SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9535

Length: 954 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9535

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	major facilitator protein [Arabidopsis thaliana] gb\|AED94780.1\| major facilitator protein [Arabidopsis thaliana]	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	55%
Sma3	Putative tetracycline transporter protein	-	-	9.308e-13	-

Source	Gene names
Sma3	At2g16980; At2g16990; At5g42210; GSVIVT00001631001; GSVIVT00015514001; GSVIVT00036173001; OJ1486_E07.30-1; OJ1725_H08.7-1; Os02g0667500; OsI_08398; OsJ_07859; POPTRDRAFT_1086398; POPTRDRAFT_196207; POPTRDRAFT_715555; POPTRDRAFT_815988; POPTRDRAFT_822713;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	tetracycline:hydrogen antiporter activity	GO:0015520	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	tetracycline transport	GO:0015904	Biological Process	-
Sma3	response to antibiotic	GO:0046677	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tetracycline resistance protein, TetA/multidrug resistance protein MdtG	IPR001958	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G42210.1	Major facilitator superfamily protein chr5:16867865-16870568 FORWARD LENGTH=282	54%
RefSeq	Arabidopsis thaliana	NP_199036.2	major facilitator protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002306959.1	predicted protein, partial [Populus trichocarpa]	56%

Full-Lengther Next Prediction

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
249		20		80	0.995493
251		80		20	0.995493
257	20	80			0.995493
258		20	80		0.995493
259		20	80		0.995493
263		80	20		0.995493
264	80		20		0.995493
266	80			20	0.995493
269		20		80	0.995493
270	20		80		0.995493
282	25	75			0.996473
477	71		28		1.0
478			71	28	1.0
479		28	71		1.0
483	71	28			1.0
484	71	28			1.0
485			57	28	1.0
487	14		28		1.0
490	71			28	1.0
493			71	28	1.0
494		28		71	1.0
495	28			71	1.0
496		28	71		1.0
538			14	85	0.993533
542	85		14		0.993533
547		14	85		0.993533
549		85		14	0.993533
550		85	14		0.993533
551	85		14		0.993533
557	85			14	0.993533
560	14		85		0.993533
582		90		10	0.90298
584	90		10		0.90298
586			10	90	0.90298
587	10			90	0.90298
588	90	10			0.90298
589	90	10			0.90298
593		90	10		0.90298
595		90		10	0.90298
597			90	10	0.90298
598		10	90		0.90298
600		10		90	0.90298
661		15	84		0.999986
663		84		15	0.999986
666	84			15	0.999986
667	84		15		0.999986
669		15	84		0.999986
672	84		15		0.999986
674	84			15	0.999986
676	84			15	0.999986
680		15		84	0.999986
822	88		11		0.923564
929		14		85	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
919	931	TA TA TA TA TA TA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain