SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9594

Length: 1335 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene9594 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit emb\|CAA63194.1\| ribonucleotide reductase R2 [Nicotiana tabacum]	-	-	0.0	81%
FL-Next	sp=Ribonucleoside-diphosphate reductase small chain; Nicotiana tabacum (Common tobacco).	-	-	0.0	68%
Sma3	Ribonucleoside-diphosphate reductase small chain	-	-	1.082e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribonucleoside-diphosphate reductase.	EC:1.17.4.1	-	6.817e-18	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	6.817e-18	%
Sma3	Pyrimidine metabolism	00240	6.817e-18	%
Sma3	Glutathione metabolism	00480	6.817e-18	%
Sma3	Metabolic pathways	01100	6.817e-18	%

Source	Gene names
Sma3	At3g23580; At3g27060; At5g40942; CHLREDRAFT_144621; CHLREDRAFT_188785; GSVIVT00004599001; GSVIVT00004600001; GSVIVT00019890001; GSVIVT00023944001; GSVIVT00037857001; MDB19.6; MICPUCDRAFT_33344; MICPUCDRAFT_45157; MICPUN_91276; MICPUN_94589; MMG1.4; MOJ10.

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	GO:0004748	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	transition metal ion binding	GO:0046914	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	deoxyribonucleoside diphosphate metabolic process	GO:0009186	Biological Process	-
Sma3	ribonucleotide metabolic process	GO:0009259	Biological Process	-
Sma3	programmed cell death	GO:0012501	Biological Process	-
Sma3	regulation of cell cycle	GO:0051726	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonucleotide reductase	IPR000358	-	0.0	-
Sma3	Ribonucleotide reductase-related	IPR012348	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G27060.1	TSO2, ATTSO2 Ferritin/ribonucleotide reductase-like family protein chr3:9979971-9981057 REVERSE LENGTH=332	82%
RefSeq	Arabidopsis thaliana	NP_189342.1	Ribonucleoside-diphosphate reductase small chain C [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002311826.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P49730

Fln msg: Overlapping hits, possible frame ERROR between 293 and 287, and overlapping frame ERROR between 706 and 682,

Fln protein: MAVVGEEPLLVENPQRFCMFPITYPEIWEMYKKAExxxxTAEEVDLAQDLPHWEGLSADEKHFITRVLAFFAASDGIVLENLACRFMKEVQVPEARAFYGFQIAIENVHSEMYSLLLETYIKDSKEKDHLFRAIETVPCVVKKADWTLRWIDSSGSFAERIVAFACxxxxxxxxxxxSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSMLNHKLSEERVKEIVCDSVDIEREFVSDALPCDLVGMNAQLMIQYVEFVADRLLVALGYSKVYDAQNPFDWMELISLQGKTNFFEKRVGEYQKASVMSGLGNMEGNHVFKLDEDF*

Protein Length: 331

Fln nts: CGTCGTGACCTTGGCTGTCAATGGGGGTACTAAATCAGTCCAAGTTATCTTAATTTCAGCAGGTTTATCTTAAGTCATCAGCATTTCAGTAGGTTCATTATCCATTCTTGAGGTCTCAGCCCTGTTTTCGCATCTAGGCACTTGTATATATCTCTATTCTTGTTAAAACAAGACCAGCA_-_ATGGCGGTTGTTGGCGAGGAGCCTCTTTTGGTAGAGAATCCGCAGAGGTTTTGTATGTTTCCAATTACGTATCCTGAGATATGGGAAATGTATAAGAAAGCAGAGxxxxxxxxxxxxACTGCCGAGGAAGTTGACCTGGCACAAGATCTTCCTCACTGGGAAGGGCTGAGCGCCGATGAAAAGCACTTCATCACGCGTGTTTTGGCTTTTTTTGCTGCCTCTGATGGCATTGTTCTGGAGAATTTGGCTTGCCGTTTCATGAAAGAAGTTCAAGTCCCTGAGGCACGTGCATTTTATGGGTTCCAGATTGCAATAGAAAATGTTCATTCAGAAATGTACAGTCTCCTGTTAGAGACTTACATCAAGGACTCCAAAGAGAAGGATCACCTGTTTCGTGCAATTGAAACTGTTCCCTGTGTAGTTAAGAAAGCAGACTGGACTCTTCGTTGGATTGACAGCTCTGGAAGTTTTGCTGAAAGGATTGTTGCATTTGCTTGTGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCGATCTTCTGGCTGAAGAAGAGAGGTCTAATGCCAGGGCTAACTTTTTCGAATGAGCTCATTTCAAGGGATGAAGGCCTTCACTGTGACTTTGCATGCTTGCTCTACAGCATGCTAAATCATAAGCTTAGTGAAGAAAGAGTGAAGGAGATAGTATGTGATTCGGTTGATATTGAGCGAGAGTTCGTTTCTGATGCTCTCCCTTGTGATCTTGTTGGGATGAATGCTCAGCTAATGATTCAATATGTTGAATTTGTCGCTGATAGATTGTTGGTTGCATTGGGATACAGCAAAGTGTATGATGCACAGAATCCATTCGATTGGATGGAGCTGATCTCTCTTCAAGGGAAAACAAATTTCTTTGAAAAAAGAGTTGGAGAGTACCAAAAGGCCTCTGTTATGTCTGGTTTGGGCAACATGGAGGGAAACCATGTATTTAAATTGGACGAGGACTTTTGA___CAATGTGTATTAATTATTTTGCTTGGTCTATTCTTTGAGATCAAGGATGGCCCTTTGTGCTTGTATATAGGTTTTCATTGTGAATGAGTTTTTATAGGACCTTTGTGCTTGTACGGAGGTTTTCATTCTGAATGAGTTTTTATAATATTTTGTAGGTTTCAAAATACG

Fln Alignment:

Contig9594___MAVVGEEPLLVENPQRFCMFPITYPEIWEMYKKAEAxxWTAEEVDLAQDLPHWEGLSADEKHFITRVLAFFAASDGIVLENLACRFMKEVQVPEARAFYGFQIAIENVHSEMYSLLLETYIKDSKEKDHLFRAIETVPCVVKKADWTLRWIDSSGSFAERIVAFACVExxxxxxxxCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSMLNHKLSEERVKEIVCDSVDIEREFVSDALPCDLVGMNAQLMIQYVEFVADRLLVALGYSKVYDAQNPFDWMELISLQGKTNFFEKRVGEYQKASVMSGLGNMEGNHVFKLDEDF
P49730______________MPLIPEEPLLASSPDRFCMFPIQYPQIWEMYKKALAxxWTAEEVDLSSDTRHWETLTPGERHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIKDSDEKSRLFRAVETNPCVEKKAKWALRWIDGSETFAERLVAFACVExxxxxxxxCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLTEERVKGIVADAVEIEREFVCDALPCALVGMNGDLMSKYIEFVADRLLDALGYDKLYNAQNPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGATHEFKLDEDF

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1259			11	88	0.923564
1264	88		11		0.923564
1268	88		11		0.923564
1294	88	11			0.923564
1311	87	12			0.992554
1313		60	40		1.0
1314		40	20	40	1.0
1315	25	50		25	0.995533
1316		50	50		1.0
1318			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain