SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9466

Length: 1147 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene9466 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum (Blue gem) (Torenia plantagineum).	-	-	0.0	57%
Sma3	Desiccation-related protein PCC13-62, putative	-	-	4.502e-14	-

Source	Gene names
Sma3	At3g62730; F26K9_160; GSVIVT00027963001; GSVIVT00032375001; GSVIVT00033179001; H0502B11.4; LOC_Os03g22470; MtrDRAFT_AC173289g11v1; MtrDRAFT_AC173289g13v1; MtrDRAFT_AC173289g3v1; OJ000315_02.8; OSJNBa0072C16.1; OSJNBb0118P14.11; Os03g0345300; Os04g0404400;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G47980.1	" unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expan	64%
RefSeq	Arabidopsis thaliana	NP_564518.1	uncharacterized protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002311374.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P22242

Fln msg: atg_distance in limit (1-15): atg_distance = 15, your sequence is shorter than subject: 287 - 313

Fln protein: MPAYNPGPVAAGDIDWLEFPLNLEYLEAEFFLWSAFGYGLDHVAPELVSGGPPPIGVQKANLDPLVLNVVKEFGYQEVGHLRALKKTVEGFPRPQLNLTAANFGNIINAAFNTTLSPSFNPYANSVNYLLASYFIPYVGLTGYVGANAQLQSPTAKRLVAGLLGVESGQDAVIRGLLYERAFEKVAPYPYTVAEFTDRISTLRNSLGQSGIADEGLLVPLALGAEGKLTGNILAGDKYSVAYARSPAQILRIVYSSGNESSPGGFYPHGASGSFARHYLSPSTTAS*

Protein Length: 288

Fln nts: CACGAGGCAGTCACATCCTCATCCGTCACCAAGTAGCG_-_ATGCCAGCTTACAACCCTGGACCAGTTGCAGCAGGGGATATTGACTGGCTTGAATTTCCTCTAAATTTAGAGTACCTGGAAGCCGAATTTTTCTTGTGGTCAGCCTTTGGTTATGGGCTGGATCATGTTGCACCGGAGCTCGTAAGCGGCGGGCCACCTCCTATAGGCGTACAGAAGGCTAATCTCGACCCATTGGTTCTAAATGTTGTCAAAGAATTTGGGTACCAGGAGGTTGGTCACCTCAGGGCTTTAAAGAAAACTGTAGAGGGCTTTCCTAGACCCCAACTGAATCTGACCGCCGCAAATTTTGGCAATATCATCAACGCTGCATTTAATACAACTTTGTCGCCTTCTTTTAATCCATATGCTAATAGTGTGAACTATCTGCTTGCAAGTTATTTTATCCCCTATGTCGGACTTACAGGCTATGTCGGCGCCAATGCTCAACTCCAATCTCCCACTGCTAAGCGGCTGGTAGCGGGGCTTCTTGGAGTGGAGTCGGGACAGGACGCAGTGATCCGTGGGTTATTGTATGAACGAGCATTTGAGAAAGTCGCGCCATATCCGTACACAGTAGCAGAATTCACTGACAGGATCTCTACGCTCCGGAATTCTCTGGGACAGTCTGGAATTGCTGACGAAGGACTGTTAGTTCCACTCGCATTGGGAGCAGAGGGAAAACTTACTGGGAACATTCTTGCAGGCGATAAATATTCTGTTGCGTATGCCCGCAGTCCTGCCCAAATTCTGAGGATAGTCTACTCATCGGGTAATGAATCATCTCCCGGCGGATTCTACCCTCATGGCGCTAGTGGAAGTTTTGCGCGCCATTACCTCTCACCCTCCACAACAGCATCGTAA___AACCAGAGTTTCTTGTAGCCACTCTGTTATTTTCTCTCTCAATTCGTAGGTTTTTGTATGAAAATGGGATTTTAATCTCTTCTTCCTAACATCGATATCGATGTAGTCAGCGCCCTTTAATTGCGTTTTTTCCACCTCCCAGACTCTCTTTTCGAATAAATTGAAACACATGAACCTACAACTTCAATTTTTATCCATGCTTACTGTTCATTTATATCGAGTCAAATATTAAAGTGATTATTACGGTT

Fln Alignment:

Contig9466___VAAGDIDWLEFPLNLEYLEAEFFLWSAFGYGLDHVAPELVSGGPPPIGVQKANLDPLVLNVVKEFGYQEVGHLRALKKTVEGFPRPQLNLTXXXXXXXXXXXXNTTLSPSFNPYANSVNYLLASYFIPYVGLTGYVGANAQLQSPTAKRLVAGLLGVESGQDAVIRGLLYERAFEKVAPYPYTVAEFTDRISTLRNSLGQSGIADEGLLVPLALGAEGKLTGNILAGDKYSVAYARSPAQILRIVYSSGNESSPGGFYPHGASG
P22242______________IPKSDVSLLEFPLNLELLEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLSPFIRDIIAQFAYQEFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINYLLACYVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPYGITVAEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPERCLGSCTAAAMRPSPAAFIPKAPTG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
855		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain