SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9634

Length: 2421 nt

UniGene Fasta

>sp_v3.0_unigene9634
ATGGGGAAATGAATGGGAATTAAATGCCTGCCTTCGTGCTTTGGCGGATTGGAGTATAGGGTTTCTGCAATAATGGAATACAAGTTCGAATGTTCCAAGCTTGTTGCCTCTTTAATGCTGTCCATTCTTACTCTCAGCAGCACAGCATCCCTGTCTCCCAATGGCATCAACTATGAAGTGGTAGCATTAATGGCAATAAAGAGCCAGCTGAATGATCCAAACAATGTGCTGGAGGCATGGGATATAAACTCAGTGGACCCTTGCAGTTGGAGCATGGTTACTTGTTCTTCTTCAGATGGATCTGTTACTGCAATGGGAATCCCCAGCCAGAGGTTGTCTGGTACTCTCTCACGAGGCATTGGGAACTTGACACATCTTCAGACGTTGCTATTACAGAACAACGATTTGTCAGGTCCGATTCCAGTCGAACTAGGGAAGCTGGAAAACCTTGAAACTCTTGACCTTTCAGGAAATCAATTTAGTGGTTGGATACCAAGTTCCTTGGGTCAGCTGAAGAACTTAAAGTACTTGCGACTCAACAACAACAAGATTTCTGGACCGTTTCCTGGATCACTGGCCAACATTTCAGGGCTGACTTTGTTGGATTTATCCTACAATAATCTTAGTGGCCCTATACCAAGAATTCTTGCCAAATCATACAATATGTCAGGAAATCCTTTTCTCTGCGAGAGGGTGAAGAATTGCCCTGTTGATTCTCACACACCCCTTGTTAATATCAATACAGATACAAATACAGCGCCCTCCAGATGGCATAAGAGGCAGAAGGTGGCTATTGCTCTTGGTGCGAGTTTTGGTTTTCTAGCTGTGTTTATACTTTCCATTGGACTTGTCCTTTGGTGGCGGAAGAAACATAATAGCCTCGTATTCTTTTCTGCTAATGAACAGTTTGATGCTGAAGTATGTCTGGGAAACCTGAGGAGGTTCTCATTTCGAGAGCTCCAAGTGGCCACCAATAATTTTAACGCAAAGAATATTTTAGGTCAAGGAGGGTTTGGAATTGTGTACAAAGGAATCCTTAAAGATGGTACTCTGGTAGCTGTGAAAAGATTGAAAGACACCAGTGCTGCTGGTGGTGAAGTCCAATTTCAAACAGAGGTAGAAATGATCAGCTTGGCTGTGCATAGGAACTTGTTACGGTTATATGGATTTTGCATGACTTGCACAGAGAGACTACTGGTGTATCCATACATGCCAAATGGAAGTGTGGCCTATCGTCTAAGAGATAATATTGGGGGGAAACCAGCTCTGGATTGGTATACTCGCAAACGGATAGCACTTGGAGCAGCAAGGGGACTTTTATATTTGCATGACCAATGTGATCCTAGGATAATTCACCGTGATGTCAAAGCAGCAAACATATTACTGGATGAAGATTTTGAAGCCATTGTGGGAGACTTTGGATTGGCAAAGCTTTTAGATCAGAGGGATTCACATGTCACTACTGCTGTTCGTGGTACTGTAGGGCACATAGCCCCAGAATACCTTTCAACAGGACAGTCATCAGAGAAAACTGATGTATTTGGCTTTGGCATACTGCTGTTGGAACTCATAACTGGACAGAGGGCTCTGGACTTCGGCAATGATTCCAAACAGAAAGGGGTAATGCTTGATTGGGTTAAAAAGGTATATCAAGAGAAGAAATTGGACCTTATTGTAGATAAAGATCTTAAAGGTTTCTTTGATAGGGTTGAACTCGAGGAGATGGTGCAAGTGGCCTTATTATGCACCCAGTTTCATCCGGCACATCGTCCTAAGATGTCTGAAGTGGTGAGAATGTTAGAAGGAGATGGGCTAGCAGAACGATGGGAGGCATCACAGAAAACTGAAACTCCTAGCTACAGAAGGGCTGAATCAATACCCAGGAAGTATTCCGATTTCATTGAAGACACTTCTTTCGCTGTACAACCCATGGAACTTTCTGGACCACGATGATTCCACTGTCTTTATGGTGGCATTAAATATCCACTGCTGGCCACTATAGTCAGAACGAGACGCGTTATCGAGTTTGCCAGAGGCAATGGAGCAGCATTTTGCATATGAATGATTAAATTGCGGCTAGTTTCTAGTGTAATATTATTGGTCAGAAGTGATGAGCATGGCCATTGTATTGTTATTGTAAAGTAATGTTGTATATTTGATATAATATTTTGGCAGTGCAATCTTTCGGCATTGTGTATCTCCACTGTTTCCTCAATGATAGAACTTTAATTTCCACCATAACTAATGGTTTGACATGAACCCAAATCCATTTGAAAGGATTGGGAAGGCAATGCGGAAAATGATTTAGATTCTGTTAATGCTGAATGCATGAGAGTTAACTCGGAGAATGCAAAACACAGTATGGAGCTCAAACAAAGCACAAGTCCCGAGTGTAGTTCTTAAAACCAAGAATTTGTTCTC

Ace file of the UniGene sp_v3.0_unigene9634

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat receptor-like kinase [Ipomoea batatas]	-	-	0.0	64%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Araucaria angustifolia.	-	-	0.0	55%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	1.284e-19	-

Source	Gene names
Sma3	AT1G34210; AT1G60800; AT2G13790; AT2G13800; AT2G23950; AT4G30520; AT4g30520; AT5G10290; AT5G16000; AT5G45780; AT5G63710; AT5G65240; At1g34210; At1g60800; At2g13780; At2g13790; At2g13800; At2g23950; At3g25560; At4g30520; At4g33430; At5g10290; At5g16000; At

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	endosome membrane	GO:0010008	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Adenovirus E3 region protein CR2	IPR003470	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G60800.1	NIK3 NSP-interacting kinase 3 chr1:22383601-22386931 REVERSE LENGTH=632	64%
RefSeq	Arabidopsis thaliana	NP_176279.1	NSP-interacting kinase 3 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002312685.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D1MEH6

Fln msg:

Fln protein: MGIKCLPSCFGGLEYRVSAIMEYKFECSKLVASLMLSILTLSSTASLSPNGINYEVVALMAIKSQLNDPNNVLEAWDINSVDPCSWSMVTCSSSDGSVTAMGIPSQRLSGTLSRGIGNLTHLQTLLLQNNDLSGPIPVELGKLENLETLDLSGNQFSGWIPSSLGQLKNLKYLRLNNNKISGPFPGSLANISGLTLLDLSYNNLSGPIPRILAKSYNMSGNPFLCERVKNCPVDSHTPLVNINTDTNTAPSRWHKRQKVAIALGASFGFLAVFILSIGLVLWWRKKHNSLVFFSANEQFDAEVCLGNLRRFSFRELQVATNNFNAKNILGQGGFGIVYKGILKDGTLVAVKRLKDTSAAGGEVQFQTEVEMISLAVHRNLLRLYGFCMTCTERLLVYPYMPNGSVAYRLRDNIGGKPALDWYTRKRIALGAARGLLYLHDQCDPRIIHRDVKAANILLDEDFEAIVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALDFGNDSKQKGVMLDWVKKVYQEKKLDLIVDKDLKGFFDRVELEEMVQVALLCTQFHPAHRPKMSEVVRMLEGDGLAERWEASQKTETPSYRRAESIPRKYSDFIEDTSFAVQPMELSGPR*

Protein Length: 648

Fln nts: ATGGGGAAATGA_-_ATGGGAATTAAATGCCTGCCTTCGTGCTTTGGCGGATTGGAGTATAGGGTTTCTGCAATAATGGAATACAAGTTCGAATGTTCCAAGCTTGTTGCCTCTTTAATGCTGTCCATTCTTACTCTCAGCAGCACAGCATCCCTGTCTCCCAATGGCATCAACTATGAAGTGGTAGCATTAATGGCAATAAAGAGCCAGCTGAATGATCCAAACAATGTGCTGGAGGCATGGGATATAAACTCAGTGGACCCTTGCAGTTGGAGCATGGTTACTTGTTCTTCTTCAGATGGATCTGTTACTGCAATGGGAATCCCCAGCCAGAGGTTGTCTGGTACTCTCTCACGAGGCATTGGGAACTTGACACATCTTCAGACGTTGCTATTACAGAACAACGATTTGTCAGGTCCGATTCCAGTCGAACTAGGGAAGCTGGAAAACCTTGAAACTCTTGACCTTTCAGGAAATCAATTTAGTGGTTGGATACCAAGTTCCTTGGGTCAGCTGAAGAACTTAAAGTACTTGCGACTCAACAACAACAAGATTTCTGGACCGTTTCCTGGATCACTGGCCAACATTTCAGGGCTGACTTTGTTGGATTTATCCTACAATAATCTTAGTGGCCCTATACCAAGAATTCTTGCCAAATCATACAATATGTCAGGAAATCCTTTTCTCTGCGAGAGGGTGAAGAATTGCCCTGTTGATTCTCACACACCCCTTGTTAATATCAATACAGATACAAATACAGCGCCCTCCAGATGGCATAAGAGGCAGAAGGTGGCTATTGCTCTTGGTGCGAGTTTTGGTTTTCTAGCTGTGTTTATACTTTCCATTGGACTTGTCCTTTGGTGGCGGAAGAAACATAATAGCCTCGTATTCTTTTCTGCTAATGAACAGTTTGATGCTGAAGTATGTCTGGGAAACCTGAGGAGGTTCTCATTTCGAGAGCTCCAAGTGGCCACCAATAATTTTAACGCAAAGAATATTTTAGGTCAAGGAGGGTTTGGAATTGTGTACAAAGGAATCCTTAAAGATGGTACTCTGGTAGCTGTGAAAAGATTGAAAGACACCAGTGCTGCTGGTGGTGAAGTCCAATTTCAAACAGAGGTAGAAATGATCAGCTTGGCTGTGCATAGGAACTTGTTACGGTTATATGGATTTTGCATGACTTGCACAGAGAGACTACTGGTGTATCCATACATGCCAAATGGAAGTGTGGCCTATCGTCTAAGAGATAATATTGGGGGGAAACCAGCTCTGGATTGGTATACTCGCAAACGGATAGCACTTGGAGCAGCAAGGGGACTTTTATATTTGCATGACCAATGTGATCCTAGGATAATTCACCGTGATGTCAAAGCAGCAAACATATTACTGGATGAAGATTTTGAAGCCATTGTGGGAGACTTTGGATTGGCAAAGCTTTTAGATCAGAGGGATTCACATGTCACTACTGCTGTTCGTGGTACTGTAGGGCACATAGCCCCAGAATACCTTTCAACAGGACAGTCATCAGAGAAAACTGATGTATTTGGCTTTGGCATACTGCTGTTGGAACTCATAACTGGACAGAGGGCTCTGGACTTCGGCAATGATTCCAAACAGAAAGGGGTAATGCTTGATTGGGTTAAAAAGGTATATCAAGAGAAGAAATTGGACCTTATTGTAGATAAAGATCTTAAAGGTTTCTTTGATAGGGTTGAACTCGAGGAGATGGTGCAAGTGGCCTTATTATGCACCCAGTTTCATCCGGCACATCGTCCTAAGATGTCTGAAGTGGTGAGAATGTTAGAAGGAGATGGGCTAGCAGAACGATGGGAGGCATCACAGAAAACTGAAACTCCTAGCTACAGAAGGGCTGAATCAATACCCAGGAAGTATTCCGATTTCATTGAAGACACTTCTTTCGCTGTACAACCCATGGAACTTTCTGGACCACGATGA___TTCCACTGTCTTTATGGTGGCATTAAATATCCACTGCTGGCCACTATAGTCAGAACGAGACGCGTTATCGAGTTTGCCAGAGGCAATGGAGCAGCATTTTGCATATGAATGATTAAATTGCGGCTAGTTTCTAGTGTAATATTATTGGTCAGAAGTGATGAGCATGGCCATTGTATTGTTATTGTAAAGTAATGTTGTATATTTGATATAATATTTTGGCAGTGCAATCTTTCGGCATTGTGTATCTCCACTGTTTCCTCAATGATAGAACTTTAATTTCCACCATAACTAATGGTTTGACATGAACCCAAATCCATTTGAAAGGATTGGGAAGGCAATGCGGAAAATGATTTAGATTCTGTTAATGCTGAATGCATGAGAGTTAACTCGGAGAATGCAAAACACAGTATGGAGCTCAAACAAAGCACAAGTCCCGAGTGTAGTTCTTAAAACCAAGAATTTGTTCTC

Fln Alignment:

Contig9634___NYEVVALMAIKSQLNDPNNVLEAWDINSVDPCSWSMVTCSSSDGSVTAMGIPSQRLSGTLSRGIGXXXXXXXXXXXXXXXSGPIPVELGKLENLETLDLSGNQFSGWIPSSLGQXXXXXXXXXXXXXISGPFPGSLANISGLTLLDLSYNNLSGPIPR----ILAKSYNMSGNPFLCERVKNCPVDSHTPLVNINTDTNTAPSRWHKRQKV-------AIALGASFGFLAVFILSIGLVLWWRKKHNSLVFFSANEQFDAEVCLGNLRRFSFRELQVATNNFNAKNILGQGGFGIVYKGILKDGTLVAVKRLKDTSAAGGEVQFQTEVEMISLAVHRNLLRLYGFCMTCTERLLVYPYMPNGSVAYRLRDNIGGKPALDWYTRKRIALGAARGLLYLHDQCDPRIIHRDVKAANILLDEDFEAIVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALDFGNDSKQKGVM-LDWVKKVYQEXXXXXXXXXXXXGFFDRVELEEMVQVALLCTQFHPAHRPKMSEVVRMLEGDGLAERWEASQKTETPSYRRAESIPRKYSDFIEDTSFAVQPMELSGPR
D1MEH6______________NTEGDALHSLRQNLIDTNNVLQSWDPTLVNPCTWFHVTCNN-DNSVIRVDFGNAALSGALVPQLGQLKKLQYLEFYSNNISGTIPKELGNLTNLVSLDLYFNNFTGPIPDSLGQLSKLRFLRLNNNSLTGPIPKSLTTITALQVLDLSNNNLTGEVPANGSFSLFTPISFGGNQYLCGPVAQKPCPGSPPFSPPPPFVPPPPVAGSNGARVQSSSSTGAIAGGVAAGAALLFAAPAIGFAWWRRRKPQEHFFDVPAEEDPEVHLGQLKRFSLRELQVATDGFSNRNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAQNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRSQEVELVPHRNSEWIVDSTDNLHAVELSGPR

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1162	90	10			0.90298
1163	10	90			0.90298
1182		12		87	0.992554
1183	12			87	0.992554
1218	16	83			0.994512
1222	83			16	0.994512
1243		80		20	0.995493
1663	75		25		0.996473
1664			25	75	0.996473
1665		75	25		0.996473
1710	20			80	0.995493
1712		75	25		0.996473
1713			25	75	0.996473
1714			25	75	0.996473
1964	90		10		0.90298
2212			12	87	0.992554
2214			14	85	0.993533
2216		83		16	0.994512
2217	83			16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
537	548	CAA CAA CAA CAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain