SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9519

Length: 1447 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9519

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like protein kinase n=1 Tax=Nicotiana tabacum RepID=Q8LP72_TOBAC	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	1.753e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	3.141e-14	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	5.665e-17	-

Source	Gene names
Sma3	AT1G28440; AT1G34110; AT1G75820; AT2G31880; AT3G49670; AT5G07280; AT5G61480; AT5G65700; At1g09970; At1g09970/F21M12.36; At1g28440; At1g75820; At2g31880; At2g31880/F20M17.8; At3g49670; At5g07280; At5g61480; At5g65700; B1043F11.38; B1197G05.6; B1364A02.24;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	microtubule bundle formation	GO:0001578	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	meiosis	GO:0007126	Biological Process	-
Sma3	megasporogenesis	GO:0009554	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	skotomorphogenesis	GO:0009647	Biological Process	-
Sma3	detection of brassinosteroid stimulus	GO:0009729	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	tapetal cell fate specification	GO:0010234	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-
Sma3	tapetal layer development	GO:0048658	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G31880.1	SOBIR1, EVR Leucine-rich repeat protein kinase family protein chr2:13554920-13556845 FORWARD LENGTH=641	55%
RefSeq	Arabidopsis thaliana	NP_180747.1	putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002318094.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPN7

Fln msg: your sequence is shorter than subject: 395 - 737

Fln protein: APAPAPGPSHHRNGNETGAEAPAPVSQRRSHGKLNPKKRWAFGMIVGIVMGAISAFVFSFLFRMFLFYIRERPKVQGAVIYSPLIKKTEDLAFLETEEGLMSGEPIGRGGSGEVYRAQLPYGKEIAIKRIHQTAPNPSDVTEEDTKLLDRRRRQIRSELETLGHIRHRNLVALLAYVARSDCHLLVYEYMKNGSLQQALTRVREGTLELPWPTRHKIALGIASGLQYLHYNSAPKIIHRDLKPGNILLDEDFEARIADFGLAKALADTATHASSSNVAGTVGYIAPEYHQTLKFTTKCDVYSFGVVLAFLVTGKEPSHDFFQEISQASVPLWLRTIVNSETASQAIDPSLIGQGYEDQMLLVLKIACFCTDDDPRKRPTSRDVLTMLTQINNGG*

Protein Length: 396

Fln nts: GTGCTCCAGCCCCAGCTCCAGGTCCAAGCCATCATCGGAATGGAAACGAGACCGGCGCAGAAGCCCCGGCACCAGTGTCCCAGAGACGTTCGCATGGAAAGCTAAATCCTAAAAAGAGGTGGGCTTTTGGTATGATTGTAGGCATAGTAATGGGAGCAATCTCTGCATTTGTATTTTCATTTCTGTTTAGGATGTTTTTGTTCTATATCCGTGAAAGACCCAAGGTTCAGGGTGCTGTGATTTACAGTCCACTAATTAAAAAGACTGAGGATTTGGCATTCCTAGAGACAGAGGAGGGGCTTATGTCAGGAGAGCCTATAGGCAGAGGTGGGTCAGGGGAAGTTTACAGAGCACAACTTCCTTATGGAAAGGAAATTGCAATTAAGAGAATCCATCAAACAGCTCCCAATCCATCAGATGTAACGGAGGAAGATACTAAGCTCTTGGACAGACGCAGGCGCCAAATTCGCTCTGAGTTGGAGACTCTTGGTCACATCAGGCACAGAAACCTTGTTGCCCTTCTAGCTTATGTTGCAAGGTCTGATTGTCATCTACTAGTTTATGAGTACATGAAGAATGGGAGTCTGCAACAAGCCTTAACAAGGGTTAGAGAAGGTACCTTGGAATTACCCTGGCCCACTCGCCATAAGATTGCTTTGGGAATTGCCTCAGGTCTTCAATATTTGCATTATAACAGCGCTCCCAAGATCATTCATCGTGATCTCAAACCTGGAAACATTCTTCTTGATGAGGACTTTGAAGCTCGTATTGCAGATTTCGGTCTGGCAAAGGCACTTGCTGATACAGCCACCCATGCTAGTAGCTCAAATGTAGCTGGAACAGTGGGATATATTGCTCCTGAATACCATCAGACTTTGAAGTTCACAACTAAGTGTGATGTGTATAGTTTTGGGGTGGTCCTTGCTTTCCTGGTTACAGGTAAGGAACCATCCCATGATTTCTTCCAGGAAATCTCACAGGCTAGTGTTCCATTATGGCTGAGGACCATTGTCAATTCCGAGACAGCATCACAAGCCATAGATCCAAGTCTTATAGGACAGGGTTACGAGGATCAAATGTTGCTTGTCTTGAAGATTGCTTGCTTCTGCACTGACGATGATCCAAGAAAGCGTCCCACTAGCAGAGACGTCCTCACCATGCTTACACAGATCAACAATGGTGGATAG___ATTTCACTTAAGTACTGCACTCCTATAGCACATGTTTAGTTATTTCCCGTTGCTGTTATATGCCAGAAATAATGTATCTTTCATAATTTCAAGTAGAGATATTCATAAGGATGCTCTGATGAATCAGCATCCTATAATCAGCAGCACCATAATATGCTGTATATGTATTTCTGTTGTTTTTCTTTTGTTATGAACTTGGGAACTCTTATATTGTAACAACTGTATAGTAGTAAAGCATATATAGACACAACAAGTTGCCA

Fln Alignment:

Contig9519___APAPAPGPSHHRNGNETGAEAPAPVSQRRSHGKL-NPKKRWAFGMIVGIVMGAISAXXXXXXXXXXXXYIRERPKVQGAVIYSPLIKKTEDLAFLETEEGLMSGEPIGRGGSGEVYRAQLPYGKEIAIKRIHQTAPNPSDVTEEDTKLLDRRRRQIRSELETLGHIRHRNLVALLAYVARSDCHLLVYEYMKNGSLQQALTRVREGTLELPWPTRHKIALGIASGLQYLHYNSAPKIIHRDLKPGNILLDEDFEARIADFGLAKALADTATHASSSNVAGTVGYIAPEYHQTLKFTTKCDVYSFGVVLAFLVTGKEPSHDFFQEISQASVPLWLRTIVNSETASQAIDPSLIGQGYEDQMLLVLKIACFCTDDDPRKRPTSRDVLTMLTQINN
C0PPN7______________APAPAPGPSSHPNKNSS--EAPAPQLQENSHKKKHNSKERWAFGMIVGIVMGAISAFVFSFLFRMFLFYIRERPKVQGAVIYSPLIKKTEDLAFLETDEGLLSGEPIGRGGSGEVYRARLPYGKEIAIKRIHQVTPNQSDLTEEDTKLLDKRRRQIRSELETLGQIRHRNLVALLAYVARPDCHLLVYEYMKNGSLQQALTRVRDGTLELAWPIRHKIALGIASGLQYLHYNSTPKIIHRDLKPGNILLDEDFEARIADFGLAKALPEAATHASSSNVAGTVGYIAPEYHQTLKFTIKCDVYSFGVVLAFLVTGKEPSHDFFQEISQASVPIWLRSIVNSEKASQAIDPSLVGKGYEDQILLVLKIACFCTDDDPRKRPTSRDVFTMLTQINN

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
453	66		33		0.997452
458	25		75		0.996473
459	25		75		0.996473
463		75	25		0.996473
465	75	25			0.996473
466	75			25	0.996473
651	20		80		0.995493
666	20			80	0.995493
694	85		14		0.993533
831		21		78	1.0
891	20			80	0.999996
1024	84		15		0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain