SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9652

Length: 191 nt

UniGene Fasta

>sp_v3.0_unigene9652
CAGGGATGCAGTTAGAACAGGCCACGTTAAGTGACTTGCTGATCCCATCTTACAATTCAAGCGAGAATCTTCTGTATGATGTTGATCTGGTGAGGAGAATGTTGGAGCACTTACTGATCCAAGAGAAATATGGCTCCAACCTCACTGAACCCTGCGCCTATAATGCCAATGAAATTATTTGTGATGTGCAA

Ace file of the UniGene sp_v3.0_unigene9652

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	non-phototropic hypocotyl 3 [Arabidopsis thaliana]	-	-	6.0e-09	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Gene names
Sma3	At5g64330; GSVIVT00001901001; JK218; MSJ1.17; NPH3; POPTRDRAFT_577348; POPTRDRAFT_802631; RCOM_0884570; RPT3; VITISV_002200;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	phototropism	GO:0009638	Biological Process	-
Sma3	blue light signaling pathway	GO:0009785	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	BTB/POZ-like	IPR000210	-	0.0	-
Sma3	NPH3	IPR004249	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64330.1	NPH3, RPT3, JK218 Phototropic-responsive NPH3 family protein chr5:25727568-25730225 FORWARD LENGTH=746	9.0e-13	66%
RefSeq	Arabidopsis thaliana	NP_001119489.1	root phototropism protein 3 [Arabidopsis thaliana]	9.0e-13	66%
RefSeq	Populus trichocarpa	XP_002323955.1	predicted protein [Populus trichocarpa]	1.0e-12	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Distance to subject end: 251 aas, your sequence is shorter than subject: 63 - 648

Fln protein: GMQLEQATLSDLLIPSYNSSENLLYDVDLVRRMLEHLLIQEKYGSNLTEPCAYNANEIICDVQ

Protein Length: 64

Fln nts: CAGGGATGCAGTTAGAACAGGCCACGTTAAGTGACTTGCTGATCCCATCTTACAATTCAAGCGAGAATCTTCTGTATGATGTTGATCTGGTGAGGAGAATGTTGGAGCACTTACTGATCCAAGAGAAATATGGCTCCAACCTCACTGAACCCTGCGCCTATAATGCCAATGAAATTATTTGTGATGTGCAA

Fln Alignment:

Contig9652___GMQLEQATLSDLLIPSYNSSENLLYDVDLVRRMLEHLLI-QEKYGSNLTEP
B8LPD8______________GLQLEHATLDDLLIPSYSYTVETLYDIDCVQRILQHFMAGQQGAESTLVNP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain