SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9701

Length: 2006 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene9701
GAAATAAGGATATGGCGATAAGGATATGGGATGGATCACACTGGCTAGGTTATTTGGGTTTTCAAAATCTACAGGACAAGTGCCTCATAGAGGTGCACAGTGGAAAGATACATATGCATGATATCCTGCAAGATCTGGGTAGACAAATTGAAGAGGCTTCGACAGCGGCGCGTCGTTTTTGGCTTAAGCCTAATTATTTTGTACATCATTATTATTTTGGAAGGATGGATCAGAGGGAAGCGAGGGGAATTCGGATGCGTGGTGTGTCTACGCTCGCGAGTGTCGGAGATTATGGACGAAGTCGTCTTTTTATGTGGAAGTTGGGACTTCTTGATACCGAGGGTCATCTGTTGGAGCTCTTTTTGAACCTAGTGCAGGCACCAAATCTCATATGGCTTCGTTGGTCGAATTGTCCTACCCGTTCACTGGATCCCTGGATCCCAATTGAAAATTTAAGGGTTTTACATGTGATGGGGAGTTTTTTGGAAACATTGTGGAAAGACGAGTCTCAGGCACCTGTGGAGTTGCGCGAGTTAGTTATTGTTGCTCCTCTCTTAAAATTACCAGAATCCATAGGGCTGTTGAAGAAGCTAGAAGTGATTGTCCTAGACAATCAGACGAGTAATCTAGAAAGTTTGCCAAACGAAATTTGTCAGCTGCGGTCCTTGAAACACTTTGAGTTAACAAATTGCTCAAAAATAACATCTCTTCCATATTTCTTCGGAAAAATAATTAATCTCCAACATATCGATCTGTCTCACTCCTACTACTTGCGGACCCTTCCAAAGTCCTTCGCTGAATTAATTCAGCTTAAATATCTTGATTTGAGTTATTGCTATAATTTAACTATGTCAAGCGACACACTTGGTGATATCAACACGCTTGAATCCATAGATATTTCTTATTGTCCAAAAATTAAAACCTTGCCTCCCCAAGTCGGCCGTCAACGGTCCCTGCAGAACTTACATTTCTTGGGTACACACTTCAAAGAATTGCCAGGTGCCATTGGAAAACTCATGGATTTGGAATTTCTCGTTATACAATGTCCTTTCCTGGAAATGCTGCCGTCTTCATTGGGTAACCTAACGAACTTGAAGGAATTGATGCTCCGGCACTGCAAAGCCTTGAAATGTTTAACGGATTCTATTAAACTGTTGAATAGGGTAATAGTTTATGATTGTGGGTTCAGTGAACTGTCCTTCAAAAGGCTTGAAGGAGAAACAGAAGTATTAAGACGGTCGAAAGACAAAGCAATATTGAATGATTTTGACTCTTCCATTGACAGGTACATGCCTCGGCTCCCAGTCCGGATCAGAGAAACAGAAAAATCAAGACCATCGAAAGGTATCAAAATATTGAGTAACCTGGATTCTTCCATTGACAGGTACATGCCTCGGCCTCCCCTCGAGATCAACAGAGAAATACCAGCGGTATCAGTTCCCAGGCTTCAGCATCTCCTCGTTGAGTCTTGTAATGATCTGGTGGTGGTTGGAACATTGCCAAATACTCTCATAACACTGCAACTGAAACTGTGTCATAATTTGAGAAAAATAGAAGGGCTTGGTAGTCTTACAAAACTTCAAATGCTGGACATCAGTCAGTGCACAGAATTGGAGGAGCTGACGAGTATTGAAACATTGGTATCGCTGGGGGCATTGGATGCATGTGGATGTGTTAAACTGAAGATCATACGGGGGTTTGCGCAGCTCGAAAACCTTCGAGTGCTTGATGTTTCCGGGTGCTTAGAGTTAGAAGAACTTCAAGGTGTGGAGCATTTGGGTTCTTCTCTGGAGATGTTCAAGGCCACTAAATGTCCCAAACTGCAGTGTGATCAGTTGCCACTAAGATTAACATTCCTCCTCCAAGCATCTTCATTCCAGGCATTTTCATGGCGATGGCGGTCACAACAGGTTATGTGTATGGCTCTTTTGCTTATAACATTTACTTGTAATAATCCTGCTTGGCCATGGCGCTCAAGACAGGTCATGTGTCTGGCTATTGTACGC

Ace file of the UniGene sp_v3.0_unigene9701 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	0.0	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	NBS	-	-	5.848e-06	-

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMZ7

Fln msg: STOP codon was not found. Distance to subject end: 42 aas, No stop codon before M and low homology subject, your sequence is longer than subject: 665 - 618

Fln protein: MAIRIWDGSHWLGYLGFQNLQDKCLIEVHSGKIHMHDILQDLGRQIEEASTAARRFWLKPNYFVHHYYFGRMDQREARGIRMRGVSTLASVGDYGRSRLFMWKLGLLDTEGHLLELFLNLVQAPNLIWLRWSNCPTRSLDPWIPIENLRVLHVMGSFLETLWKDESQAPVELRELVIVAPLLKLPESIGLLKKLEVIVLDNQTSNLESLPNEICQLRSLKHFELTNCSKITSLPYFFGKIINLQHIDLSHSYYLRTLPKSFAELIQLKYLDLSYCYNLTMSSDTLGDINTLESIDISYCPKIKTLPPQVGRQRSLQNLHFLGTHFKELPGAIGKLMDLEFLVIQCPFLEMLPSSLGNLTNLKELMLRHCKALKCLTDSIKLLNRVIVYDCGFSELSFKRLEGETEVLRRSKDKAILNDFDSSIDRYMPRLPVRIRETEKSRPSKGIKILSNLDSSIDRYMPRPPLEINREIPAVSVPRLQHLLVESCNDLVVVGTLPNTLITLQLKLCHNLRKIEGLGSLTKLQMLDISQCTELEELTSIETLVSLGALDACGCVKLKIIRGFAQLENLRVLDVSGCLELEELQGVEHLGSSLEMFKATKCPKLQCDQLPLRLTFLLQASSFQAFSWRWRSQQVMCMALLLITFTCNNPAWPWRSRQVMCLAIVR

Protein Length: 666

Fln nts: GAAATAAGGAT_-_ATGGCGATAAGGATATGGGATGGATCACACTGGCTAGGTTATTTGGGTTTTCAAAATCTACAGGACAAGTGCCTCATAGAGGTGCACAGTGGAAAGATACATATGCATGATATCCTGCAAGATCTGGGTAGACAAATTGAAGAGGCTTCGACAGCGGCGCGTCGTTTTTGGCTTAAGCCTAATTATTTTGTACATCATTATTATTTTGGAAGGATGGATCAGAGGGAAGCGAGGGGAATTCGGATGCGTGGTGTGTCTACGCTCGCGAGTGTCGGAGATTATGGACGAAGTCGTCTTTTTATGTGGAAGTTGGGACTTCTTGATACCGAGGGTCATCTGTTGGAGCTCTTTTTGAACCTAGTGCAGGCACCAAATCTCATATGGCTTCGTTGGTCGAATTGTCCTACCCGTTCACTGGATCCCTGGATCCCAATTGAAAATTTAAGGGTTTTACATGTGATGGGGAGTTTTTTGGAAACATTGTGGAAAGACGAGTCTCAGGCACCTGTGGAGTTGCGCGAGTTAGTTATTGTTGCTCCTCTCTTAAAATTACCAGAATCCATAGGGCTGTTGAAGAAGCTAGAAGTGATTGTCCTAGACAATCAGACGAGTAATCTAGAAAGTTTGCCAAACGAAATTTGTCAGCTGCGGTCCTTGAAACACTTTGAGTTAACAAATTGCTCAAAAATAACATCTCTTCCATATTTCTTCGGAAAAATAATTAATCTCCAACATATCGATCTGTCTCACTCCTACTACTTGCGGACCCTTCCAAAGTCCTTCGCTGAATTAATTCAGCTTAAATATCTTGATTTGAGTTATTGCTATAATTTAACTATGTCAAGCGACACACTTGGTGATATCAACACGCTTGAATCCATAGATATTTCTTATTGTCCAAAAATTAAAACCTTGCCTCCCCAAGTCGGCCGTCAACGGTCCCTGCAGAACTTACATTTCTTGGGTACACACTTCAAAGAATTGCCAGGTGCCATTGGAAAACTCATGGATTTGGAATTTCTCGTTATACAATGTCCTTTCCTGGAAATGCTGCCGTCTTCATTGGGTAACCTAACGAACTTGAAGGAATTGATGCTCCGGCACTGCAAAGCCTTGAAATGTTTAACGGATTCTATTAAACTGTTGAATAGGGTAATAGTTTATGATTGTGGGTTCAGTGAACTGTCCTTCAAAAGGCTTGAAGGAGAAACAGAAGTATTAAGACGGTCGAAAGACAAAGCAATATTGAATGATTTTGACTCTTCCATTGACAGGTACATGCCTCGGCTCCCAGTCCGGATCAGAGAAACAGAAAAATCAAGACCATCGAAAGGTATCAAAATATTGAGTAACCTGGATTCTTCCATTGACAGGTACATGCCTCGGCCTCCCCTCGAGATCAACAGAGAAATACCAGCGGTATCAGTTCCCAGGCTTCAGCATCTCCTCGTTGAGTCTTGTAATGATCTGGTGGTGGTTGGAACATTGCCAAATACTCTCATAACACTGCAACTGAAACTGTGTCATAATTTGAGAAAAATAGAAGGGCTTGGTAGTCTTACAAAACTTCAAATGCTGGACATCAGTCAGTGCACAGAATTGGAGGAGCTGACGAGTATTGAAACATTGGTATCGCTGGGGGCATTGGATGCATGTGGATGTGTTAAACTGAAGATCATACGGGGGTTTGCGCAGCTCGAAAACCTTCGAGTGCTTGATGTTTCCGGGTGCTTAGAGTTAGAAGAACTTCAAGGTGTGGAGCATTTGGGTTCTTCTCTGGAGATGTTCAAGGCCACTAAATGTCCCAAACTGCAGTGTGATCAGTTGCCACTAAGATTAACATTCCTCCTCCAAGCATCTTCATTCCAGGCATTTTCATGGCGATGGCGGTCACAACAGGTTATGTGTATGGCTCTTTTGCTTATAACATTTACTTGTAATAATCCTGCTTGGCCATGGCGCTCAAGACAGGTCATGTGTCTGGCTATTGTACGC

Fln Alignment:

Contig9701___MHDILQDLGRQIEEASTAARRFWLKPNYFVHHYYFGRMDQREARGIR-MRGVSTLASVGDYGRSRLFMW-------------------------KLGLLDTEGHLLELFLNLVQAPNLIWLRWSNCPTRSLDPWIPIENLRVLHVMGSFLETLWKDESQAPVELRELVIVAPLLKLPESIGLLKKLEVIVLDNQTS--NLESLPNEICQLRSLKHFELTNCSKITSLPYFFGKIINLQHIDLSHSYYLRTLPKSFAELIQLKYLDLSYCYNLTMSSDTLGDINTLESIDISYCPKIKTLPPQVGRQRSLQNLHFLGTHFKELPGAIGKLMDLEFLVIQCPFLEMLPSSLGNLTNLKELMLRHCKALKCLTDSIKLLNRVI---VYDCGFSELSFKRLEGETEVLRRSKDKAILNDFDSSIDRYMPRLPVRIRE----TEKSRPSKGIKILSNLDSSIDRYMPRPPLEI------NREIPAVS-----VPRLQHLLVESCNDLVVVGTLPNTLITLQLKLCHNLRKIEGLGSLTKLQMLDISQCXXXXXXXXXXXXXXLGALDACGCVKLKIIRGFAQLENLRVLDVSGCLELEELQGVEHLGSSLEMFKATKCPKLQ
B8LMZ7______________MHDHLRDLGRSIADQEDSLGRLW-RATDDIHDLWQQSRVIREVRGIRTVRGLSYFYHIREPESDEELSWFKNWCDEVLGNCLRKLIDTTPYRFRKLQLVATEDDHLESILRRVESPNLIWLRWNNCPYSCLPSWIPMKNIRVLEVVGTKLKKLWRAESQAPLELRELNVYAPLSMFPKSIGQMKHIEKIVVTCMPDLIHLKSLPEEFCQLSSLKYLHLL-CPDMKSLPDSFGYLTNLQHLNLSRCRSLQGFPNSFRNLIRLKYLNLEYCSDLTMSEETFANISTLEYLNLSDCKSVQVLPRQLAHQPSLEILSLSETNLKELPGDIGNLSSLEELSLGNSLLEMLPCSLGHLSSLKKLWVCDSPELKSLPDSLGQLTQLSTLWVGGCGIQSL--------------PPEVAKMNNLVELRVRECPLRELLLKNQAEGEEETLADPTGRRESNLDSSVANAQQQCMYRLGYLQLWQTEISHISFGEGVCPNLKQLDIRSCAHLVDVGALPPTLIRLKLYKCRRLSKIEGICNLTKLRKLNIRKCIEVEDLPSLERLTSLEKFSADECSKLKRIKGLGQLAALRILYMSSCKALEELTGVETL-RSLEKLNVVNCRQLQ

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1133			14	14	0.984337
1175	28			14	1.0
1333	75		25		0.996473
1458		25		75	0.996473
1860	20		80		0.995493
1861		80		20	0.995493
1862		80	20		0.995493
1864		80		20	0.995493
1866	20			80	0.995493
1890	40	60			1.0
1894	60	40			1.0
1931		20		80	0.995493
1946		25	75		0.996473
1972	75			25	0.996473
1978		25		75	0.996473
1979		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain