SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9725

Length: 2825 nt

UniGene Fasta

>sp_v3.0_unigene9725
CGTCGTGACCTTGGCTGTCACTCAATGGCGGTCGAGGCGAAGAGGGTTGGAGTGAGGGTTTTAGGGCCTGAGAGGAGCCGATAAAGCGACGGTAGCGCGTCAGAGGGATTTTCTAAACAGACGTCCGATCTAGCTTGCTGCATGATTTTTAAAGTTTAGGTCTTTTGAAGCTCCTGATCAGTTCGGAAGAAGGAGAAAGCGATGGCTTTAGGTTCGCTATTGGTGTCCAGGCTTGCAAGGTCTCAGTCGAAGGGTATCGCTTCAAATGTTGTTCAATCTGCATATCTGGCTACACAGAATATTAAATCTTCAAACTTTGGTTCGCCACTGATACAGAGATGGGGAAATGCAGCCAGAGCTTTCAGCTCAAAGGGAGCTGGTAATGATGTGATTGGTATTGATTTGGGAACAACAAATTCATGTGTTGCTCTCATGGAAGGCAAGAACCCCAAAGTCATTGAAAACTCAGAAGGTGCACGGACAACCCCATCTGTTGTTGCTTTTAATCAAAAGGGAGAGCTTCTTGTAGGCACTCCTGCTAAGCGACAAGCTGTGACAAATCCAACAAACACAGTGTTTGGAACAAAGCGTTTGATAGGAAGGCGATTTGATGACCCACAGACGCAGAAAGAGATGAAGATGGTCCCATACAAAATTGTTAAGGCAACCAATGGTGATGCCTGGGTTGAAGTAAATGGGAACCAGTATTCGCCGAGTCAGATTGGAGCATTCATCTTGACAAAGATGAAAGAAACAGCTGAAGCTTATCTAGGGAGGTCTGTATCAAATGCAGTCATTACAGTGCCGGCCTATTTCAATGATGCTCAGCGTCAAGCAACTAAAGATGCTGGAAAAATTGCTGGTTTAGATGTGAAAAGAATTATCAATGAACCAACAGCAGCTGCCCTTTCATATGGTATGAATAACAAGGAAGGTTTGGTTGCTGTTTTTGATCTCGGCGGTGGAACTTTTGATGTTTCAATACTTGAAATATCTAATGGTGTTTTTGAGGTGAAAGCCACAAATGGTGATACCTTCTTGGGTGGTGAGGATTTTGATAACACTTTACTTGACTATCTTGTTTCGGAGTTCAAAAAATCAGAAGGCATCGACTTGTCTAAAGATAGGTTGGCCTTGCAAAGGTTGAGAGAGGCTGCAGAGAAGGCGAAGGTGGAATTGTCATCTTCTTCGCAGACTGATGTTAATCTGCCATTTATCACAGCAGATGCATCTGGGGCCAAGCATTTGAATATCACTTTAACTCGATCAAAGTTTGAAAATTTGGTTAATCACTTAATTGAGAGAACCAGAGATCCTTGCAAGAATTGCTTGAAAGATGCGGGGGTCTCAATAAAGGAAGTGGATGAAGTGCTTCTTGTAGGAGGTATGACTCGAGTGCCTAAGGTTCAAGAAATTGTATCAGAGATCTTTGGTAAGCAACCAAGTAAAGGTGTGAACCCTGATGAGGCCGTTGCCATGGGTGCTGCCATTCAGGGTGGTATACTTCGTGGTGATGTGAAAGAGTTACTTCTTCTTGATGTTACTCCTCTGTCATTGGGAATTGAAACTCTTGGTGGTGTATTTACACGGCTTATCAACAGAAACACCACAATTCCAACAAAGAAAAGTCAGGTGTTTTCAACTGCTGCAGATGGTCAAACTCAGGTAGGAGTGAGAGTATTGCAAGGTGAGCGTGAAATGGCTTCAGATAATAAGCTGCTTGGTGAGTTCGAGCTTGTTGGCATTCCACCAGCACCCAGAGGTGTACCTCAAATAGAGGTTACCTTCGACATTGATGCAAATGGTATTGTGACTGTATCTGCTAAAGACAAAGCCACGAACAAGGAACAGAATATCACTATCCGGTCGTCTGGAGGACTGACAGAAGACGAGATACAGAAAATGGTGAGAGAGGCTGAGATGCATGCTCAAAAAGATCAGGAAAAGAAGGCATTAATCGATGCTAGAAATGCTGCAGACAGCACGATATACTCAGTAGAGAAGAGTTTGAGCGAATATAAAGACAAACTTTCTTCAGATGTCATTTCTGAAATAGAGTCAGCTGTAACAGACTTAAAGAAAGCAATGGCTAATGATGATGTTGAAGATATCAAAGCAAAAACTGATGCAGCAACTGCAGCATCCTTGAAAATAGGCCAGAGTGTGCAGCAACAATCTGGTGGCTCATCCTCTGGTTCTCAAGGTGGATCTCAAGGCGGAGACCAGGCACCAGAGGCTGAATATGAAGAGGTCAAGAAGTGATTTAGGCAATTGAGGTCGAATCTGAGGTTATCTAGGAGATGCTAGGTACAAAATTACTAGTTTGAAAATTCAAAACTGTTATAAGCAAATATTTAGATTTGCTTAATGCAGGCATTTTTGTTCTGAGCAAGAAATATTATTTTTTCCATGTTATGACTGTTGACTCTGAACAGGAGAAATCTGTAGTTTATCATATTTGAACTCTACAAAATTCTTCTCTAGAGCTACTCTTTTGTTCTTTAATGACTGTTACCTTATTCAAGTGGTCCATGATTTTGTCGTGGTGTTTGCGTGGAGTATCTGAGCTTTTTGATTAAGATCCAGGGAACATTTTAGCTTTTCAGTCGATGGAAAAATCCAATGATTATATGCCGTTACATGCCGTTCCGGATGAACCTAATTATGCTTCTTGTAGTCAGTGTTAATATTTTCGGTGATCTATTTATTGTTTGAATTGTCTTGATAAAATTGCTTTCCAGGTGGTCCATTAGTTGCTTGTTCTGTAGAAACACAAATGTATTTTACAAATGCCTAGGCCCTACAGGCATTTTATTAACAGCAAC

Ace file of the UniGene sp_v3.0_unigene9725

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock 70 kDa protein, mitochondrial n=3 Tax=rosids RepID=HSP7M_PHAVU	-	-	80%
FL-Next	sp=Heat shock 70 kDa protein, mitochondrial; Phaseolus vulgaris (Kidney bean) (French bean).	-	-	81%
Sma3	Heat shock 70 kDa protein, mitochondrial	-	-	-

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chaperone DnaK	IPR012725	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G09590.1	MTHSC70-2, HSC70-5 mitochondrial HSO70 2 chr5:2975721-2978508 FORWARD LENGTH=682	82%
RefSeq	Arabidopsis thaliana	NP_196521.1	mitochondrial HSO70 2 [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002313955.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q01899

Fln msg:

Fln protein: MALGSLLVSRLARSQSKGIASNVVQSAYLATQNIKSSNFGSPLIQRWGNAARAFSSKGAGNDVIGIDLGTTNSCVALMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVKATNGDAWVEVNGNQYSPSQIGAFILTKMKETAEAYLGRSVSNAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALSYGMNNKEGLVAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLDYLVSEFKKSEGIDLSKDRLALQRLREAAEKAKVELSSSSQTDVNLPFITADASGAKHLNITLTRSKFENLVNHLIERTRDPCKNCLKDAGVSIKEVDEVLLVGGMTRVPKVQEIVSEIFGKQPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADGQTQVGVRVLQGEREMASDNKLLGEFELVGIPPAPRGVPQIEVTFDIDANGIVTVSAKDKATNKEQNITIRSSGGLTEDEIQKMVREAEMHAQKDQEKKALIDARNAADSTIYSVEKSLSEYKDKLSSDVISEIESAVTDLKKAMANDDVEDIKAKTDAATAASLKIGQSVQQQSGGSSSGSQGGSQGGDQAPEAEYEEVKK*

Protein Length: 688

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGCGGTCGAGGCGAAGAGGGTTGGAGTGAGGGTTTTAGGGCCTGAGAGGAGCCGATAAAGCGACGGTAGCGCGTCAGAGGGATTTTCTAAACAGACGTCCGATCTAGCTTGCTGCATGATTTTTAAAGTTTAGGTCTTTTGAAGCTCCTGATCAGTTCGGAAGAAGGAGAAAGCG_-_ATGGCTTTAGGTTCGCTATTGGTGTCCAGGCTTGCAAGGTCTCAGTCGAAGGGTATCGCTTCAAATGTTGTTCAATCTGCATATCTGGCTACACAGAATATTAAATCTTCAAACTTTGGTTCGCCACTGATACAGAGATGGGGAAATGCAGCCAGAGCTTTCAGCTCAAAGGGAGCTGGTAATGATGTGATTGGTATTGATTTGGGAACAACAAATTCATGTGTTGCTCTCATGGAAGGCAAGAACCCCAAAGTCATTGAAAACTCAGAAGGTGCACGGACAACCCCATCTGTTGTTGCTTTTAATCAAAAGGGAGAGCTTCTTGTAGGCACTCCTGCTAAGCGACAAGCTGTGACAAATCCAACAAACACAGTGTTTGGAACAAAGCGTTTGATAGGAAGGCGATTTGATGACCCACAGACGCAGAAAGAGATGAAGATGGTCCCATACAAAATTGTTAAGGCAACCAATGGTGATGCCTGGGTTGAAGTAAATGGGAACCAGTATTCGCCGAGTCAGATTGGAGCATTCATCTTGACAAAGATGAAAGAAACAGCTGAAGCTTATCTAGGGAGGTCTGTATCAAATGCAGTCATTACAGTGCCGGCCTATTTCAATGATGCTCAGCGTCAAGCAACTAAAGATGCTGGAAAAATTGCTGGTTTAGATGTGAAAAGAATTATCAATGAACCAACAGCAGCTGCCCTTTCATATGGTATGAATAACAAGGAAGGTTTGGTTGCTGTTTTTGATCTCGGCGGTGGAACTTTTGATGTTTCAATACTTGAAATATCTAATGGTGTTTTTGAGGTGAAAGCCACAAATGGTGATACCTTCTTGGGTGGTGAGGATTTTGATAACACTTTACTTGACTATCTTGTTTCGGAGTTCAAAAAATCAGAAGGCATCGACTTGTCTAAAGATAGGTTGGCCTTGCAAAGGTTGAGAGAGGCTGCAGAGAAGGCGAAGGTGGAATTGTCATCTTCTTCGCAGACTGATGTTAATCTGCCATTTATCACAGCAGATGCATCTGGGGCCAAGCATTTGAATATCACTTTAACTCGATCAAAGTTTGAAAATTTGGTTAATCACTTAATTGAGAGAACCAGAGATCCTTGCAAGAATTGCTTGAAAGATGCGGGGGTCTCAATAAAGGAAGTGGATGAAGTGCTTCTTGTAGGAGGTATGACTCGAGTGCCTAAGGTTCAAGAAATTGTATCAGAGATCTTTGGTAAGCAACCAAGTAAAGGTGTGAACCCTGATGAGGCCGTTGCCATGGGTGCTGCCATTCAGGGTGGTATACTTCGTGGTGATGTGAAAGAGTTACTTCTTCTTGATGTTACTCCTCTGTCATTGGGAATTGAAACTCTTGGTGGTGTATTTACACGGCTTATCAACAGAAACACCACAATTCCAACAAAGAAAAGTCAGGTGTTTTCAACTGCTGCAGATGGTCAAACTCAGGTAGGAGTGAGAGTATTGCAAGGTGAGCGTGAAATGGCTTCAGATAATAAGCTGCTTGGTGAGTTCGAGCTTGTTGGCATTCCACCAGCACCCAGAGGTGTACCTCAAATAGAGGTTACCTTCGACATTGATGCAAATGGTATTGTGACTGTATCTGCTAAAGACAAAGCCACGAACAAGGAACAGAATATCACTATCCGGTCGTCTGGAGGACTGACAGAAGACGAGATACAGAAAATGGTGAGAGAGGCTGAGATGCATGCTCAAAAAGATCAGGAAAAGAAGGCATTAATCGATGCTAGAAATGCTGCAGACAGCACGATATACTCAGTAGAGAAGAGTTTGAGCGAATATAAAGACAAACTTTCTTCAGATGTCATTTCTGAAATAGAGTCAGCTGTAACAGACTTAAAGAAAGCAATGGCTAATGATGATGTTGAAGATATCAAAGCAAAAACTGATGCAGCAACTGCAGCATCCTTGAAAATAGGCCAGAGTGTGCAGCAACAATCTGGTGGCTCATCCTCTGGTTCTCAAGGTGGATCTCAAGGCGGAGACCAGGCACCAGAGGCTGAATATGAAGAGGTCAAGAAGTGA___TTTAGGCAATTGAGGTCGAATCTGAGGTTATCTAGGAGATGCTAGGTACAAAATTACTAGTTTGAAAATTCAAAACTGTTATAAGCAAATATTTAGATTTGCTTAATGCAGGCATTTTTGTTCTGAGCAAGAAATATTATTTTTTCCATGTTATGACTGTTGACTCTGAACAGGAGAAATCTGTAGTTTATCATATTTGAACTCTACAAAATTCTTCTCTAGAGCTACTCTTTTGTTCTTTAATGACTGTTACCTTATTCAAGTGGTCCATGATTTTGTCGTGGTGTTTGCGTGGAGTATCTGAGCTTTTTGATTAAGATCCAGGGAACATTTTAGCTTTTCAGTCGATGGAAAAATCCAATGATTATATGCCGTTACATGCCGTTCCGGATGAACCTAATTATGCTTCTTGTAGTCAGTGTTAATATTTTCGGTGATCTATTTATTGTTTGAATTGTCTTGATAAAATTGCTTTCCAGGTGGTCCATTAGTTGCTTGTTCTGTAGAAACACAAATGTATTTTACAAATGCCTAGGCCCTACAGGCATTTTATTAACAGCAAC

Fln Alignment:

Contig9725___NVVQSAYLATQNIKSSNFGSPLIQRWGNAARAFSSKGAGNDVIGIDLGTTNSCVALMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVKATNGDAWVEVNGNQYSPSQIGAFILTKMKETAEAYLGRSVSNAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALSYGMNNKEGLVAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLDYLVSEFKKSEGIDLSKDRLALQRLREAAEKAKVELSSSSQTDVNLPFITADASGAKHLNITLTRSKFENLVNHLIERTRDPCKNCLKDAGVSIKEVDEVLLVGGMTRVPKVQEIVSEIFGKQPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADGQTQVGVRVLQGEREMASDNKLLGEFELVGIPPAPRGVPQIEVTFDIDANGIVTVSAKDKATNKEQNITIRSSGGLTEDEIQKMVREAEMHAQKDQEKKALIDARNAADSTIYSVEKSLSEYKDKLSSDVISEIESAVTDLKKAMANDDVEXXXXXXXXXXXXSLKIXXXXXXXXXXXXXXXXXXXXXXXXAPEAEYEEVKK
Q01899______________DVASATFSAYRSLTGSTKPAYVAQKWSCLARPFSSRPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTKAPCKSCLKDANVSIKDVDEVLLVGGMTRVPKVQEVVLNIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDEIEKMVKEAELHAQKDQERKTLIDIRNSADTTIYSIEKSLGEYREKIPSETAKEIEDAVSDLRKAMSGDNVDEIKSKLDAANKAVSKI-GEHMSGGSSGGSSAGGSQGGGDQAPEAEYEEVKK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
152	33			66	0.997452
201	33		66		0.997452
451		87		12	0.992554
543	90		10		0.90298
1343			85	14	0.993533
2046	92		7		0.999532
2372	10		89		0.999919
2471		92		7	0.999999
2472	92		5	2	0.990091
2473	94		5		0.997984
2474	94		5		0.997984
2482		25		75	1.0
2517		82		17	1.0
2523	11			88	1.0
2524		80		20	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain