SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9758

Length: 2017 nt

UniGene Fasta

>sp_v3.0_unigene9758
TGCTAGCTGTTCAGGCGGATAGCATTTCTGGATTTCATGCAAACACACATATCCCTCTGGTTATTGGATCACAAATGCGGTACGAAGTCACTGGTGATCCACTTTACAAGGAAATTGGTACCTTCTTCATGGACATCGTTAATTCATCACATGCTTATGCAACTGGAGGAACGTCTGTCAGTGAATTCTGGTCTGACCCAAAGCGGCTCGCTACCACACTTGGCCGAGAGAATGAAGAGTCTTGTACTACTTATAACATGCTAAAGGTTGCTCGACACTTGTTTCGGTGGACCAAAGCAATGGCCTATGCAGATTATTATGAGCGTGCTTTAACAAATGGTGTGCTCAGCATCCAAAGAGGTAGTGAGCCTGGGATCATGATTTATATGCTTCCCCAAGCACCAGGAAGTTCTAAGGCTGTTACCTATCATGGTTGGGGTACAAAATATGATTCATTCTGGTGCTGTTATGGTACAGCCACGGAGTCATTCTCAAAATTGGGGGACTCTATATACTTCCAAGAAGAAGGCGCTAGTCCTAGTTTGTATATCATTCAATTTATATCTAGCATGCTTACTTGGGATGCAGCAGGACTTACTTTAAAGCAAGTGGTTCAACCATTGTCATCGTGGGACCCAAACCTCCATGTGTCATTGGAGTTCTCAACATTCAAGGCTGCAAAGACAGAGAATGAATTATCTAGTGTGAATATACGGATACCGTTTTGGACAGATACAGACAGTGCACAAGCAATGCTGAATGGAGAAAATCTATCATTACCAGACCCAGGAAGCTTTTTGACAGTTACAAAGAAATGGATATCAGGGGACAAGTTGTCTTTATCATTTCCAGTTAGCCTTAGGACAGAAAGCATTCAAGATGATCGCCCTCAGTTTCAATCAGTTCAGGCAATCTTGTTTGGCCCTTACCTGCTAGCTGGCATGACCGATGGAGAATGGGACCTAAACATAGGAAACACAAATTCATTTTCTGATTGGATCACATCTGTTCCTCCTGACTTTGCTTCGCAGTTACACACTTTTAGTCAAGAATGGAAGATATCTGGTTCAAATGAATCCAAGAACAACACCCTTGTAATTACATACAACAATGTTTCAAAATCAATAATAATGGATTCTTTTCCAGAGGAAGGGACAAATGAGGCAGCGCATGCTACTTTCAGAATTGTAGATACTAATGTAAAGACTAGTCACAAAAGGATAAGAAATTCAGATTCAGCCATGGATTTTGTGGGAAAGACAGTTTATCTGGAGCTCTTTGGTCATCCTGGAATGGTTATTACCCATCAGGGAATCCATAATAATTTGACTGTTTCACAGCAAGATGAGGTTAGCCTGGCAGATAAAGATCAGTGTTCTGTGAGACCTTGCATGACACTGTCGGTGGACAGGGCGACCATCTTCAAAGTACACACAGGATTGGATGGGAATAATAATTCTCTCTCTTTTGAGTCTGTAAATTTTCGTGGTTGCTTTCTATATGGAGGGACACGTTATGGACAAGCTGTTCAACTGCAGTGCAAGCCTACAAAAAGGGATTTGGATTTCAACCATGCAGTTAGCTACAATGCAAACACAGGACTCAGTGCATATCATCCAATCAGTTTCATTGCTACTGGTGCAAAGAGAAGCTACCTTCTTGCACCTCTTTTGGCCTTCAGGGATGAATCTTATACAGTGTATTTCCACATCACTAGTTGAACCCATTTTCCTAAACATGTCTCCAAATAGATTAGGGTAGACTAAAGCCACTTTGCATGAGTTTAGCTTCATTAAAATCTGTTCAGCACTCTGTTAAGAATAGTTTGCAGTACATTCCCATTAACTGTATTTATTCACTGACTCTTAAGCTATGTATTTTTAATTAAATAGTCCAAGATATGTTCTCTTAATTACCTTAAGGTACCTGCCTGTGCCAAATAGCTCGTTGCTACCAATGTAAAATCAGTTTTAAGTTTTAATAGCAATTGATCATTTAGAAATAATGATTATGACAT

Ace file of the UniGene sp_v3.0_unigene9758

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1680 domain containing protein	-	-	0.0	32%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	57%

Source	Gene names
Sma3	At5g12950; At5g12950/T24H18_120; At5g12960; GSVIVT00024646001; GSVIVT00024659001; OJ1225_F07.14; Os02g0195500; Os06g0612900; Os06g0613000; OsI_06226; OsI_23690; OsI_23691; OsI_23693; OsI_23694; OsJ_05746; OsJ_21963; P0417G12.12; P0417G12.14; P0429G06.29;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Protein of unknown function DUF1680	IPR012878	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR017909	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G12960.1	Putative glycosyl hydrolase of unknown function (DUF1680) chr5:4097788-4101518 FORWARD LENGTH=865	50%
RefSeq	Arabidopsis thaliana	NP_196800.2	uncharacterized protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002297785.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9GM82

Fln msg: your sequence is shorter than subject: 573 - 858

Fln protein: LAVQADSISGFHANTHIPLVIGSQMRYEVTGDPLYKEIGTFFMDIVNSSHAYATGGTSVSEFWSDPKRLATTLGRENEESCTTYNMLKVARHLFRWTKAMAYADYYERALTNGVLSIQRGSEPGIMIYMLPQAPGSSKAVTYHGWGTKYDSFWCCYGTATESFSKLGDSIYFQEEGASPSLYIIQFISSMLTWDAAGLTLKQVVQPLSSWDPNLHVSLEFSTFKAAKTENELSSVNIRIPFWTDTDSAQAMLNGENLSLPDPGSFLTVTKKWISGDKLSLSFPVSLRTESIQDDRPQFQSVQAILFGPYLLAGMTDGEWDLNIGNTNSFSDWITSVPPDFASQLHTFSQEWKISGSNESKNNTLVITYNNVSKSIIMDSFPEEGTNEAAHATFRIVDTNVKTSHKRIRNSDSAMDFVGKTVYLELFGHPGMVITHQGIHNNLTVSQQDEVSLADKDQCSVRPCMTLSVDRATIFKVHTGLDGNNNSLSFESVNFRGCFLYGGTRYGQAVQLQCKPTKRDLDFNHAVSYNANTGLSAYHPISFIATGAKRSYLLAPLLAFRDESYTVYFHITS*

Protein Length: 574

Fln nts: TGCTAGCTGTTCAGGCGGATAGCATTTCTGGATTTCATGCAAACACACATATCCCTCTGGTTATTGGATCACAAATGCGGTACGAAGTCACTGGTGATCCACTTTACAAGGAAATTGGTACCTTCTTCATGGACATCGTTAATTCATCACATGCTTATGCAACTGGAGGAACGTCTGTCAGTGAATTCTGGTCTGACCCAAAGCGGCTCGCTACCACACTTGGCCGAGAGAATGAAGAGTCTTGTACTACTTATAACATGCTAAAGGTTGCTCGACACTTGTTTCGGTGGACCAAAGCAATGGCCTATGCAGATTATTATGAGCGTGCTTTAACAAATGGTGTGCTCAGCATCCAAAGAGGTAGTGAGCCTGGGATCATGATTTATATGCTTCCCCAAGCACCAGGAAGTTCTAAGGCTGTTACCTATCATGGTTGGGGTACAAAATATGATTCATTCTGGTGCTGTTATGGTACAGCCACGGAGTCATTCTCAAAATTGGGGGACTCTATATACTTCCAAGAAGAAGGCGCTAGTCCTAGTTTGTATATCATTCAATTTATATCTAGCATGCTTACTTGGGATGCAGCAGGACTTACTTTAAAGCAAGTGGTTCAACCATTGTCATCGTGGGACCCAAACCTCCATGTGTCATTGGAGTTCTCAACATTCAAGGCTGCAAAGACAGAGAATGAATTATCTAGTGTGAATATACGGATACCGTTTTGGACAGATACAGACAGTGCACAAGCAATGCTGAATGGAGAAAATCTATCATTACCAGACCCAGGAAGCTTTTTGACAGTTACAAAGAAATGGATATCAGGGGACAAGTTGTCTTTATCATTTCCAGTTAGCCTTAGGACAGAAAGCATTCAAGATGATCGCCCTCAGTTTCAATCAGTTCAGGCAATCTTGTTTGGCCCTTACCTGCTAGCTGGCATGACCGATGGAGAATGGGACCTAAACATAGGAAACACAAATTCATTTTCTGATTGGATCACATCTGTTCCTCCTGACTTTGCTTCGCAGTTACACACTTTTAGTCAAGAATGGAAGATATCTGGTTCAAATGAATCCAAGAACAACACCCTTGTAATTACATACAACAATGTTTCAAAATCAATAATAATGGATTCTTTTCCAGAGGAAGGGACAAATGAGGCAGCGCATGCTACTTTCAGAATTGTAGATACTAATGTAAAGACTAGTCACAAAAGGATAAGAAATTCAGATTCAGCCATGGATTTTGTGGGAAAGACAGTTTATCTGGAGCTCTTTGGTCATCCTGGAATGGTTATTACCCATCAGGGAATCCATAATAATTTGACTGTTTCACAGCAAGATGAGGTTAGCCTGGCAGATAAAGATCAGTGTTCTGTGAGACCTTGCATGACACTGTCGGTGGACAGGGCGACCATCTTCAAAGTACACACAGGATTGGATGGGAATAATAATTCTCTCTCTTTTGAGTCTGTAAATTTTCGTGGTTGCTTTCTATATGGAGGGACACGTTATGGACAAGCTGTTCAACTGCAGTGCAAGCCTACAAAAAGGGATTTGGATTTCAACCATGCAGTTAGCTACAATGCAAACACAGGACTCAGTGCATATCATCCAATCAGTTTCATTGCTACTGGTGCAAAGAGAAGCTACCTTCTTGCACCTCTTTTGGCCTTCAGGGATGAATCTTATACAGTGTATTTCCACATCACTAGTTGA___ACCCATTTTCCTAAACATGTCTCCAAATAGATTAGGGTAGACTAAAGCCACTTTGCATGAGTTTAGCTTCATTAAAATCTGTTCAGCACTCTGTTAAGAATAGTTTGCAGTACATTCCCATTAACTGTATTTATTCACTGACTCTTAAGCTATGTATTTTTAATTAAATAGTCCAAGATATGTTCTCTTAATTACCTTAAGGTACCTGCCTGTGCCAAATAGCTCGTTGCTACCAATGTAAAATCAGTTTTAAGTTTTAATAGCAATTGATCATTTAGAAATAATGATTATGACAT

Fln Alignment:

Contig9758___LAVQADSISGFHANTHIPLVIGSQMRYEVTGDPLYKEIGTFFMDIVNSSHAYATGGTSVSEFWSDPKRLATTLGRENEESCTTYNMLKVARHLFRWTKAMAYADYYERALTNGVLSIQRGSEPGIMIYMLPQAPGSSKAVTYHGWGTKYDSFWCCYGTATESFSKLGDSIYFQEEGASPSLYIIQFISSMLTWDAAGLTLKQVVQPLSSWDPNLHVSLEFSTFKAAKTENELSSVNIRIPFWTDTDSAQAMLNGENLSLPDPGSFLTVTKKWISGDKLSLSFPVSLRTESIQDDRPQFQSVQAILFGPYLLAGMTDGEWDLNIGNTNSFSDWITSVPPDFASQLHTFSQEWKISGSNESKNNTLVITYNNVSKSIIMDSFPEEGTNEAAHATFRIVDTNVKTSHKRIRNSDSAMDFVGKTVYLELFGHPGMVITHQGIHNNLTVSQQDEVSLADKDQCSVRPCMTLSVDRATIFKVHTGLDGNNNSLSFESVNFRGCFLYGGTRY--GQAVQLQCKPTKRDLDFNHAVSYNANTGLSAYHPISFIATGAKRSYLLAPLLAFRDESYTVYFHI
B9GM82______________LAVQAEDISGFHANTHIPIVIGAQMRYEITGDPLYKDIGTFFMDIVNSSHSYATGGTSVSEFWSDPKRLASTLQTENEESCTTYNMLKVSRHLFRWTKEMAYADYYERALTNGVLGIQRGTEPGVMIYMLPQHPGSSKGKSYHGWGTLYDTFWCCYGTGIESFSKLGDSIYFEEEGEAPGLYIIQYISSSLDWKSGQIMINQKVDPVVSSDPYLRVTF---TFSPNKGSSQASTLNLRIPVWTHLDGATATINSQSLAIPAPGSFLSVNRKWSSGDKLSLQLPISLRTEAIQDDRHQYASIQAILYGPYLLAGHTSGDWNLKAGSAGSLSDSITPIPASYNEQLVSFSQ--------DSGNSTFVLT--NSNQSITMEEHPKSGTDACLQATFRIVFNDSSSSEVLGIN-----DVIDKSVMLEPFDLPGMLLVQQGKDSSLAVTN----SAAD--------------DGSSIFHVVLGLDGKDGTVSLESGSQEGCYIYSGVNYKSGQSMKLSCKLGSSDPGFNQGASFVMNKGLSEYHPISFVAEGDKRNFLLAPLHSLRDEFYTIYFNI

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
324	33	66			0.997452
325	33		66		0.997452
328		66		33	0.997452
391		12		87	0.992554
395		87		12	0.992554
814	83		16		0.994512
815	83		16		0.994512
816			16	83	0.994512
914		85	14		0.993533
915		14	14	71	0.984337
916			14	85	0.993533
986	85	14			0.993533
1328	12		87		0.992554
1407	15		84		0.999986
1786	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain