SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9687

Length: 1201 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9687

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-expansin 13, putative n=1 Tax=Ricinus communis RepID=B9SKR9_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Sma3	Expansin	-	-	-

Source	Gene names
Sma3	AT1G69530; At1g26770; At1g69530; At2g28950; At2g37640; At2g39700; At2g40610; At3g03220; At3g55500; At5g02260; At5g05290; At5g56320; CDK3; CDK4; CDK5; CDK6; CDK7; Cs-EXPA1; EXP03; EXP1; EXP10; EXP11; EXP12; EXP13; EXP14; EXP15; EXP16; EXP18; EXP2; EXP3; EX

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	syncytium formation	GO:0006949	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	plant-type cell wall loosening	GO:0009828	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G03220.1	ATEXPA13, EXP13, ATEXP13, ATHEXP ALPHA 1.22, EXPA13 expansin A13 chr3:742655-743975 REVERSE LENGTH=266	59%
RefSeq	Arabidopsis thaliana	NP_566197.1	expansin A13 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002305908.1	hypothetical protein POPTRDRAFT_198725, partial [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRW4

Fln msg:

Fln protein: MQTRRGSWVASLWLLLLNLGWWKQLIIMPTSAAYANDGWKYAFATFYSESDALGTMAGACGFGDLYRHGYGVNTAALSSVLYNGGQACGACFELKCVEDPLYCHPGTSIVVTATNFCPPNYGLPGDDGGWCNPPRQHFVLPVTAFEKIAMWKIGTMNVQYRRVRCAKVGGMRFTINGKDFFLTVLISNVAGDGAVTGVKVKGSKTGWLSMGRNWGQNWHVNADYRGQALSFEVTTIDGKTVTSYNVAPSDWQFGHIYEGKQFG*

Protein Length: 265

Fln nts: ATGGGGGGGCACAGAGGGACCCCGTGTCGGAGCAGCGCACAGGACTTTAGTTCACTGGCATGCTATATCTAACAGTATAGCTGGTAAAGCTGTTGATGTTTTTCTTCTCTTCTCAACTTCCTCTCCATCAGGCCACAACATCAGT_-_ATGCAGACGAGAAGGGGATCATGGGTTGCCTCTCTGTGGCTGCTGCTGCTAAATTTGGGTTGGTGGAAGCAATTAATAATAATGCCTACTTCAGCTGCTTACGCCAACGATGGATGGAAGTACGCCTTCGCGACGTTTTACAGCGAATCTGATGCACTGGGCACCATGGCAGGCGCATGTGGATTTGGAGATTTGTACAGGCATGGCTATGGCGTCAACACGGCGGCACTCAGCAGCGTTCTTTACAATGGAGGTCAGGCATGCGGGGCTTGTTTTGAACTGAAATGTGTGGAGGATCCTCTTTATTGCCATCCGGGAACTTCAATCGTTGTCACAGCCACGAATTTCTGCCCGCCGAACTACGGCCTGCCTGGGGACGATGGCGGGTGGTGCAATCCGCCTCGCCAGCATTTCGTATTGCCTGTCACCGCCTTTGAAAAGATTGCCATGTGGAAAATCGGCACCATGAATGTCCAGTACAGGAGAGTTCGATGTGCGAAAGTAGGGGGTATGAGGTTCACCATAAACGGAAAGGACTTTTTTCTGACAGTTCTGATAAGCAACGTCGCTGGAGACGGAGCCGTTACAGGTGTGAAGGTCAAGGGTTCGAAGACGGGATGGCTGTCGATGGGCAGAAATTGGGGACAGAACTGGCACGTTAATGCCGATTACAGGGGGCAAGCCCTATCGTTCGAGGTTACCACCATTGACGGAAAGACTGTTACTTCTTACAACGTTGCTCCCTCTGACTGGCAGTTCGGCCATATCTACGAGGGGAAACAGTTCGGTTGA___AATGCGTGCTGCGAGATTTATTTTTGGGTGGTTGCGGGTTTCGAACCCCGAATCTATTGATTCATCGGTTCTAAAAGAACCAGAATCAGCTTTGGCAAAATCTGAAAGGAGTTTGTTGTTTTTCAGGATATTTGTAATTATATTTTTTCTAAATTATGATCCTGTAAAGGAGAAAGGTCCGGTCCATATCTGAAATGATGGAGGAGGAGGGTATCTTCGTTATTGTCGTTCGAATTATCTTTTTGGTTTGATGAAGATGAGAAA

Fln Alignment:

Contig9687___GWKYAFATFYSESDALGTMAGACGFGDLYRHGYGVNTAALSSVLYNGGQACGACFELKCVEDPLYCHPGTSIVVTATNFCPPNYGLPGDDGGWCNPPRQHFVLPVTAFEKIAMWKIGTMNVQYRRVRCAKVGGMRFTINGKDFFLTVLISNVAGDGAVTGVKVKGSKTGWLSMGRNWGQNWHVNADYRGQALSFEVTTIDGKTVTSYNVAPSDWQFGHIYEGKQ
B8LRW4______________GWISAHATFYGGSDATGTMGGACGYGNLYSQGYGTNTAALSTALFNNGFSCGACYEIQCNDDPQWCLPG-SIVVTATNFCPPNNALPNDNGGWCNPPLEHFDLSEPVFQHIAKFRAGIVPVQYRRVPCQRKGGIRFTVNGHSYFNLVLITNVGGAGDVEAVSIKGSKTGWQPMSRNWGQNWQSNSCLDGQSLSFKVTTSDGKTVTSYNVAASNWQFGQTFAGEQ

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
234		75		25	0.996473
327	10			90	0.90298
659	16			83	0.994512
1048	83		16		0.994512
1052	16		83		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
184	195	GCT GCT GCT GCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain