCAGATGTAGATCCAGCTCGCCAGCGTGCTTGGCGAGACTCAGAACTATCTCGTGAGTTTGAGGACATGTTGAGTACTATTCGTTCAGCTATGCCCAATGCAATTGTGCTTGGGGATTATGTTATTGATAATGAAGATGGAATTCATGTTGACCAGGATGAGGACAGTGACACCTTGTCAACTACCTCTGGAAGCTGGTGGACTAGATTCTTTTTGTTTCATATGTTTGGTCCCATTGCCGCTCTGACTGATGGTAGACGATTCTCAGCAAGATGGAGAGCTCCTAGAAGGCAACGTAATACCGCTGAAATACTCTCTGGGCAATCTGTTTTATGGGGAGAAAACGGAGTAGATAATGACGACGAAGAGCTGGATAACGCTTCAGTATTTAACAGTTCTCCTGGATCTAGGAGGAGAAGACGTTCAAATGGTTTCAGACTAGATGATGATATGCTGTGA___AATTTTAGTCGATGTTTTTCAAGGCATCAATTTTTAACTTTTACTGGCGTGCACTGATGTATCTGTGGGTCGTGAATATCAGTCAGTAGCTCAAACATAAGAGATATCCTCTCTTATTAATCTGTTTGAAGATGCCACTTCATAGTGCCATTATATATTACGACCATATTTTGTTTCAAGTCAATATTAAAATATCCTGAACAAATCTCATCATAATCGGAAGGTTCGAACAGCTCTGGGATCAGATTTTGGAAGCCAGCTATGTAATTAGATATTTTTCTGATCCATGGTAGATTTAAAGTTTTTAGTGCTTTGCATGATTACTTATATTTTTATATTTATTCATGAAAGCTTCCATCTTGCTGTTGGTTTTTTTAATAGAAATCTCAGGTATATGGATATAGAGTGGATTTTATAAATCTCTGTACTAAACGAATCGAAATTGAAAGAGTTGCAATCTATTACATGCAGTCAAATAACGAAGTTGTTAAATTGTTAATTGC

Fln Alignment:

Contig9792___LEHPHNAVLLLCSSYDKGCRPYMCDTSSRHSNCLDQYRKP-RANCRNMSSEGIEVFVDHRQVEVSGSRARASFDVANLDGPRRMGRSLSGSWISRSGESAISHNRRALHGLSDLQADRNRDVVRDIAVTEGETSSINLRHDRSGT------TEILVNDSVELK---CPLCRGEVRGWQITEAARKYLNSKPRSCSYESCSFSGAYRDLRKHARSVHPTVRPADVDPARQRAWRDSELSREFEDMLSTIRSAMPNAIVLGDYVIDNEDGIHVDQDEDSDTLSTTSGSWWTRFFLFHMFGPIAALTDG
D5A9B7______________MHSPHNAVLLLCSSHEKGCHAYMCDTSYRHSNCLDQFRKAYSASTTSTSSNGS----DH-SVEIS----------------------------AHSSSEPIASSRLVVDRLE------SHDVVLEVGTSQHSTSVISDGQNELSTEGPGPDTELLLHGSCELPGLVCPLCRGKVKGWTVVHSVRKYLNAKARSCAQESCSFVGTYAELRKHARCVHPHARPSELDPDQQRKWRRLEQQQDIGDVLSNIRSEIPGAMVFGDYVI---EGDSIENEDDGVDFPGEENNWLTVFLLFQVFEPTATLRSG

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
651		25		75	0.996473
652	75	25			0.996473
653		25		75	0.996473
654	25			75	0.996473
1035		93		6	0.999364
1059		6		93	0.999453
1848	11		88		0.923564
1849	11			88	0.923564
1852		88		11	0.923564
1853	66		33		1.0
1904	14			85	0.993533
1905		28	71		1.0
1951	16	83			0.994512
1952	16	83			0.994512
1954			20	80	0.995493
2139		25	75		0.996473
2141	75	25			0.996473
2262		33		66	0.997452
2265		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain