SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9497

Length: 2458 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene9497
TGAAGACCAATTTGGTTTTCAGAATCAACTAGTTTAACCTTTCGGCCAGGACTAACCTGGTAGCGCCTTTCAGGTGCTTTCAGTCAAGACCAACCCTCCACTATATGGGGAAGAAGAAAGGCCTGCACAGCAACACGGTGTGTACTAAGCTGGACATGTGCAGCCCTGCGACGGCCTGCTTCTTCTGCATCATGAAGGAGCAGAATGCTATCAAGCGGCGCGCCGCCATCACCAAATACTTCAAGGAAATGCCATCCAGGAACGAGCAGGGGCAAGTGCTGGTGATGAGTGGGCTGTGGAATATAGCAATGGCAGAGCCCAATGATCCAGAATTCCCAAAATTGGGCATCATGGAGTGCATGGCATGTCTGATCAAGAAGGGGCTTAAGGACAGGAGATGGCTTTTGAGGGACCAGAATGTGTATATTCCTTACTATGCTGCTCATATAATTGGATCCTACTGCATGAATGTGGAGGAATTCGCTGAGATGGCAGTGGAAGCAGGAGTGATTCAACCTTTGGTTGAGCTTATGAGGGGGAGAATGACGTGGGTAGAGCAGAGAGTCGCAGTGAGGGCTCTGGGACATTTGGCTACTTACCAGACCACGTTTATTGCAGTCTCTGTGTGCAAAGAGATTGTAGAATTGGCCATGGAATTGTCATCCAGGTGTTTGGAGATTGTCTATACACAATTCCTGCAATGCCCGCCAAGCAAGAGGCCGCGGTATCGATTGTGATTTGTTGACCAGAGGGATGGGGGGGACCAGATGGAGAACAGGAAGGCTGAGGAATGGGCAAGTCAGCTGCAATGCTGGTCTCTACATCTGCTCAATTGCTTTGCCTACAGGGATAAGTTCGTTCCCTTCATTTGCAGGCCTGGTTTTCTGAAGAAACTGCCCAAGATGTGGGGTGGCCTGGTGAATGAGAATTCTCCTGCTGGTGTTGGGCTTCTGAGGATTCTGTGTTATCACAAAGTGGGCAAAAGCTTCATTGCAGACTCTGGGGAGATCGTCGATTGGCTTTGTAATACCGCGCGGTCTTCAGATGATTGGCAATACATGGCAATTGAGTGCCTGCTACTTCTGCTTCAGGATCATGACACGCGAAGTAAGGTGATTGACAAAGCCATAGTAGCTCTTGTAGATTTGGCAGAGACGGAGACCTTAGGAGACCAAAAAAGGGTCGGAGAGATGATTACGGAGGTCCTACTCAAACAACATAAACGTGCAAATTCACATACACATAACTCTTCCAAGAGGGCTTCCTCAATTACCAGGCAATTTCTGGATGAGCTCTGGAGCTTAAGACAACGATGAAATGGGAACAAAGAATGTCGAAAGAGGATCTGCGTGTAAAAAGAGCAGCAGCTATGGTGGTAAAACTGGAAGGGAATACACAATTCTCGACTGGGGACCTCAAAGGAGCTGTGTCTAAGTACACAGAAGCCTTAGCCTTGTGCCCCTTGAAGATTAGGAAGGAAAGAGTGGTTCTCTACAGTAACAGAGCACAATGCCATCTTCTTCTACATGACTCAGACTCGGCAATCAGTGATACAACCAGAGCACTTTCCATTTCCAACCCGGTCAACAGCCACAGCAAGAGCCTGTGGAGAAGAGCTCAAGCCTATGACATGAAAGGCTTGGCCAAGGAGAGTTTGCTTGATGCTATTATGTTCATCAACGAGTGCTCCATCTTGAATGGCTACACTGATAAGAAATATGTTAAGATCCCTTATTACGCTGCCCAAATGGTGAGGAAGCAGATGCATGCAGCTTGGCTCTTCATTGATGCTGCTCAAAAACATGGAAATATATCGGTCTTCAACGGGGATCACAATCAATCTGAGTCGTCATCATCTTCTTCTTCTTTGCCATCAGAAGCACAAGAAGGGGAAGCTGAATCAGAGTGGGAAACCGTGAGTGAAGGCTCTGAAGGGGCAACTGCAATAAGCCCCCAGAATCATCAGGATTATGCAAAAAATGCAAATGCAAACGGGAAATCCCATCAGCTCGAGTTATCTTCATTTGCATCTAAGGCAGGAGGTGATTAATTCTACCGGGCATTGAATGGGAGATCGAATGCATCAACGGTGGCTGTGGCAATAAATAACAGTACAGGTCAAGCCCAAGTGAATTCTGGTATGGCAACAACAATGATGTTGTTGCCAACCATCAAGGAAGAATCTATATCAGAGGAGGAGAAATTAGAGCAGAAGAAGCAGAAATGGATCAGACATGAACAAGCCATAATGAAGAACAAAAATAATGAGTGCAAAGCTCCTTCGAGGACCAAGTTCAAGGCTGAATACAAACATCAGTCCTAGTCATTTTATTTGTAAATATATTCTTAAGGTGAGACTTTAGTATTATCAACTTGCATCAAATTTCTTGGAGTTAGGATTTGAATCCCTTTGTCATGTTCTAGGACACATGGAAGGTCAGCACCCTGATCCCAATAG

Ace file of the UniGene sp_v3.0_unigene9497 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ARM-repeat/tetratricopeptide repeat-like protein [Arabidopsis thaliana] dbj\|BAF01564.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED91507.1\| ARM-repeat/tetratricopeptide repeat-like protein [Arabidopsis thaliana]	-	-	0.0	59%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	60%
Sma3	Heat shock protein 70 (HSP70)-interacting protein, putative	-	-	5.731e-11	-

Source	Gene names
Sma3	80A08_17; At3g50030; At5g10200; At5g43120; F3A4.110; GSVIVT00010915001; GSVIVT00014927001; GSVIVT00019622001; LOC_Os03g10980; OSJNBa0014O06.11; OSJNBb0092E21.8; Os05g0421300; OsI_10464; OsI_20013; OsJ_09855; OsJ_18590; PHYPADRAFT_145619; PHYPADRAFT_188847

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G10200.1	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein chr5:3202378-3204367 FORWARD LENGTH=631	59%
RefSeq	Arabidopsis thaliana	NP_196582.2	ARM-repeat/tetratricopeptide repeat-like protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002304309.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SVL4

Fln msg: Overlapping hits, possible frame ERROR between 1313 and 1301,

Fln protein: MGKKKGLHSNTVCTKLDMCSPATACFFCIMKEQNAIKRRAAITKYFKEMPSRNEQGQVLVMSGLWNIAMAEPNDPEFPKLGIMECMACLIKKGLKDRRWLLRDQNVYIPYYAAHIIGSYCMNVEEFAEMAVEAGVIQPLVELMRGRMTWVEQRVAVRALGHLATYQTTFIAVSVCKEIVELAMELSSRCLEIVYTQFLQCPPSKRPRYRL*FVDQRDGGDQMENRKAEEWASQLQCWSLHLLNCFAYRDKFVPFICRPGFLKKLPKMWGGLVNENSPAGVGLLRILCYHKVGKSFIADSGEIVDWLCNTARSSDDWQYMAIECLLLLLQDHDTRSKVIDKAIVALVDLAETETLGDQKRVGEMITEVLLKQHKRANSHTHNSSKRASSITRQFLDELWxxxxxxKWEQRMSKEDLRVKRAAAMVVKLEGNTQFSTGDLKGAVSKYTEALALCPLKIRKERVVLYSNRAQCHLLLHDSDSAISDTTRALSISNPVNSHSKSLWRRAQAYDMKGLAKESLLDAIMFINECSILNGYTDKKYVKIPYYAAQMVRKQMHAAWLFIDAAQKHGNISVFNGDHNQSESSSSSSSLPSEAQEGEAESEWETVSEGSEGATAISPQNHQDYAKNANANGKSHQLELSSFASKAGGD*

Protein Length: 650

Fln nts: TGAAGACCAATTTGGTTTTCAGAATCAACTAGTTTAACCTTTCGGCCAGGACTAACCTGGTAGCGCCTTTCAGGTGCTTTCAGTCAAGACCAACCCTCCACTAT_-_ATGGGGAAGAAGAAAGGCCTGCACAGCAACACGGTGTGTACTAAGCTGGACATGTGCAGCCCTGCGACGGCCTGCTTCTTCTGCATCATGAAGGAGCAGAATGCTATCAAGCGGCGCGCCGCCATCACCAAATACTTCAAGGAAATGCCATCCAGGAACGAGCAGGGGCAAGTGCTGGTGATGAGTGGGCTGTGGAATATAGCAATGGCAGAGCCCAATGATCCAGAATTCCCAAAATTGGGCATCATGGAGTGCATGGCATGTCTGATCAAGAAGGGGCTTAAGGACAGGAGATGGCTTTTGAGGGACCAGAATGTGTATATTCCTTACTATGCTGCTCATATAATTGGATCCTACTGCATGAATGTGGAGGAATTCGCTGAGATGGCAGTGGAAGCAGGAGTGATTCAACCTTTGGTTGAGCTTATGAGGGGGAGAATGACGTGGGTAGAGCAGAGAGTCGCAGTGAGGGCTCTGGGACATTTGGCTACTTACCAGACCACGTTTATTGCAGTCTCTGTGTGCAAAGAGATTGTAGAATTGGCCATGGAATTGTCATCCAGGTGTTTGGAGATTGTCTATACACAATTCCTGCAATGCCCGCCAAGCAAGAGGCCGCGGTATCGATTGTGATTTGTTGACCAGAGGGATGGGGGGGACCAGATGGAGAACAGGAAGGCTGAGGAATGGGCAAGTCAGCTGCAATGCTGGTCTCTACATCTGCTCAATTGCTTTGCCTACAGGGATAAGTTCGTTCCCTTCATTTGCAGGCCTGGTTTTCTGAAGAAACTGCCCAAGATGTGGGGTGGCCTGGTGAATGAGAATTCTCCTGCTGGTGTTGGGCTTCTGAGGATTCTGTGTTATCACAAAGTGGGCAAAAGCTTCATTGCAGACTCTGGGGAGATCGTCGATTGGCTTTGTAATACCGCGCGGTCTTCAGATGATTGGCAATACATGGCAATTGAGTGCCTGCTACTTCTGCTTCAGGATCATGACACGCGAAGTAAGGTGATTGACAAAGCCATAGTAGCTCTTGTAGATTTGGCAGAGACGGAGACCTTAGGAGACCAAAAAAGGGTCGGAGAGATGATTACGGAGGTCCTACTCAAACAACATAAACGTGCAAATTCACATACACATAACTCTTCCAAGAGGGCTTCCTCAATTACCAGGCAATTTCTGGATGAGCTCTGGxxxxxxxxxxxxxxxxxxAAATGGGAACAAAGAATGTCGAAAGAGGATCTGCGTGTAAAAAGAGCAGCAGCTATGGTGGTAAAACTGGAAGGGAATACACAATTCTCGACTGGGGACCTCAAAGGAGCTGTGTCTAAGTACACAGAAGCCTTAGCCTTGTGCCCCTTGAAGATTAGGAAGGAAAGAGTGGTTCTCTACAGTAACAGAGCACAATGCCATCTTCTTCTACATGACTCAGACTCGGCAATCAGTGATACAACCAGAGCACTTTCCATTTCCAACCCGGTCAACAGCCACAGCAAGAGCCTGTGGAGAAGAGCTCAAGCCTATGACATGAAAGGCTTGGCCAAGGAGAGTTTGCTTGATGCTATTATGTTCATCAACGAGTGCTCCATCTTGAATGGCTACACTGATAAGAAATATGTTAAGATCCCTTATTACGCTGCCCAAATGGTGAGGAAGCAGATGCATGCAGCTTGGCTCTTCATTGATGCTGCTCAAAAACATGGAAATATATCGGTCTTCAACGGGGATCACAATCAATCTGAGTCGTCATCATCTTCTTCTTCTTTGCCATCAGAAGCACAAGAAGGGGAAGCTGAATCAGAGTGGGAAACCGTGAGTGAAGGCTCTGAAGGGGCAACTGCAATAAGCCCCCAGAATCATCAGGATTATGCAAAAAATGCAAATGCAAACGGGAAATCCCATCAGCTCGAGTTATCTTCATTTGCATCTAAGGCAGGAGGTGATTAA___TTCTACCGGGCATTGAATGGGAGATCGAATGCATCAACGGTGGCTGTGGCAATAAATAACAGTACAGGTCAAGCCCAAGTGAATTCTGGTATGGCAACAACAATGATGTTGTTGCCAACCATCAAGGAAGAATCTATATCAGAGGAGGAGAAATTAGAGCAGAAGAAGCAGAAATGGATCAGACATGAACAAGCCATAATGAAGAACAAAAATAATGAGTGCAAAGCTCCTTCGAGGACCAAGTTCAAGGCTGAATACAAACATCAGTCCTAGTCATTTTATTTGTAAATATATTCTTAAGGTGAGACTTTAGTATTATCAACTTGCATCAAATTTCTTGGAGTTAGGATTTGAATCCCTTTGTCATGTTCTAGGACACATGGAAGGTCAGCACCCTGATCCCAATAG

Fln Alignment:

Contig9497___PATACFFCIMKEQNAIKRRAAITKYFKEMPSRNEQGQVLVMSGLWNIAMAEPNDPEFPKLGIMECMACLIKKGLKDRRWLLRDQNVYIPYYAAHIIGSYCMNVEEFAEMAVEAGVIQPLVELMRGRMTWVEQRVAVRALGHLATYQTTFIAVSVCKEIVELAMELSSRCLEIVYTQFLQCPPSKRPRYRL*FVDQRDGGDQMENRKAEEWASQLQCWSLHLLNCFAYRDKFVPFICRPGFLKKLPKMWGGLVNENSPAGVGLLRILCYHKVGKSFIADSGEIVDWLCNTARSSDDWQYMAIECLLLLLQDHDTRSKVIDKAIVALVDLAETETLGDQKRVGEMITEVLLKQHKRANSHTHNSS---KRASSITRQFLDELWSxxxxMKWEQRMSKEDLRVKRAAAMVVKLEGNTQFSTGDLKGAVSKYTEALALCPLKIRKERVVLYSNRAQCHLLLHDSDSAISDTTRALSISNPVNSHSKSLWRRAQAYDMKGLAKESLLDAIMFINECSILNGYTD--KKYVKIPYYAAQMVRKQMHAAWLFIDAAQKHGNI
A9SVL4______________PYPGCFFCVMKETNLSKRRSNVAKFFKELPSQNEDGQVLAISGLWNTAMAHPNDPEFIELGIFECMARLIWKGIEDRNWLAQDQNIYIPYYAAHIIGSYTMNVEEFAEQAVRAGVIPALVELLRDRLTWVEQRVAVRALGHLATYDSTFPAVAAHTDILELSIQLAIDALEIVYTHFLQF-VDKRLSYHCDLLTRGMGGLEMESRKAEEWASQLQCWSLQLINCYAFKEEFLPTICQPDFLGQLPSMWGGLVNENSPAGVGVLRTICHQRFGRIPVAENPGIIEALCNIARSSDDWQYMAVDCLVWLLQDPNTRLKVLDKAAVALVDLAELPSLGEHKRLGEVLTNVLLEDY-----IPHPSSAVIAHISTSTRHLLDDFAAxxxxTKWERTVPKEDLQIKQAAALVVKLEGNSRFSAGDISGAAAKYTEALSLCPVRAKKERVVLHSNRAQCHLLLHNAEGAISDTTRALSIHNPVNRHSKSLWRRAQAYELLSLHKESLLDAIMFINECSQQPGSESDFKSGNKVPDYVERLVKKQMQASWLFKDAALKHGEI

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
82		25		75	0.996473
346		20	80		0.995493
347		20		80	0.995493
349	20	80			0.995493
383		25		75	0.996473
409	33		66		0.997452
816		66	33		0.997452
817	33	66			0.997452
818			33	66	0.997452
822	33	66			0.997452
826		33	66		0.997452
827	25	75			0.996473
830	25	50	25		0.995533
831			25	75	0.996473
832			25	75	0.996473
836		25		75	0.996473
838	25			75	0.996473
840	75		25		0.996473
1466		80		20	0.995493
1482	80	20			0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
591	603	AAG AAG AAG AAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain