SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9462

Length: 1455 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene9462 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Membrane fusion protein Use1 [Arabidopsis thaliana] gb\|AAT06449.1\| At3g55600 [Arabidopsis thaliana] gb\|AEE79406.1\| Membrane fusion protein Use1 [Arabidopsis thaliana]	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	51%
Sma3	Cation exchanger-like protein	-	-	1.925e-14	-

Source	Gene names
Sma3	At1g54110; At3g55595; At3g55600; F15I1.20; F1I16_10; GSVIVT00000672001; GSVIVT00031318001; Os02g0306100; Os08g0533700; Os08g0534300; Os09g0272500; OsI_30644; OsJ_06395; OsJ_28069; OsJ_28072; OsJ_28624; P0515A04.25; P0702C09.14; P0702C09.3; P0702E04.41; PH

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial glycoprotein	IPR003428	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G55600.1	Membrane fusion protein Use1 chr3:20620682-20622341 FORWARD LENGTH=240	48%
RefSeq	Arabidopsis thaliana	NP_567024.1	Membrane fusion protein Use1 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002324665.1	Ca2+ antiporter/cation exchanger [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SQE4

Fln msg:

Fln protein: MGSSKTEIKLKRLLASALNQENESKLIHYVATSRQLLAQLTGESSREGLPSISTSQAKEYAEKIDALAARIGSDSLLEASERPKVSDTNQIEDVPKREGKQIADEISFASTSSTPMIRHRHIHNNEKQSKGQVGVTAKAESPIKLDAQSQRHIEKHRKLQDNLTDEMVGLAHQLKETSLMMNQSLLDTDKILGSTERAVDHSLASTNSVNERAGKIYSQSFKTSCLSWLIIFVMSCMFLLVVLLIRIT*

Protein Length: 250

Fln nts: ATGGGGCGGAATCCTCGGATATGGACATCAACCCAAAGATCGTCATACGTCGTGACCCTGGCAGTCACGTGAAGAGGAAAATGGAAGTCGGTAAAGATTATTATTGTGCTGCCATTTGAGGATGGAGATGGTATGAAGAAGGAAGTCCAGGATCTCGCAAGGAAGAGACGGCAGAAATCTGTCCATTCTTCGTTTTTACAGTGAAGAAGTTACCTTAACCCACGCAGTCTGGTGAACGAAGCATCTGAATTTGGCCGTGAGAAAGGTAACCTTGGCACCCTTCAGCACAGTTGCAACTTGTTACAAACTTGTCAAAAATACTAACCCATTTCGGATTTATCGCCTACAGAGCTAGAA_-_ATGGGATCGAGTAAAACTGAAATAAAGTTAAAACGCTTGCTTGCTTCTGCTCTTAATCAGGAGAATGAATCTAAACTCATACATTATGTTGCAACATCGCGGCAGCTACTAGCACAATTGACTGGAGAGAGTTCACGAGAAGGCTTACCAAGTATATCAACATCACAAGCTAAGGAATATGCTGAGAAAATTGATGCTCTTGCAGCAAGAATAGGTTCCGATTCTCTGTTAGAAGCATCAGAGCGCCCAAAAGTGTCAGATACCAATCAAATTGAAGATGTGCCTAAACGGGAAGGGAAACAAATTGCTGATGAAATAAGCTTTGCTTCCACATCTTCAACTCCAATGATAAGACACAGACACATACATAATAACGAGAAGCAAAGTAAAGGTCAAGTGGGTGTGACTGCCAAGGCTGAGTCACCAATAAAACTAGATGCACAATCTCAAAGGCACATCGAAAAGCACAGGAAACTGCAGGATAACTTAACAGATGAAATGGTTGGTTTAGCTCATCAACTGAAGGAGACTAGTCTCATGATGAATCAATCACTGCTTGACACTGACAAGATTCTTGGTTCTACAGAACGGGCAGTGGACCACAGTTTAGCAAGTACAAATAGTGTAAATGAGCGAGCTGGGAAAATATATTCACAAAGCTTCAAAACCAGCTGCCTCTCTTGGCTTATCATATTTGTCATGAGTTGCATGTTCCTACTAGTTGTTTTGTTGATCCGCATAACTTGA___CAGGTTCAAGAAATGCATGCTTGTTTCTAGTTCCTAGCTTGTAGGTGGTCATATGTATATTATGATCCCGGTAACTCGTTTGAGTAGTTTCTTATAAATGTTCTAACTTTCTGGAAAGCAATTGTGTTATATATTAAATGCATGGAAAATTCTGAAAGGGCTTTTTTGTTACTAATAATTGATAATCATTTGGATAATATATAAATCTGGGTGCAGTGCTCTTAGGAAACATGGATAAAAGTTTCTACAACAAAATCTTTTCACGGTTGAATTGTTCTTTTGTGGAGGAATTGTCAATTATTATACAAATATAATAGATCATCAGAGTACCACACTCCTTTCAGTTTGTCC

Fln Alignment:

Contig9462___MGSSKTEIKLKRLLASALNQENESKLIHYVATSRQLLAQLTGESSREGLPSISTSQAKEYAEKIDALAARIGSDSL-LEASERPKVSDTNQIEDVPKREGKQIADEISFASTSSTPMIRHRHIHNNEKQSKGQVGVTAKAESPIKLDAQSQRHIEKHRKLQDNLTDEMVGLAHQLKETSLMMNQSLLDTDKILGSTERAVDHSLASTNSVNERAGKIYSQSFKTSCLSWLIIFVMSCMFLLVVLLIRIT
D7SQE4______________MGISRTEVNLRRLLAAAPQQQNQAKLIHYVATLREQLEQLTEERTLEGLPRVSKPKVNEYSEKIEAIASKIGSPSSNVQVSQEP-FSGTSGKEGTSKTEEED--------HMPLSPGLRRRFVPASKFEDRSHDTIKADASGPVKLDAAAQAHIEKHRKLQEDLTDEMVGLAKQLKQSSLLMSQSIQNTEKILDSTEKAVEHSLASTGHVNTRAMDIYSNSFKTTCFTWIMIFVMTCIFIMVVLLIRVT

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
48	83		16		0.994512
173	66		33		0.997452
445	9	18	72		0.999994
566	89		10		0.999919
707	83			16	0.994512
708		83		16	0.994512
709		83	16		0.994512
710			16	83	0.994512
712		16		83	0.994512
760		16		83	0.994512
797			20	80	0.995493
881		14	85		0.993533
882		14	85		0.993533
883	85	14			0.993533
885		85		14	0.993533
967	83		16		0.994512
1057		87		12	0.992554
1172		85		14	0.993533
1244		11	88		0.923564
1246	55	33			1.0
1285		42	57		1.0
1298		12		87	0.992554
1343		37		62	1.0
1370	12	87			0.992554
1376			14	85	0.993533
1377		14		85	0.993533
1382	14			85	0.993533
1385		20	40	40	1.0
1386		60	40		1.0
1387	80	20			0.995493
1389	20	40	40		1.0
1391	50		50		1.0
1393	50	50			1.0
1394	50			50	1.0
1395			75	25	0.996473
1396		50	25	25	0.995533
1397	50	50			1.0
1398	75		25		0.996473
1400	50		50		1.0
1401	25		75		0.996473
1402		25	75		0.996473
1403	25			75	0.996473
1404	25	50	25		0.995533
1405	50	25	25		0.995533
1407	25		50	25	0.995533
1408	75			25	0.996473
1409		75	25		0.996473
1410	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain