SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9610

Length: 1798 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9610

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative Ubiquitin activating enzyme [Oryza sativa Japonica Group] dbj\|BAG88369.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	0.0	68%
FL-Next	sp=Ubiquitin-like modifier-activating enzyme 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Sma3	Putative Ubiquitin activating enzyme	-	-	5.331e-09	-

Source	Gene names
Sma3	At1g05350; CHLREDRAFT_113805; GSVIVT00017943001; MICPUCDRAFT_44393; Os02g0506500; OsJ_06853; P0047E05.15-1; P0047E05.15-2; P0047E05.15-3; PHYPADRAFT_111718; POPTRDRAFT_570256; POPTRDRAFT_733616; RCOM_1506190; YUP8H12.3;

Source	GOs	Term	Type	Identity
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	UBA/THIF-type NAD/FAD binding fold	IPR000594	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G05350.1	NAD(P)-binding Rossmann-fold superfamily protein chr1:1560891-1564005 REVERSE LENGTH=431	68%
RefSeq	Arabidopsis thaliana	NP_172027.2	ubiquitin-like modifier-activating enzyme 5 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002321704.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O23034

Fln msg:

Fln protein: MEEVKELLDTLEGLKSALSLSPLDNKIQSQLTKLQHHAERISTSVKGVAMRRPKVKDMSSEVVDSNPYSRLMALKRMGIVNNYERIREFSVSIVGIGGVGSVAAEMLARCGIGRLLLYDYDTVELANMNRLFFRPEQVGMTKTDAAAQTLAEINPDVLIESYTLNITTVKGFEKFMETLTNQVIESTRGRQSGVDLVLSCVDNYEARMVVNQACNELNQIWMESGVSEDAVSGHIQLLIPGETACFACAPPLVVASGVDERTLKRDGVCAASLPTTMGVVAGLLVQSTLKYLLQFGEVSKYLGYNALKDYFPTMEMLPNPQCSNSACQDRQREYIRLKPAKDAAAKARVEAEAEAACASNLPVHDDNEWNISVVDDEKSEATIRSTPSDELPDGLVREFPEANVLEKPALSEESIVVHPICDLDNLRKQLEALNAD*

Protein Length: 438

Fln nts: ATGGAGAGGGAGTAATTGTAGCTCTGCGATGAATATAACCTTCACATACCAGACCATACAGGGAGTAGTACTTTTCCCTGTGGTATGAGTGATTTTTTCCCCGTTGTTAGGTTGCATAGCGCTAGTTAACACGTACTCGGGATCATCAGACGAAACAGCAGCATTAGCATTAACCGGC_-_ATGGAGGAAGTGAAGGAGCTACTGGATACTTTGGAAGGCCTTAAATCAGCGTTATCATTGTCACCATTAGATAACAAAATTCAATCTCAGCTTACCAAGTTGCAACATCATGCAGAGCGGATTTCCACGAGTGTAAAAGGTGTGGCTATGCGACGCCCAAAAGTGAAGGATATGAGCTCTGAAGTAGTGGACAGTAATCCATACAGTAGACTTATGGCATTGAAGCGAATGGGTATTGTGAACAACTATGAGCGGATTCGAGAATTCTCAGTTTCCATTGTTGGTATTGGTGGTGTAGGAAGTGTTGCAGCTGAAATGCTTGCAAGATGTGGAATTGGGCGCCTTTTGCTGTATGACTATGACACAGTGGAATTGGCAAATATGAATCGTCTCTTCTTCCGGCCAGAGCAGGTTGGCATGACTAAGACAGATGCTGCTGCTCAGACACTTGCTGAAATTAATCCGGATGTTTTGATTGAGAGCTACACATTGAATATTACAACAGTGAAGGGTTTTGAGAAATTCATGGAGACTCTGACCAACCAAGTTATTGAATCCACAAGAGGTCGACAAAGTGGAGTTGATTTGGTGTTAAGCTGTGTAGATAACTATGAAGCTCGCATGGTTGTGAATCAGGCTTGCAACGAGCTAAACCAAATATGGATGGAGTCAGGTGTGTCAGAGGATGCTGTATCTGGGCATATTCAATTGCTCATTCCGGGAGAAACAGCTTGTTTTGCATGTGCTCCACCACTGGTAGTTGCATCTGGAGTAGATGAGCGTACTCTCAAGCGTGATGGTGTTTGTGCAGCTTCATTACCCACCACAATGGGAGTTGTGGCTGGTCTTTTGGTTCAAAGTACTCTCAAGTACTTGCTTCAATTTGGTGAAGTTTCCAAATACTTGGGATACAATGCTCTCAAGGACTATTTCCCAACCATGGAGATGTTACCTAATCCTCAGTGTTCTAATTCCGCTTGTCAAGACCGTCAGCGAGAATATATCCGGTTGAAGCCAGCAAAGGATGCTGCAGCTAAGGCTAGGGTAGAAGCAGAAGCAGAAGCAGCCTGTGCATCTAATCTTCCAGTTCACGATGATAATGAGTGGAATATAAGTGTCGTTGATGATGAAAAATCAGAGGCTACAATTCGAAGTACCCCTTCAGATGAGCTTCCAGACGGGCTTGTGCGTGAGTTTCCTGAGGCAAATGTGCTCGAGAAGCCTGCTTTATCAGAGGAATCAATAGTTGTGCACCCAATTTGTGACCTTGATAATCTTCGGAAGCAGTTAGAGGCTCTTAATGCGGATTAA___TGTCTGTTATAACGATGGTTGAATAAGCTAGTATTCGATTGCTTGTACATGGGATTCATTTTTCATATTTGTTGGTATCAACTGAAAACAGTTCAAAGCTTGATATTGTAATCATCAAGCAAAATGCTTGATTGTAACAAGGATACAAGAAAAATCGGACTTCTATTTTAAAAAAAAAATGTCAGCACATTTTATATTCTCGCATCATAATTAACATAAATCATCATTAAGTACATTTATTTCGAGAGATGTGTGATTTTCATTTGCGTATAGAGCATCTTCCATTGCTAAGAGCAACTCAATTATGTT

Fln Alignment:

Contig9610___KELLDTLEGLKSALSLSPLDNKIQSQLTKLQHHAERISTSVKGVAMRRPKVKDMSSEVVDSNPYSRLMALKRMGIVNNYERIREFXXXXXXXXXXXXXAAEMLARCGIGRLLLYDYDTVELANMNRLFFRPEQVGMTKTDAAAQTLAEINPDVLIESYTLNITTVKGFEKFMETLTNQVIESTRGRQSGVDLVLSCVDNYEARMVVNQACNELNQIWMESGVSEDAVSGHIQLLIPGETACFACAPPLVVASGVDERTLKRDGVCAASLPTTMGVVAGLLVQSTLKYLLQFGEVSKYLGYNALKDYFPTMEMLPNPQCSNSACQDRQREYIRLXXXXXXXXXXXXXXXXXXXXXSNLPVHDDNEWNISVVDDEKSEATIR-STPSDELPDGLVREFPEANVLEKP-ALSEESIVVHPICDLDNLRKQLEALNA
O23034______________KALLDDLDVLEKSLSDPALINKLRS-------HVENLATLSKCNPHRRSKVKELSSEVVDSNPYSRLMALQRMGIVDNYERIREFSVAIVGIGGVGSVAAEMLTRCGIGRLLLYDYDTVELANMNRLFFRPDQVGMTKTDAAVQTLAEINPDVVLESFTMNITTVQGFETFTSSLTNKSFCPSKEGGSGVDLVLSCVDNYEARMAVNQACNELRQTWMESGVSEDAVSGHIQLLVPGETACFACAPPLVVASGIDERTLKREGVCAASLPTTMGVVAGLLVQNSLKFLLNFGEVSPYLGYNSLKDFFPTMKMRPNPQCSNVACLERQKEYM-LAKPERDAAAKAKMEADASTTIDEGPLHDDNEWNISVVDDENEKDTTKAASSSDTLPEGLTRELPVADEYEKAIAIASGSGETEEEDDLEDLKKQLEALNA

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
471	11		88		0.923564
491		11		88	0.923564
1156	25	75			0.996473
1273	87		12		0.999964
1325	83			16	1.0
1435	8	91			0.999766

SSRs (tot: 1)

Start position	End position	Sequence	Length
1225	1244	AGAAGC AGAAGC AGAAGC AG	20

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain