SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9653

Length: 2459 nt

UniGene Fasta

>sp_v3.0_unigene9653
GTCCTTGGCGTTTGAGCCCTGGAAGTAAGAAATTTTGGAGCTTTTCAGTCTCTCCAGGATTGGAAACCTGCTGAGCTTTAGCAACAATTCAACAATGGTTGATCAGGAGCAGAACAATCCATCCAATTTTGCTAGTGGGGATGTCACAGACAAGTATGGAAATCCAGCTGATAGGACTAAAACAGGGGGCTGGTTCGCTGCTACCATTATTTTAGGAACTGAACTTTCAGAAAGAATGTGCGTCATAGGGATATCATCCAACCTGGTAACATATTTGGGTGGGGTGTTGCATCTTTCAAACTCGGAGTCTGCGAATATAGTTACTAATTTTATGGGCACCCTGTATCTTCTCAGCCTCTTCGGAGGCTTTCTGGCAGATTCGGTTCTAGGCCGCTTCAAAGCCATTGTAATATTTGGCTCAATTCAGGCCTTGGGTGTGTGTTTGCTAGCCATATCGACATCACTGCCAAGCCTCCAGCCTCCCCCCTGTTCAGGAAACCATGTTGAATATTGTGCCCCTGCAAGCGGTAAAATGATGGCTATGCTTTATGTGTCTCTGTATCTGACTGCTCTCGGCGCAGGAAGTGTGAAGTCCAATGTATCAGGGTTCGGGTCAGACCAGTTCGATGTCGAGGATCCTAAAGAATCTGGGAAGCTGATCTATTTCTTCAATCGATTCTACTTCTGCATCAGTATGGGCTCCTTGTTCGCAGTAACTGTGTTAGTTTACATACAGGATAACGTAGGAAGGGGATTGGGGTATGGAATCCCTTCTGGAAGCATGGCGTTTTGCGTCCTGCTATTCCTGGTATTTTCCAATAAGTATAGATATAGAAGACCTGCTGGAAGCCCTGTTACTCGGATAGCACAAGTGTTTGTTGCAGCTTGGAGAAATAGGAAGCGGAGTTTGCCCTCGGATCCGAGCCTCCTCAACGAGAATGAATACGGGGTTGCCATGGGGCCGGGCAGGGAGAGAATTTCACATACTGACCAGCTTCTGTGCCTGGACAAAGCTGCCATAGTGGATCCCAGCATGAACGACCCTGCAAAGCAGAGCCCATGGAAAATTGCCACTGTAACCAGCATAGAAGAAGTGAAGATGGTAGTCAAATTGTTGCCCATATGGTCTACTTGCATCATGTTCTGGACAGTCTACTCTCAAATACTAACTTTCTCTGTAGAGCAAGCCAATACCATGGATCGGAGGATCGGATCCTTCCAGATCCCATCTGCTTCCCTGCAAGTATTCGTGGTGGGGGGCATCGTTTTCTTCACAACATTCAGCGAGAAGGTACTGGTGCCCACAATGAGGCGTTGGACAGGGCGCCCACAGGGCATCACAAGTCTGCAGAGGATCTCTGTAGGTCTATTTCTGTCCATGATCGCCATGTTGGCAGCTGCTTTAGTAGAGAAGAAGCGCCTGGATGTGGCTCTGCAGCATCAGCTTACCAATAAGGAAAAGGCCATTGTTCCAATCAGTGTATATTGGCTTATTCCCCAGTTTTTGCTAGTGGGTGCAGGGGAGGCTTTTGCCTACGTTGGGCAGCTGGAATTCTTCATAAAACAGGCGCCGGTGAGCATGAAATCGATGAGCACAGGTCTGTTTTTGAGCACTCTTTCACTTGGTTTTTTCTGGAGCACCCTCCTGGTCACTTTAGTTAATGGCCTCACAGGGCATGGCGGTAGTCCAGGGTGGCTCCCGGATAACTTGAACAGAGGAAGGCTGGATTACTTCTACTGGCTTCTCACAGTCCTCAGTTTTCTGAATCTTTTAATATTTTTCATATTTGCTCACTTCTACAAATACACAGAAGAATCAACAGGAGGCCAGAAGGAATCGAAATCTTTTCCCTTGAAGGAGATCGATTCCCGGGGCAGGGCAGAGAAGCCCGGGAATGAAGAACTGGAAATTTACAGTGATGTCTGACGACTGTAAGTTACTTCGCTGTGATAACTGTTCAGAGTGTGGAAGCATGCTCGTATTTTGGGTCGAGGAAGGTCGGAGAAAATCGATGGTGGGCATTTTAGAATTTGATTTCTCGAACGGGGCAGGTTCGCTTTTGAAGATTTGAATGGGTTGATATTGTGATCAGCAACGAGATACCTTTTGGGATTGAGAGTAGACTCGTGAACTTTTATGTACGGCATCATCTTTTTTTTTTTTAAATCTAGGATAATTTGTAACTGGTGAGAGTTACCCTGAACAGATCTAGAGTTACCCTGAACAGACCTAAGATCAAATTTAACTGGCTGCCACTATAAACTTAGGCTAGGTGCAACCGCTTGCAAGTAGCACAATAGCAGGGAACTTATGCCTCAACAAGAACTGAATGTCTTTTTGTGGTCAATGGGAATATTCTTTGTAACCTATAAAATATGAAACAAAGAGATAAATAAAAGCACCTCTTCAGGTCAAAACTGGTCATGATGAAAATATTGTTTTCTTTATTGAAAGAATA

Ace file of the UniGene sp_v3.0_unigene9653

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oligopeptide transporter, putative n=1 Tax=Ricinus communis RepID=B9SH54_RICCO	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Oligopeptide transporter, putative	-	-	4.288e-15	-

Source	Gene names
Sma3	At1g12110; At1g27040; At1g62200; At1g68570; At2g02040; At2g26690; At3g21670; At3g54140; At5g01180; B1026C12.10; B1144D11.1; B1267B06.37-1; B1377B10.10; CHL1; F14H20.11; F19K23.13; F24B22.100; F24J5.19; F7J8_160; GSVIVT00001842001; GSVIVT00001845001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	nitrate transmembrane transporter activity	GO:0015112	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to herbicide	GO:0009635	Biological Process	-
Sma3	response to nitrate	GO:0010167	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	nitrate transport	GO:0015706	Biological Process	-
Sma3	nitrate assimilation	GO:0042128	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G21670.1	Major facilitator superfamily protein chr3:7626942-7628954 REVERSE LENGTH=590	50%
RefSeq	Arabidopsis thaliana	NP_188804.1	major facilitator protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002321148.1	nitrate transporter, H+/oligopeptide symporter POT family, partial [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg:

Fln protein: MVDQEQNNPSNFASGDVTDKYGNPADRTKTGGWFAATIILGTELSERMCVIGISSNLVTYLGGVLHLSNSESANIVTNFMGTLYLLSLFGGFLADSVLGRFKAIVIFGSIQALGVCLLAISTSLPSLQPPPCSGNHVEYCAPASGKMMAMLYVSLYLTALGAGSVKSNVSGFGSDQFDVEDPKESGKLIYFFNRFYFCISMGSLFAVTVLVYIQDNVGRGLGYGIPSGSMAFCVLLFLVFSNKYRYRRPAGSPVTRIAQVFVAAWRNRKRSLPSDPSLLNENEYGVAMGPGRERISHTDQLLCLDKAAIVDPSMNDPAKQSPWKIATVTSIEEVKMVVKLLPIWSTCIMFWTVYSQILTFSVEQANTMDRRIGSFQIPSASLQVFVVGGIVFFTTFSEKVLVPTMRRWTGRPQGITSLQRISVGLFLSMIAMLAAALVEKKRLDVALQHQLTNKEKAIVPISVYWLIPQFLLVGAGEAFAYVGQLEFFIKQAPVSMKSMSTGLFLSTLSLGFFWSTLLVTLVNGLTGHGGSPGWLPDNLNRGRLDYFYWLLTVLSFLNLLIFFIFAHFYKYTEESTGGQKESKSFPLKEIDSRGRAEKPGNEELEIYSDV*

Protein Length: 612

Fln nts: GTCCTTGGCGTTTGAGCCCTGGAAGTAAGAAATTTTGGAGCTTTTCAGTCTCTCCAGGATTGGAAACCTGCTGAGCTTTAGCAACAATTCAACA_-_ATGGTTGATCAGGAGCAGAACAATCCATCCAATTTTGCTAGTGGGGATGTCACAGACAAGTATGGAAATCCAGCTGATAGGACTAAAACAGGGGGCTGGTTCGCTGCTACCATTATTTTAGGAACTGAACTTTCAGAAAGAATGTGCGTCATAGGGATATCATCCAACCTGGTAACATATTTGGGTGGGGTGTTGCATCTTTCAAACTCGGAGTCTGCGAATATAGTTACTAATTTTATGGGCACCCTGTATCTTCTCAGCCTCTTCGGAGGCTTTCTGGCAGATTCGGTTCTAGGCCGCTTCAAAGCCATTGTAATATTTGGCTCAATTCAGGCCTTGGGTGTGTGTTTGCTAGCCATATCGACATCACTGCCAAGCCTCCAGCCTCCCCCCTGTTCAGGAAACCATGTTGAATATTGTGCCCCTGCAAGCGGTAAAATGATGGCTATGCTTTATGTGTCTCTGTATCTGACTGCTCTCGGCGCAGGAAGTGTGAAGTCCAATGTATCAGGGTTCGGGTCAGACCAGTTCGATGTCGAGGATCCTAAAGAATCTGGGAAGCTGATCTATTTCTTCAATCGATTCTACTTCTGCATCAGTATGGGCTCCTTGTTCGCAGTAACTGTGTTAGTTTACATACAGGATAACGTAGGAAGGGGATTGGGGTATGGAATCCCTTCTGGAAGCATGGCGTTTTGCGTCCTGCTATTCCTGGTATTTTCCAATAAGTATAGATATAGAAGACCTGCTGGAAGCCCTGTTACTCGGATAGCACAAGTGTTTGTTGCAGCTTGGAGAAATAGGAAGCGGAGTTTGCCCTCGGATCCGAGCCTCCTCAACGAGAATGAATACGGGGTTGCCATGGGGCCGGGCAGGGAGAGAATTTCACATACTGACCAGCTTCTGTGCCTGGACAAAGCTGCCATAGTGGATCCCAGCATGAACGACCCTGCAAAGCAGAGCCCATGGAAAATTGCCACTGTAACCAGCATAGAAGAAGTGAAGATGGTAGTCAAATTGTTGCCCATATGGTCTACTTGCATCATGTTCTGGACAGTCTACTCTCAAATACTAACTTTCTCTGTAGAGCAAGCCAATACCATGGATCGGAGGATCGGATCCTTCCAGATCCCATCTGCTTCCCTGCAAGTATTCGTGGTGGGGGGCATCGTTTTCTTCACAACATTCAGCGAGAAGGTACTGGTGCCCACAATGAGGCGTTGGACAGGGCGCCCACAGGGCATCACAAGTCTGCAGAGGATCTCTGTAGGTCTATTTCTGTCCATGATCGCCATGTTGGCAGCTGCTTTAGTAGAGAAGAAGCGCCTGGATGTGGCTCTGCAGCATCAGCTTACCAATAAGGAAAAGGCCATTGTTCCAATCAGTGTATATTGGCTTATTCCCCAGTTTTTGCTAGTGGGTGCAGGGGAGGCTTTTGCCTACGTTGGGCAGCTGGAATTCTTCATAAAACAGGCGCCGGTGAGCATGAAATCGATGAGCACAGGTCTGTTTTTGAGCACTCTTTCACTTGGTTTTTTCTGGAGCACCCTCCTGGTCACTTTAGTTAATGGCCTCACAGGGCATGGCGGTAGTCCAGGGTGGCTCCCGGATAACTTGAACAGAGGAAGGCTGGATTACTTCTACTGGCTTCTCACAGTCCTCAGTTTTCTGAATCTTTTAATATTTTTCATATTTGCTCACTTCTACAAATACACAGAAGAATCAACAGGAGGCCAGAAGGAATCGAAATCTTTTCCCTTGAAGGAGATCGATTCCCGGGGCAGGGCAGAGAAGCCCGGGAATGAAGAACTGGAAATTTACAGTGATGTCTGA___CGACTGTAAGTTACTTCGCTGTGATAACTGTTCAGAGTGTGGAAGCATGCTCGTATTTTGGGTCGAGGAAGGTCGGAGAAAATCGATGGTGGGCATTTTAGAATTTGATTTCTCGAACGGGGCAGGTTCGCTTTTGAAGATTTGAATGGGTTGATATTGTGATCAGCAACGAGATACCTTTTGGGATTGAGAGTAGACTCGTGAACTTTTATGTACGGCATCATCTTTTTTTTTTTTAAATCTAGGATAATTTGTAACTGGTGAGAGTTACCCTGAACAGATCTAGAGTTACCCTGAACAGACCTAAGATCAAATTTAACTGGCTGCCACTATAAACTTAGGCTAGGTGCAACCGCTTGCAAGTAGCACAATAGCAGGGAACTTATGCCTCAACAAGAACTGAATGTCTTTTTGTGGTCAATGGGAATATTCTTTGTAACCTATAAAATATGAAACAAAGAGATAAATAAAAGCACCTCTTCAGGTCAAAACTGGTCATGATGAAAATATTGTTTTCTTTATTGAAAGAATA

Fln Alignment:

Contig9653___DKYGNPADRTKTGGWFAATIILGTELSERMCVIGISSNLVTYLGGVLHLSNSESANIVTNFMGTLYLLSLFGGFLADSVLGRFKAIVIFGSIQALGVCLLAISTSLPSLQPPPCSGNHVEYCAPASGKMMAMLYVSLYLTALGAGSVKSNVSGFGSDQFDVEDPKESGKLIYFFNRFYFCISMGSLFAVTVLVYIQDNVGRGLGYGIPSGSMAFCVLLFLVFSNKYRYRRPAGSPVTRIAQVFVAAWRNRKRSLPSDPSLLNENEYGVAMGPGRERISHTDQLLCLDKAAIV-DPSMNDPAKQSPWKIATVTSIEEVKMVVKLLPIWSTCIMFWTVYSQILTFSVEQANTMDRRIGS-FQIPSASLQXXXXXXXXXXXXXSEKVLVPTMRRWTGRPQGITSLQRISVGLFLSMIAMLAAALVEKKRLDVALQHQLTNKEKAIVPISVYWLIPQFLLVGAGEAFAYVGQLEFFIKQAPVSMKSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPGWLPDNLNRGRLDYFYWLLTVXXXXXXXXXXXXAHFYKYTEES
A9NVR2______________DFWGRPSVKENTGNWRACPFILGNECCERLAYYGINTNLVTYLTKRLHQGNAAAAKSVTTWAGTCYLTPLFGAVLADAYWGRYWTIAAFSTIYFIGMATLTLSASVSSLKPPSCIGSD---CPTANLAQYGVFFLGLYLIALGTGGIKPCVSSFGADQFDDTDPKEKKKKGSFFNWFYFSINVGALVSSSVLVWVQDNVGWGWGFGIPTLFMGLAIGSFFSGTPLYRLQKPGGSPVTRMCQVVVASLRKLRKTVPLDHSHLYEVQDRNSAIQGSRKLEHTDEFKCLDKSAIITDDDVRKGGFSNPWRLCTVTQVEEMKILLRMFPIWATGIVFAAVYSQISTMFVEQGMTLDTSIGSRFHIPPASLSVFDVVSVMIWVPVYDRVIVPIVSKYTKRERGFTELQRMGIGLFISILAMVAAALVEIRRLNIVKTYDLVYDKGTPVPMSIFWQIPQYFLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSLIVTIVMFATTKGGNIGWIPDNLNEGHLDYYFWVLASLSVLNLLVYVSCAHRYKYKKAS

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
98		16	83		0.994512
665	14			85	0.993533
667		85	14		0.993533
668			14	85	0.993533
669			14	85	0.993533
710		14	85		0.993533
760	16		83		0.994512
834		20	80		0.995493
867		80		20	0.995493
1114	11		88		0.923564
1115	11			88	0.923564
1117	11		88		0.923564
1119		77	11	11	0.968132
1255			71	14	0.984337
1481	14		85		0.993533
2145	7		92		0.999664
2149	8	79		8	0.998133
2354	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain