SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9573

Length: 1343 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9573

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	KOM, putative n=1 Tax=Ricinus communis RepID=B9SZJ8_RICCO	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Sma3	Rhomboid-like protein	-	-	1.592e-08	-

Source	Gene names
Sma3	F4F7.32; GSVIVT00026556001; MICPUCDRAFT_56522; MICPUN_50268; OSTLU_31680; Os09g0454100; OsI_31626; OsJ_29608; Ot05g02230; P0488D02.36; PHYPADRAFT_171507; POPTRDRAFT_817004; RCOM_0065580; VITISV_008789;

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Inosine/uridine-preferring nucleoside hydrolase domain	IPR001910	-	-
Sma3	Peptidase S54, rhomboid	IPR002610	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G25290.1	ATRBL10, RBL10 RHOMBOID-like protein 10 chr1:8867157-8868945 FORWARD LENGTH=343	55%
RefSeq	Arabidopsis thaliana	NP_001185093.1	RHOMBOID-like protein 10 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002304070.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 16 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 234 - 383

Fln protein: QKSAKNWNDIGGSLQSSGEHRSSGRACTNILLGLIILTYVGQLVSKGRVTVWGAKVNSLIKEGQIWRLVTSSFLHADVVHLLVNCYSLNSVGPAVEKLSGPKRFFAVYTASAVAGSTISYYLCKAPAVGASGAIFGLVGSFAVFVLRHRKLMKGGQQSLFQISRVIAINMVLGLMSRGIDNWGHIGGLIGGASLSWLLGPALSFESTQVGRKAFLVDKPPIAYILSWGRSHLQ*

Protein Length: 235

Fln nts: ATGGGGAGGCAGAGGCAGGCACTGGATGGGATTTATACAGGATAAGAACAAATATAGCAGAGAGAGTGAGCATGCCTACGTTAACTCATTGTCCTTGGGGATGGGCGTGCGGGTTAAATTGGAGTTGGCGTTCCAGATGCCGACGTGTACGTGGGCGTGGCTTCTTGACCGTGGCGTGTGGTCTGGGATTGCGCGCAGCTCGACTCGACGTAAAGCTTTTAAGTGTTCTTCTTCCTACAGCAGCAGAAATCCAGGAATCCTGCAATCTTGAACATGACATCAGTAACATTCATCATTGGAACAAGGGTTACCATGACTTGTACAAGGAGCTTGACTTTGTGGACAAGCTGCGAACAATTTTCCTAGCTGGTCGTTTATTTTGGTTATCAATTCCATTCTGGAAAGAGA_-_ATGACAAAAGTCTGCAAAAAACTGGAATGATATAGGTGGTTCATTACAGTCATCTGGTGAACATCGTTCAAGTGGAAGAGCTTGTACGAACATCCTTCTTGGTTTAATTATCCTGACATATGTTGGTCAGCTTGTATCTAAGGGAAGAGTCACTGTATGGGGAGCTAAGGTTAACAGCCTGATCAAAGAAGGCCAGATATGGAGACTTGTAACTTCTTCATTTCTTCATGCAGATGTCGTGCATCTCTTGGTCAATTGTTATTCTCTGAATTCAGTTGGTCCAGCTGTGGAGAAACTAAGTGGACCCAAGAGATTTTTTGCAGTTTACACAGCTTCTGCAGTTGCGGGTTCGACTATCAGTTACTATCTCTGCAAAGCACCTGCAGTAGGCGCTTCTGGAGCCATTTTTGGTCTTGTAGGTTCTTTCGCTGTATTTGTATTGAGGCACAGGAAGCTCATGAAGGGTGGACAACAAAGTTTGTTTCAAATTTCTCGCGTCATTGCCATCAACATGGTTTTAGGATTGATGTCTCGAGGAATTGACAATTGGGGTCATATTGGGGGATTGATTGGTGGAGCTTCATTGTCATGGTTGTTGGGCCCCGCACTCTCATTTGAATCCACTCAAGTGGGAAGAAAGGCATTCTTGGTAGACAAGCCACCAATTGCTTACATTCTTAGTTGGGGAAGAAGCCACCTACAATAATTTTAGATTTAGTTTTGCACTATTATTTCCATCCATGCTTATGATATGTAACAACTTTAAACTTGAATTTGAGTAGTGAAATTCAGTTTGTACAATTTGTATTCTCTATTTTATCATACTAGCGTTTGAAGAGATTTCATCTTATTGCTACAAATATAACTTATCTATGACTTTATAGATTATAAGGAGAGTATTTATGTAATGTGGGCAATATATCCTATTTTACATT

Fln Alignment:

Contig9573___LIKEGQIWRLVTSSFLHADVVHLLVNCYSLNSVGPAVEKLSGPKRFFAVYTASAVAGSTIS-YYLCKAPAVGASGAIFGLVGSFAVFVLRHRKLMKGGQQSLFQISRVIAINMVLGLMSRGIDNWGHIGGLIGGASLSWL
B8LKV6______________VVKEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQEFGFARIGTVYLVSAFGGSVLSALFNQNGVSVGASGALFGLLGAMLSELITNWTIYASKFAALVTLVFIIVVNLAFGLLPH-VDNFAHIGGFISGFLLGFV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
696		33		66	0.997452
736		14		85	0.993533
739	85			14	0.993533
1005			50	50	1.0
1054			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain