SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9517

Length: 2227 nt

UniGene Fasta

>sp_v3.0_unigene9517
CATATGCATGGATAGTACCTGTGCGCATGACGCATGCCGGCCTGCTGTGGACTTTACGGTGGAGTTTGATGTATGCAGCCCATGTCATTCAGATCCCGGAGCTTGTTTCCCTGTCGCAGCGACGTCTTCTAAACTTTGTCGAAAGGGCTCAAGTAGAGGATGTGATATCTATTCTTATAGCAGCAAATGTATGTGAGACTGGCAATGATCAGTTATTGACTCGTTGTATTCAACGAGTGGGGAGATCTGATCTTGACAATGTAGCGCTTGATAAGGAACTCCCACAGGAAGTTGTAAAAAGAGTCAAAGAATTCCGATCGAGTTTGGGAGTAGCAACATTCCCAAGTTCTTCACAGCAAAAGAATATACAGAGAATTCAGAGAGCACTTGACTCTGATGATGTTGAATTGGTTAAATTGCTATTGCAAGAAGGGGAGGGCAAGATAACATTGGATGATGCATATGCCTTGCACTATGCTGCAGCATACTGTGATCCAAAGATCACATCAGAGCTGTTGGATCTTGGATGTGCAGATGTTAATCTCAAAAACCAAAGAGGATACACTGTTCTTCACATAGCAGCAATGCGCAGGGAACCTGCAACAATTGTGGCACTCTTGAACAAAAGAAGCTAACCCTTCTGAGTTGTCTTTTGATGAGCGAACAGCACTTCAGATCGCTAAGAGGCTAACAAGAGCTATAGATTACTGTCGAACCACAGATGAAGGCAAGGAATCTCCCAAGGACAGACTATGCATTGAGATACTGGAGCGGGCAGAAAGTAGGAATCCACTAAGGGCTGAGGTGCCCTTTTCTCTTGCTTTTGCAGGTGAGGATATGCGGACAAAATTGCTCGATCTTGAAAACAGAGTTGCCTTGGCAAAGATCCTGTTTCCCACCGAAGCAAAATTAGCTATGGAAATAGCACATGTGGATGCGACATCAGAGTTCACTGTGGATCTAAATGAGACACCTACTGCTGTGATGACTAAGAAATTCATAGCTAGAATGAAAGCTCTATCAAGAACTGTTGAGTTAGGAAAGCATTTCTTTCCTCGGTGTTCAGCCGTCTTAAATAAAATTATGGACGATGACTTGCCAGAGATCACTTTGGAAGAACAAAGAGTAAAACGTAAACGGTATGATGAGCTCAAGAATGTTGTATCAGAAGCATTCAGCAAGGATAAAGCAGACATTGAGAAGTCGGGTATGTCCTCTTCATCATCTTCATCATCTGTAAGAGATGGGCTGAGACACAAGAGCAAATACCGCTAGACTGGTTTCCTTTTATAGTGATCTATTAATGCCGAAAATTACTAATGGAACTTATTCAAGAACACCTTTTTACAATGCTAGCATAAATGGGACTCCTCTGATCTACTGTAGGCAATTTTGGGAGGTGGAGCTATAAAAGTGCTCAGTTCTAGAATATATGATAGTAATGGGGGTTAGCCTTTGGAAGCTTTTCTCCTATTTTAAGCTAGAAAAAATATGGAAAAACTTGTATTTCTTTGTCTAAAAGCAACCAGCTACATTATGCCACTTCCATGATCTCCAAAACCTTGCTTTCATAATATGGCAGCGCCTTGTTGAAAATCTGTTTGAAGTTAATAACCCAATCCCAGTGAACAGACTGCATTCAGGAAAATGGCAGTCGTGACAGTAAGCTGATATTTGCATGCTAGACTACTATGCGTACATGTGCATCTCAATAGCAAGTGATTTATTGCTATAGCCCTTGGAAAGGAGATATGCACCTCTTACTCGTGTACAATAGAATTCAACTGTATACTAATAGTAGTAACTTAGCAGGAGGTGCAAAGTTTCCCAAAAAGGATTTTTGAGGTGCCTGAGATAAACTATTTTCATCTTCTTCTTGGATTGATCTAAAACAACTGAATATTCTGCTTTCACTTTGTTGGGATTATTCATATTGTCTTAGAGCAGAGTGTCTTTGAGCTATGATGCCACACATGAATAGCAACTCTCGGGTGTGTTGTGTTGGCCCCATTTGGTTATTTAGTGCTGATTCTTATTGCATATTTTTGGGAGGTTGTCATTTCTGTCTATGCACTTCGAAGACAGCGTTGTGCATACGCGCTTCAAAGGCTCATTTGTATCATTCTATTTGGATTTGAAACATGGTGCCCTTTTATTTATGTGAATAATTTAATTGAGGTGCAAGCTTCCTGATCATCATATGTATCGATTTGTATTTACTTGAAAC

Ace file of the UniGene sp_v3.0_unigene9517

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Regulatory protein NPR1, putative n=1 Tax=Ricinus communis RepID=B9RK83_RICCO	-	-	0.0	55%
FL-Next	sp=Regulatory protein NPR4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Sma3	NPR1-like protein	-	-	2.921e-36	-

Source	Gene names
Sma3	AT4g19660; AT4g26120; At4g19660; At4g26120; At5g45110; B1143G03.10; F20B18.230; GSVIVT00016536001; GSVIVT00031933001; LOC_Os03g46440; NH1; NIM1; NML1; NML2; NPR1; NPR1-like; NPR1A; NPR1B; NPR2; NPR3; NPR4; NPR41; OSJNBa0056E06.6; OSJNBb0053G03.24; Os01g01

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G19660.1	NPR4, ATNPR4 NPR1-like protein 4 chr4:10696266-10698243 REVERSE LENGTH=574	53%
RefSeq	Arabidopsis thaliana	NP_193701.2	NPR1-like protein 4 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002308281.1	NPR1/NIM1-like regulatory protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q5ICL9

Fln msg: Separated hits, possible frame ERROR between 64 and 66, and overlapping frame ERROR between 626 and 625, your sequence is shorter than subject: 426 - 574

Fln protein: ICMDSTCAHDACRPAVDFTVxxLMYAAHVIQIPELVSLSQRRLLNFVERAQVEDVISILIAANVCETGNDQLLTRCIQRVGRSDLDNVALDKELPQEVVKRVKEFRSSLGVATFPSSSQQKNIQRIQRALDSDDVELVKLLLQEGEGKITLDDAYALHYAAAYCDPKITSELLDLGCADVNLKNQRGYTVLHIAAMRREPATIVALLxxxEANPSELSFDERTALQIAKRLTRAIDYCRTTDEGKESPKDRLCIEILERAESRNPLRAEVPFSLAFAGEDMRTKLLDLENRVALAKILFPTEAKLAMEIAHVDATSEFTVDLNETPTAVMTKKFIARMKALSRTVELGKHFFPRCSAVLNKIMDDDLPEITLEEQRVKRKRYDELKNVVSEAFSKDKADIEKSGMSSSSSSSSVRDGLRHKSKYR*

Protein Length: 427

Fln nts: CATATGCATGGATAGTACCTGTGCGCATGACGCATGCCGGCCTGCTGTGGACTTTACGGTGGAxxxTTTGATGTATGCAGCCCATGTCATTCAGATCCCGGAGCTTGTTTCCCTGTCGCAGCGACGTCTTCTAAACTTTGTCGAAAGGGCTCAAGTAGAGGATGTGATATCTATTCTTATAGCAGCAAATGTATGTGAGACTGGCAATGATCAGTTATTGACTCGTTGTATTCAACGAGTGGGGAGATCTGATCTTGACAATGTAGCGCTTGATAAGGAACTCCCACAGGAAGTTGTAAAAAGAGTCAAAGAATTCCGATCGAGTTTGGGAGTAGCAACATTCCCAAGTTCTTCACAGCAAAAGAATATACAGAGAATTCAGAGAGCACTTGACTCTGATGATGTTGAATTGGTTAAATTGCTATTGCAAGAAGGGGAGGGCAAGATAACATTGGATGATGCATATGCCTTGCACTATGCTGCAGCATACTGTGATCCAAAGATCACATCAGAGCTGTTGGATCTTGGATGTGCAGATGTTAATCTCAAAAACCAAAGAGGATACACTGTTCTTCACATAGCAGCAATGCGCAGGGAACCTGCAACAATTGTGGCACTCTTGAxxxxxxAAGAAGCTAACCCTTCTGAGTTGTCTTTTGATGAGCGAACAGCACTTCAGATCGCTAAGAGGCTAACAAGAGCTATAGATTACTGTCGAACCACAGATGAAGGCAAGGAATCTCCCAAGGACAGACTATGCATTGAGATACTGGAGCGGGCAGAAAGTAGGAATCCACTAAGGGCTGAGGTGCCCTTTTCTCTTGCTTTTGCAGGTGAGGATATGCGGACAAAATTGCTCGATCTTGAAAACAGAGTTGCCTTGGCAAAGATCCTGTTTCCCACCGAAGCAAAATTAGCTATGGAAATAGCACATGTGGATGCGACATCAGAGTTCACTGTGGATCTAAATGAGACACCTACTGCTGTGATGACTAAGAAATTCATAGCTAGAATGAAAGCTCTATCAAGAACTGTTGAGTTAGGAAAGCATTTCTTTCCTCGGTGTTCAGCCGTCTTAAATAAAATTATGGACGATGACTTGCCAGAGATCACTTTGGAAGAACAAAGAGTAAAACGTAAACGGTATGATGAGCTCAAGAATGTTGTATCAGAAGCATTCAGCAAGGATAAAGCAGACATTGAGAAGTCGGGTATGTCCTCTTCATCATCTTCATCATCTGTAAGAGATGGGCTGAGACACAAGAGCAAATACCGCTAGACTGGTTTCCTTTTATAGTGATCTATTAATGCCGAAAATTACTAATGGAACTTATTCAAGAACACCTTTTTACAATGCTAGCATAAATGGGACTCCTCTGATCTACTGTAGGCAATTTTGGGAGGTGGAGCTATAAAAGTGCTCAGTTCTAGAATATATGATAGTAATGGGGGTTAGCCTTTGGAAGCTTTTCTCCTATTTTAAGCTAGAAAAAATATGGAAAAACTTGTATTTCTTTGTCTAAAAGCAACCAGCTACATTATGCCACTTCCATGATCTCCAAAACCTTGCTTTCATAATATGGCAGCGCCTTGTTGAAAATCTGTTTGAAGTTAATAACCCAATCCCAGTGAACAGACTGCATTCAGGAAAATGGCAGTCGTGACAGTAAGCTGATATTTGCATGCTAGACTACTATGCGTACATGTGCATCTCAATAGCAAGTGATTTATTGCTATAGCCCTTGGAAAGGAGATATGCACCTCTTACTCGTGTACAATAGAATTCAACTGTATACTAATAGTAGTAACTTAGCAGGAGGTGCAAAGTTTCCCAAAAAGGATTTTTGAGGTGCCTGAGATAAACTATTTTCATCTTCTTCTTGGATTGATCTAAAACAACTGAATATTCTGCTTTCACTTTGTTGGGATTATTCATATTGTCTTAGAGCAGAGTGTCTTTGAGCTATGATGCCACACATGAATAGCAACTCTCGGGTGTGTTGTGTTGGCCCCATTTGGTTATTTAGTGCTGATTCTTATTGCATATTTTTGGGAGGTTGTCATTTCTGTCTATGCACTTCGAAGACAGCGTTGTGCATACGCGCTTCAAAGGCTCATTTGTATCATTCTATTTGGATTTGAAACATGGTGCCCTTTTATTTATGTGAATAATTTAATTGAGGTGCAAGCTTCCTGATCATCATATGTATCGATTTGTATTTACTTGAAAC

Fln Alignment:

Contig9517___CMDSTCAHDACRPAVDFTVExLMYAAHVIQIPELVSLSQRRLLNFVERAQVEDVISILIAANVCETGNDQLLTRCIQRVGRSDLDNVALDKELPQEVVKRVKEFR-SSLGVATFPSSSQQKNIQRIQRALDSDDVELVKLLLQEGEGKITXXXXXXXXXXXXXCDPKITSELLDLGCADVNLKNQRGYTVLHIAAMRREPATIVALLNxEANPSELSFDERTALQIAKRLTRAIDYCRTTDEGKESPKDRLCIEILERAESRNPL-RAEVPFSLAFAGEDMRTKLLDLENRVALAKILFPTEAKLAMEIAHVDATSEFT-----------------VDLNETPTAVMTKKFIARMKALSRTVELGKHFFPRCSAVLNK----IMDDDLPEI------TLEEQRVKRKRYDELKNVVSEAFSKDK
Q5ICL9______________CVDSVCAHDSCKPAIDFAVExLMYASFVFQIPDLVSSFQRKLRNYVEKSLVENVLPILLVAFHCDL--TQLLDQCIERVARSDLDRFCIEKELPLEVLEKIKQLRVKSVNIPEVEDKSIERT-GKVLKALDSDDVELVKLLLTESD--ITLDQANGLHYAVAYSDPKVVTQVLDLDMADVNFRNSRGYTVLHIAAMRREPTIIIPLIQxGANASDFTFDGRSAVNICRRLTRPKDY-HTKTSRKEPSKYRLCIDILEREIRRNPLVSGDTPTCSHSMPEDLQMRLLYLEKRVGLAQLFFPAEANVAMDVANVEGTSECTGLLTPPPSNDTTENLGKVDLNETP-YVQTKRMLTRMKALMKTVETGRRYFPSCYEVLDKYMDQYMDEEIPDMSYPEKGTVKERRQKRMRYNELKNDVKKAYSKDK

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
908	80		20		0.995493
909	80			20	0.995493
910	80	20			0.995493
911	80		20		0.995493
913			20	80	0.995493
915		20	80		0.995493
922	80	20			0.995493
923	80			20	0.995493
924	80		20		0.995493
926	80	20			0.995493
927	20		80		0.995493
929	80			20	0.995493
1003		10		90	0.90298
1122		88		11	0.923564
1124	90			10	0.90298
1125	88		11		0.923564
1127	88		11		0.923564
1218			11	88	0.923564
1796		87	12		0.992554
1797			12	87	0.992554
1798	87		12		0.992554
1846		20		80	0.995493
1848	80			20	0.995493
1849		20	80		0.995493
1857			80	20	0.995493
1858	80		20		0.995493
1860	80	20			0.995493
1862	80			20	0.995493
1863	80	20			0.995493
1868		20		80	0.995493
1869	20			80	0.995493
2028	16		83		0.994512
2031		83		16	0.994512
2186			90	10	0.90298
2188	12	87			0.992554
2190	87	12			0.992554
2192		85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain