SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9781

Length: 1500 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9781

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase III subunit epsilon n=3 Tax=Zea mays RepID=B6TZF8_MAIZE	-	-	0.0	41%
FL-Next	tr=DNA polymerase III subunit epsilon; Zea mays (Maize).	-	-	0.0	41%

Source	Gene names
Sma3	At5g26940; H0215F08.4; LOC_Os03g18940; MICPUCDRAFT_70648; OSJNBa0053K19.7; Os03g0301400; Os04g0623400; OsI_11194; OsI_17478; OsJ_10524; OsJ_16216; PHYPADRAFT_64757; POPTRDRAFT_671736; RCOM_1434480; REX; VITISV_042394;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	mismatched DNA binding	GO:0030983	Molecular Function	-
Sma3	mismatch repair	GO:0006298	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA mismatch repair protein MutS, C-terminal	IPR000432	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	DNA mismatch repair protein MutS, type 1	IPR005748	-	-
Sma3	Exonuclease	IPR006055	-	-
Sma3	DNA mismatch repair protein MutS-like, N-terminal	IPR007695	-	-
Sma3	DNA mismatch repair protein MutS, core	IPR007696	-	-
Sma3	DNA mismatch repair protein MutS, connector	IPR007860	-	-
Sma3	DNA mismatch repair protein MutS, clamp	IPR007861	-	-
Sma3	Exonuclease, RNase T/DNA polymerase III	IPR013520	-	-
Sma3	DNA mismatch repair protein MutS, N-terminal	IPR016151	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G26940.1	Polynucleotidyl transferase, ribonuclease H-like superfamily protein chr5:9481429-9482647 FORWARD LENGTH=316	0.0	45%
RefSeq	Arabidopsis thaliana	NP_851083.1	exonuclease family protein [Arabidopsis thaliana]	0.0	45%
RefSeq	Populus trichocarpa	XP_002330239.1	predicted protein [Populus trichocarpa]	9.94922e-44	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B6TZF8

Fln msg: your sequence is longer than subject: 360 - 315

Fln protein: MFGRHSFPCSSSLSSRSACQVFRYGGLFSMCRVHEIWRSIQYKSQLCCLLDFTNLSMQNIGYSMRYCPFIKSLPLLSFQPVQLHKIASAFKSNIFGFPPSKQDGIDEENSPAGRIIANEHYMHTMSEKTALKKCNTRRSKIKQAADTPLKHSEGNYLNQKPIVIVFDLETTGFKWDHDRIIEFAAQDLVGGPDSTIECLVNPECFVTNERIHGISNRMVNRSDVPRWKDLAPTLIHFIKFRQKAGGPVILVAHNCRRFDARFLVKEFSRCSVEIPSDWVFVDTLPLAREVLKLNGSKLVDTKLNSLREHYGIPLMGTAHRAMSDVNTLALVLQKLSFELKLPVSGLLEKSFKASDIIQD*

Protein Length: 361

Fln nts: CGTCGTGACATGGGCAAACACTGAATTTTTACCTCGTATTCTCGGGTGACATGTCTACATTTTACAGTTTGGGTGGGGAGCCAACATATTGACCTTGAGAGTAGGAGAGCGGGACGGAAGGCGGGGTTCTCGGCCCCGTTTCAGCAGGCCGATGCATTAATCAGGCATTGTAAACCTCATCATCCAGT_-_ATGTTCGGTCGCCATAGCTTCCCCTGCTCCTCATCATTATCATCTAGAAGTGCATGTCAAGTGTTCAGATATGGAGGGCTCTTTTCAATGTGCAGAGTCCATGAGATTTGGAGGAGTATTCAGTACAAAAGTCAGTTGTGCTGCCTTTTGGATTTCACAAACCTCTCTATGCAAAATATTGGTTACTCCATGAGATACTGTCCTTTCATTAAAAGCTTACCCCTCCTGAGTTTTCAACCAGTTCAGCTTCACAAGATAGCAAGCGCTTTTAAGAGCAACATCTTTGGGTTCCCACCATCCAAGCAGGATGGCATCGACGAAGAGAATTCTCCAGCAGGTAGAATTATTGCTAATGAACATTATATGCATACCATGTCAGAGAAAACGGCCCTAAAAAAATGCAACACTCGTAGGTCAAAAATAAAGCAAGCTGCAGATACTCCATTGAAGCATTCTGAAGGAAATTATTTGAATCAGAAGCCAATAGTTATTGTGTTTGATCTTGAAACTACTGGTTTTAAGTGGGACCATGACAGAATTATTGAATTCGCTGCTCAAGATCTTGTTGGTGGACCAGACAGTACAATTGAATGTTTGGTAAATCCTGAATGCTTTGTGACAAATGAACGGATTCATGGTATCAGCAATCGAATGGTCAATAGATCTGATGTTCCAAGGTGGAAAGACCTTGCTCCTACTTTAATCCATTTTATAAAGTTTCGACAGAAAGCTGGTGGTCCTGTTATTTTGGTGGCTCACAACTGTCGTCGCTTTGATGCACGTTTTCTTGTGAAGGAGTTTAGCCGCTGTTCAGTCGAAATTCCTTCTGATTGGGTTTTTGTAGATACACTTCCTCTTGCTCGTGAAGTATTGAAGTTGAATGGGTCAAAGCTTGTCGATACAAAATTAAATTCCCTTCGTGAGCATTATGGAATTCCATTAATGGGAACAGCACACAGAGCAATGTCAGATGTCAACACGCTTGCATTAGTGCTGCAAAAATTGTCGTTTGAACTGAAGCTACCTGTTTCAGGTCTTCTAGAAAAGTCTTTCAAGGCTTCTGATATAATTCAAGATTGA___ACTCTCGTAACAATAGAATATTATTTGAAATCCACTTAATTATTTGATTCATGAATGCATGAAAGCATGAAGTTATTTTAATATTTATCTACACAGGAGACCAAAATGACAACCTCACATGGTTTGCCTTCCTTTATCCCTCTTCATGGGAGATAAAAATTGCATTACCATATGGACGCACTTGCTATGGTTTAACAGGATCATAAACGCACCAAATTTCTAGTTGTCGTGT

Fln Alignment:

Contig9781___SQLCCLLDFTNLSMQNIG--YSMRYCPFIKSLPLLSFQPVQLHKIASAFKSNIFGFPPSKQDGIDEENSPAGRIIANEHYMHTMSEKTALKKCNTRRSKIKQAADTPLKHSEGNYLNQKP----IVIVFDLETTGFKWDHDRIIEFAAQDLVGGPDSTIECLVNPECFVTNERIHGISNRMVNRSDVPRWKDLAPTLIHFIKFRQKAGGPVILVAHNCRRFDARFLVKEFSRCSVEIPSDWVFVDTLPLAREVLKLNGSKLVDTKLNSLREHYGIPLMGTAHRAMSDVNTLALVLQKLSFELKLPVSGLLEKSFKASDI
B6TZF8______________SSICCAK--FHLLRNSIGDTCSVRWLKYHSRLIYETFLSIRIHQSR----------PPSTTVLARSTRKGSKQSFSNGRHLHSKSVESSIEVF--KQSELEQLKSLHCYNVEEEFSEVKTEWPATILVFDIETTGFSRRDDRIIEFAVRDLMGGKNSTFQTLINPEKDVKNTYVHGINNSMLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTGSAHRAMQDVTTLSYVLQKLTFELKLTVPQLLEKSFRASDL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1388	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain