SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9723

Length: 1472 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9723

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitochondrial ferredoxin 1 [Arabidopsis thaliana] emb\|CAB81087.1\| putative protein [Arabidopsis thaliana] dbj\|BAB79226.1\| MFDX1 [Arabidopsis thaliana] gb\|AAL38756.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14263.1\| unknown protein [Arabidopsis thalia	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	MFDX2	-	-	2.452e-08	-

Source	Gene names
Sma3	AT4G21090; AT4g21090; At4g05450; At4g21090; AtMFDX1; AtMFDX2; AtMFDX2pre; CHLREDRAFT_154720; F7J7.30; GSVIVT00016385001; MFDX1; MICPUCDRAFT_22237; MICPUN_98372; OJ1328_D07.22; OJ1567_G09.131-1; OJ1567_G09.131-2; OSTLU_40562; OSTLU_8463; Os07g0110300; Os09

Source	GOs	Term	Type	e value	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	0.0	-
Sma3	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	Adrenodoxin	IPR001055	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	Adrenodoxin, iron-sulphur binding site	IPR018298	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G05450.1	ATMFDX1, MFDX1 mitochondrial ferredoxin 1 chr4:2759048-2760634 FORWARD LENGTH=197	62%
RefSeq	Arabidopsis thaliana	NP_192454.1	mitochondrial ferredoxin 1 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002332077.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9G4

Fln msg: Separated hits, possible frame ERROR between 852 and 854, your sequence is longer than subject: 327 - 267

Fln protein: MGEESHADRHSFLIFSAAGSSHPVPNGNKTFSLLLDPPLFIRTKNPEFKPQFDEKSMGLLCRLTTLFYRELHGLGLPEACHPNGKLNPANYSFDQFRVWRMGISKAFQMQPFAPERPPYEETMKERLPEPLSFDLYRSRCSSDHRGRAIASSERCWLNEGRKALKWEPNRIISDQMKYKRNTHSLQKRNFASESDKANEHQQEANTETISVTFVDKDGEEKTVKVPVGMSMLEAAHENDIDLEGACEGSLACSTCHIIVMDEDYYNNLPEPTDEENDMLDLAFxxLTETSRLGCQVIAKPELDGMKVALPAATRNFAVDGYVPKPH*

Protein Length: 328

Fln nts: _-_ATGGGGGAAGAATCCCATGCCGACAGACACTCATTCTTAATTTTCTCGGCGGCGGGGTCATCTCATCCAGTTCCAAATGGCAATAAAACTTTTTCTTTACTTCTAGATCCTCCACTATTTATCAGAACCAAGAACCCAGAGTTCAAGCCTCAGTTTGATGAGAAATCCATGGGACTTCTGTGTCGCCTGACAACTCTATTCTACCGGGAGCTTCACGGATTAGGGCTTCCCGAAGCTTGTCATCCGAATGGAAAGCTTAATCCGGCGAATTATTCATTTGATCAGTTTAGGGTTTGGAGAATGGGGATTTCCAAAGCATTTCAAATGCAGCCATTTGCACCCGAAAGACCACCTTACGAGGAAACGATGAAAGAACGCTTGCCGGAGCCACTGTCCTTCGATTTATACAGGTCAAGATGCTCGTCGGATCACCGGGGCAGGGCGATTGCATCGTCGGAGAGGTGCTGGTTAAACGAAGGCCGGAAGGCCTTAAAATGGGAGCCAAACCGTATTATTAGTGACCAGATGAAGTATAAGAGAAACACCCATTCTCTCCAGAAGAGGAATTTCGCATCAGAGTCGGATAAAGCCAATGAACACCAGCAAGAAGCTAACACTGAAACAATCTCGGTAACATTTGTTGACAAGGATGGTGAAGAAAAGACTGTGAAAGTGCCAGTTGGAATGTCGATGCTTGAAGCTGCTCATGAGAATGACATAGACCTTGAAGGGGCATGCGAAGGATCACTTGCCTGTTCTACTTGTCATATTATTGTCATGGATGAGGATTACTATAACAATCTACCGGAGCCAACAGATGAAGAGAATGACATGTTAGATCTTGCTTTTGGxxxCCTTACAGAGACGTCTCGGTTGGGTTGTCAAGTCATTGCTAAGCCGGAGCTTGATGGGATGAAAGTTGCTTTGCCAGCTGCCACAAGGAATTTTGCTGTAGATGGATATGTTCCCAAGCCCCATTAG___GATGTGGTTTTGAAGATGATATTATCTTGATCATCGTTCTTATTCTTGTAACAACAATCCACATTACTTTTATTATGGAGTCATTGCATCTTTTGTAATGAGAGCAATAATGATTTTTGCTTCGTTCTGCCCAAGCATTTTTGTGGATTGTTTAATAAGTCTGAAAATTATTGGTTCTGGCAAAAGTTGATATTGCCCCGCTGCTAGAACCTTTCCTCTCAACTAAGGTCAGCTGTTTTCCTTCAAGGATCAATTACATTGACGATAATGATAGCAAAATCCCACATTTGTTATCTTGATGATGCAAAATTTAAAGGTGCTTCCACAAATGCCACCCGGATCAGTTGTAACTGCATGCATTTGGGAAATTTTCTTTGGATATGCTATGCATGTATTACCAAGTAGCTCAGGAGTCTAAATATATGCGGTGTGGCCCAGAAACTACTTTCTCGTTCAAAAACTAGATATTCAATATAGCAGGTGATTAAATTGC

Fln Alignment:

Contig9723___MGLLCRLTTLFYRELHGLGLPEACHPNGKLNPANYSFDQFRVWRMGISKAFQMQPFAPERPPYEETMKERLPEPLSFDLYRSRCSSDHRGRAIASSERCWLNEGRKALKWEPNRIISDQMKYKRNTHSLQKRNFASESDKANEHQQEANTETISVTFVDKDGEEKTVKVPVGMSMLEAAHENDIDLEGACEGSLACSTCHIIVMDEDYYNNLPEPTDEENDMLDLAFGxLTETSRLGCQVIAKPELDGMKVALPAATRNFAVDGYVPKPH
D5A9G4______________MALLCRRKTLLYRELHGLGLRESYYSNGKFNRVISSFDQFRVSRMGISKAVQMQP-AVKKPSDEEMTKERLPEPRPFDLYRSICSSDRRGGAVAALEG-WLNGGRKAAKWEPNRVISDPMKYKRDIHALQKRNFASESDKADENQQEANTETISVTFVDKDGEENTIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVILMDEDYYNKLPEPTDEENDMLDLAFGxLTETSRLGCQVIAKPELDGMKVALPAATRNFAVDGYVPKPH

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
550		33		66	1.0
557	33			66	0.997452
560		66		33	0.997452
1256	14		85		0.993533
1257		85	14		0.993533
1259	85	14			0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain