SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9529

Length: 2014 nt

UniGene Fasta

>sp_v3.0_unigene9529
CGTCGTGACCTTGGCTGTCACTCAATTTTCTACCGCTGAAATGCCAAGCATTATCCAAACATGCAACCCTGCAACCTCATCCTATTGCAAATTGTCGCATGCGTACCGGACAATTATTAAATAAAAACATTCATCTCGATCCATAGTTTGAAAAAATCCAAAGCCTGAGGGCACTTACCGTAGTTGAACGTTCGTCGGCCATAGGACCCACGCTCTCCAATCTATACGATTTCTCCCCGTCCTTCATGTGACCGCACCTTTACTGGTTTGTCACCCTACTTCAGCGCCGCCTTTTCTGCAACGCCGGACAGAGCAAGGTCTTGCCTTCGAATCCCGCTAAATCTCTGATTCTGTCCCTGTCGTTGTCATTGGGGTCAATGAAACGAAGCTTCTCGTCTGTTGTATTATCGATGATTTCACACTTCGAAAGCCTCCGAGTGAATGAAGTAAGCGAAGTTTGTTAATTAATTAAGCCCGCTAGCAATGGACCACGGCCCTTCCGATAGCAGTGGAACAGATGATGATATTCCCCCACCTCATGTGAATCGAGAAGCAAGAGGAGGGGGTCGAGTTGTTCAAAATGGGAGAGTTTCTGTTGGATCACTTTTGTATGAGAGAGCCGAGTTTGACATGGAGTCTCAGATTCACCAGTTGGAACAAGAAGCATACAGTGCTGTGCTGCGGGCTTTCATTGGACAATCTGATACGTTTTCTTGGGATAAAGAGGGACTGATTTCTGATTTGAGGAAAGAACTTAGAGTTTCAGATATGGACCACAGGGAACTTCTTGGGAAAGTTAATGCAGATGAAGTACTGAGACATATAAGGGAATACCGAAAAGGCAATTTTACTCGACATAATTTTACAAAAAATGCTGCATGTTCTTTCCAGAAACGTGTTCCTACAGTTTCAGCAACTTGTAAAAGGCAAAAAACTACACCTGTGACAACCTCTTTACCTCCACATGTTCTACCACGCACTGTACATACACTGTTGGAAACAGCAGGAAAAAAAGAGCCCAGTGGAGCTCGGGAAAAGAAATCCAAAGTGATATCTTCAGGAGATATTCGATGTGAAGATTACAGGACTTTAGAGATTGGTCAAGGAGAAGCCAGGCGAGGTGAAAAAAGGTTAGCTGATCCTATTGGTCCAGTTTTACCATCTAATAGAGGGAGAGCACTTCCAAAGGGCCAGAGTTCAAAGGGCTATGGATCTTCTCAAAATGGTACACGCAACAAGGAACCTGTTAGTATTGAGTTACGCGAGACTGACAAGCTTATCAAGGAGGTGGAAAGGGTCTTTAGAGGTGATCATCTTGATCCTACCAATGTAGAGAAAGCTAAGGCGGCACTAAAAGAGCACGAGCAATCTCTTTTTGAGGCAATTGCACGACTTGGTGATGCATCCGATGAAGAAGATGGTCGGATGCTTCATCCTAATTCTTCCCATATATACATCAGCCAAGAAAGATTGTGGGGAAATAGGCAAGCAAAAGGAAGTCAAAATCTGGGTTATAGTGAAGAAGGCATAGCTCAAGTTAGTAGAAGGGAAGGTTCAGTCAGGGAACCTATGCTTGGGGCAGACATTATTGCTTTTGATGATCAGCAAGATAATGATGATGATGGTTAGTTTGTAACTTTAAGATATTTGGTTTTGCGAGGTTAGTTATTCAAGATTTCATTTAAGTTTTGGATCAATTCAAAGAAAGTTCAAATCTATCGGCTGGGATGGTTTTGTTGAGCTATTCCTCAAGATTTCAGCCAATAGATTATGCTTTGTCTTCACCATCTGATTGGTGCAAACATTCCTACGTATTTGTTTATCCTGCTCACCCAAAAAGTACAGGTTTTGCAAATTTGTATATTATAATGTCAATGGTTTCCTCAACCTTGAATTTTTGTATCTCGCTTTGTTTCAAACTTTTCTCTCCTTTGGCAAATTGTTGGAATTGCTTGAAATTTTTGTCATTGAATCCCCAGAATTTGAAATACAGAGTAAGTACTGAAGTGCAACT

Ace file of the UniGene sp_v3.0_unigene9529

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana] dbj\|BAB01962.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE75157.1\| Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana]	-	-	1.0e-33	37%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	40%
Sma3	ENT domain containing protein	-	-	2.917e-08	-

Source	Gene names
Sma3	24K23.15; GSVIVT00003740001; GSVIVT00003825001; GSVIVT00024705001; GSVIVT00025367001; OSIGBa0132E09-OSIGBa0108L24.15; OSJNBa0011F23.19; OSJNBa0015K02.6; OSJNBa0049I01.19; Os04g0659400; Os08g0328300; Os09g0279000; OsI_17760; OsI_28808; OsI_30674; OsJ_26902

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	EMSY N-terminal	IPR005491	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tudor-like, plant	IPR014002	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A3BRY9

Fln msg:

Fln protein: MDHGPSDSSGTDDDIPPPHVNREARGGGRVVQNGRVSVGSLLYERAEFDMESQIHQLEQEAYSAVLRAFIGQSDTFSWDKEGLISDLRKELRVSDMDHRELLGKVNADEVLRHIREYRKGNFTRHNFTKNAACSFQKRVPTVSATCKRQKTTPVTTSLPPHVLPRTVHTLLETAGKKEPSGAREKKSKVISSGDIRCEDYRTLEIGQGEARRGEKRLADPIGPVLPSNRGRALPKGQSSKGYGSSQNGTRNKEPVSIELRETDKLIKEVERVFRGDHLDPTNVEKAKAALKEHEQSLFEAIARLGDASDEEDGRMLHPNSSHIYISQERLWGNRQAKGSQNLGYSEEGIAQVSRREGSVREPMLGADIIAFDDQQDNDDDG*

Protein Length: 383

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCTACCGCTGAAATGCCAAGCATTATCCAAACATGCAACCCTGCAACCTCATCCTATTGCAAATTGTCGCATGCGTACCGGACAATTATTAAATAAAAACATTCATCTCGATCCATAGTTTGAAAAAATCCAAAGCCTGAGGGCACTTACCGTAGTTGAACGTTCGTCGGCCATAGGACCCACGCTCTCCAATCTATACGATTTCTCCCCGTCCTTCATGTGACCGCACCTTTACTGGTTTGTCACCCTACTTCAGCGCCGCCTTTTCTGCAACGCCGGACAGAGCAAGGTCTTGCCTTCGAATCCCGCTAAATCTCTGATTCTGTCCCTGTCGTTGTCATTGGGGTCAATGAAACGAAGCTTCTCGTCTGTTGTATTATCGATGATTTCACACTTCGAAAGCCTCCGAGTGAATGAAGTAAGCGAAGTTTGTTAATTAATTAAGCCCGCTAGCA_-_ATGGACCACGGCCCTTCCGATAGCAGTGGAACAGATGATGATATTCCCCCACCTCATGTGAATCGAGAAGCAAGAGGAGGGGGTCGAGTTGTTCAAAATGGGAGAGTTTCTGTTGGATCACTTTTGTATGAGAGAGCCGAGTTTGACATGGAGTCTCAGATTCACCAGTTGGAACAAGAAGCATACAGTGCTGTGCTGCGGGCTTTCATTGGACAATCTGATACGTTTTCTTGGGATAAAGAGGGACTGATTTCTGATTTGAGGAAAGAACTTAGAGTTTCAGATATGGACCACAGGGAACTTCTTGGGAAAGTTAATGCAGATGAAGTACTGAGACATATAAGGGAATACCGAAAAGGCAATTTTACTCGACATAATTTTACAAAAAATGCTGCATGTTCTTTCCAGAAACGTGTTCCTACAGTTTCAGCAACTTGTAAAAGGCAAAAAACTACACCTGTGACAACCTCTTTACCTCCACATGTTCTACCACGCACTGTACATACACTGTTGGAAACAGCAGGAAAAAAAGAGCCCAGTGGAGCTCGGGAAAAGAAATCCAAAGTGATATCTTCAGGAGATATTCGATGTGAAGATTACAGGACTTTAGAGATTGGTCAAGGAGAAGCCAGGCGAGGTGAAAAAAGGTTAGCTGATCCTATTGGTCCAGTTTTACCATCTAATAGAGGGAGAGCACTTCCAAAGGGCCAGAGTTCAAAGGGCTATGGATCTTCTCAAAATGGTACACGCAACAAGGAACCTGTTAGTATTGAGTTACGCGAGACTGACAAGCTTATCAAGGAGGTGGAAAGGGTCTTTAGAGGTGATCATCTTGATCCTACCAATGTAGAGAAAGCTAAGGCGGCACTAAAAGAGCACGAGCAATCTCTTTTTGAGGCAATTGCACGACTTGGTGATGCATCCGATGAAGAAGATGGTCGGATGCTTCATCCTAATTCTTCCCATATATACATCAGCCAAGAAAGATTGTGGGGAAATAGGCAAGCAAAAGGAAGTCAAAATCTGGGTTATAGTGAAGAAGGCATAGCTCAAGTTAGTAGAAGGGAAGGTTCAGTCAGGGAACCTATGCTTGGGGCAGACATTATTGCTTTTGATGATCAGCAAGATAATGATGATGATGGTTAG___TTTGTAACTTTAAGATATTTGGTTTTGCGAGGTTAGTTATTCAAGATTTCATTTAAGTTTTGGATCAATTCAAAGAAAGTTCAAATCTATCGGCTGGGATGGTTTTGTTGAGCTATTCCTCAAGATTTCAGCCAATAGATTATGCTTTGTCTTCACCATCTGATTGGTGCAAACATTCCTACGTATTTGTTTATCCTGCTCACCCAAAAAGTACAGGTTTTGCAAATTTGTATATTATAATGTCAATGGTTTCCTCAACCTTGAATTTTTGTATCTCGCTTTGTTTCAAACTTTTCTCTCCTTTGGCAAATTGTTGGAATTGCTTGAAATTTTTGTCATTGAATCCCCAGAATTTGAAATACAGAGTAAGTACTGAAGTGCAACT

Fln Alignment:

Contig9529___MDHGPSDSSGTDDDIPPPHVNREAXXXXXXXXXXXXXXXSLLYERA--EFDMESQIHQLEQEAYSAVLRAFIGQSDTFSWDKEGLISDLRKELRVSDMDHRELLGKVNADEVLRHIREY--RKGNFTRHNFTKNAACSFQK---RVPTVSATC-KRQKTTPVTTSLPPHVLPRTVHTLLETA---------GKKEPSGAREKKS-----------------------KVISSGDIRCE--DYRTLEIGQGEARRGEKRLADPIGPVLPSNRG-RALPXXXXXXXXXXXXXXTRNKEPVSIELRETDKLIKEVERVFRGDHLDPTNVEKAKAALKEHEQSLFEAIARLGDASDEEDGRMLHPNSSHIYISQERLWGNRQAKGSQN
A3BRY9______________MDYNPVDSSGTDDDLPPTYQNRGVRGSGRVSGNGRDIVSAVPYNRTKPQTDMETQIHQLEQDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGDDIIQRIRHFYSREWRETKGGLQADMVNNAQRSHDRVPSPTTSARKRQKTSQSIPSASVPVPSPAVHSQTLTAPMQPLSSATKKVAPPGTKGKKTKPDRYALVYDINTADETWEWVDFKEMAPEDIRWEGGDPGIIQQGRGATVHGGKKSSSRNGPMSGPGRGSRGPQKNTSRKEFPPSQNGVGKKSSDCIEILHTESLIKEVERVFSASNPDPLEMEKAKKVLKEHEQSLIDAIARLAEASDGESEERAQP------LQHNRGWRNHHGGNYAN

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
401	16			83	0.994512
405	83		16		0.994512
406			16	83	0.994512
407			16	83	0.994512
429	87		12		0.992554
430	87		12		0.992554
432		87		12	0.992554
470	11			88	0.923564
471		11		88	0.923564
473	88			11	0.923564
475		88	11		0.923564
476		88	11		0.923564
477		88	11		0.923564
527	88		11		0.923564
591		14		85	0.993533
636	90		10		0.90298
962		87		12	0.992554
1016	40		60		1.0
1017	20			80	0.995493
1086	20		80		0.995493
1123			20	80	0.995493
1137	20	80			0.995493
1142		80		20	0.995493
1209	70	30			1.0
1495	90			10	0.90298
1665	90		10		0.90298
1753	90		9		0.999842
1844		73	26		1.0
1902		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1613	1624	ATG ATG ATG ATG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain