SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9461

Length: 1616 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9461

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[DZ] COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins	-	-	1.0e-27	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Predicted protein	-	-	0.0	-

Source	Gene names
Sma3	POPTRDRAFT_580781;

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G16040.1	Regulator of chromosome condensation (RCC1) family protein chr5:5240860-5243308 REVERSE LENGTH=396	75%
RefSeq	Arabidopsis thaliana	NP_197108.1	regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002329325.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAZ2

Fln msg:

Fln protein: MRVIHVSVAAYNLFHSSGGKWSVVSGMESDHTVLAWGSGEDGQLGVGNVEDKDWVCSIQALASKGKRVVSVVAGSRNSLAIYEDGQLFTWGWNQRGTLGHPPGSKTESTPTQVKALENVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDGSRVLRRDIAIPQRCAPQLRVRQVAAGGTHSVVLTHNGHVWTWGQPWPPGDIKQISTPVRVQGLENVQLIAVGAFHNLALLEEGKVWAWGNNEYGQLGTGDTQPRSQPVPVQGLSGLMVDIAAGGWHSTALTADAEVYAWGRGEHGRLGFGDDKSSKMLPQKVHLLAGQAIRQVSCGGTHSVARRADGRIFSYGRGDHGRLGYGRKVTTGHPMEVPIDIRPPKNAAENSGRWFVKLVACGGRHTLAIASWESEKL*

Protein Length: 417

Fln nts: ATGGGGCTGGACGACAGGGAAGAAAATGTTTAAAAGGAAGT_-_ATGCGCGTGATACATGTATCGGTAGCAGCATATAATTTGTTCCATTCGAGCGGTGGAAAGTGGAGTGTCGTTAGTGGAATGGAGTCAGATCACACAGTGCTCGCCTGGGGTTCTGGAGAGGATGGGCAGTTGGGAGTGGGGAATGTGGAGGATAAGGATTGGGTTTGCAGCATCCAAGCCCTGGCATCCAAAGGAAAGCGCGTCGTCTCTGTGGTGGCTGGCAGTAGAAACTCCCTTGCCATCTATGAAGACGGTCAGCTTTTTACGTGGGGATGGAACCAGCGGGGCACTTTGGGTCATCCTCCTGGAAGCAAGACTGAGAGCACTCCCACCCAGGTGAAGGCTCTGGAGAATGTAAAGATCGTTCAGGCAGCCATTGGGGGATGGCATTGTTTGGCAGTGGATGACCAAGGGCGGGCTTATGCTTGGGGTGGAAATGAGTATGGGCAATGTGGAGAAGAGCCAGAAAGGAAGGACGACGGCAGCAGAGTGTTAAGGCGGGATATAGCCATTCCTCAGCGCTGTGCTCCGCAACTTCGCGTTCGTCAGGTGGCAGCTGGAGGCACACACTCTGTAGTGCTTACACATAACGGGCATGTCTGGACATGGGGTCAACCGTGGCCTCCAGGGGACATAAAACAGATTTCTACTCCTGTTCGTGTTCAAGGCTTGGAAAATGTGCAGCTGATTGCTGTTGGTGCATTCCACAATCTGGCTCTTCTGGAGGAAGGGAAAGTCTGGGCGTGGGGAAACAATGAATATGGACAACTTGGCACAGGCGACACCCAGCCAAGATCACAGCCTGTTCCTGTCCAAGGACTTTCTGGTCTCATGGTTGATATTGCAGCAGGAGGATGGCATTCCACAGCATTAACAGCTGACGCAGAGGTATATGCATGGGGCAGAGGTGAGCATGGAAGATTAGGCTTTGGTGATGACAAAAGCAGCAAAATGTTACCACAAAAGGTGCATCTCCTTGCAGGTCAAGCCATTCGACAGGTGTCTTGTGGGGGAACACACTCAGTTGCACGCAGGGCTGATGGACGAATATTTTCTTATGGAAGAGGTGACCATGGTCGTCTTGGATATGGACGAAAAGTGACAACTGGGCACCCAATGGAAGTGCCAATAGACATACGACCCCCTAAAAATGCTGCCGAAAACAGTGGTCGCTGGTTTGTCAAGCTTGTTGCATGTGGAGGTCGACATACACTTGCTATTGCTTCATGGGAGTCAGAAAAGCTTTAA___ACGCTTAAATAAATGTTATGTAATGGGATTTGCTTCAAATACTCTTTTCCGGAAGAGTCTTTATTCCCAGTAACTGTAATAGTATTCGTTACACGGTAGTCAGGCTTTACTGTTATGCTGTTCTATAATGTCAACAAATTACAGGGATGGGTAGGATCTGTATTTAGTCAAATATTCCAATGAAAGACACATATTCGTAAGAACTTCAAAGTATTTGCTACGTGTATACATGCTTGTATTTAATTTTGGGTTCTGGGAAAATTAGATTCTGCTCTTCTGGACCTCTTTTGAGTTGAAGGATATTGTTTAGAAGATAAACCTAGTTCA

Fln Alignment:

Contig9461___MESDHTVLAWGSGEDGQLGVGNVEDKDWVCSIQALASKGKRVVSVVAGSRNSLAIYEDGQLFTWGWNQRGTLGHPPGSKTESTPTQVKALENVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDGSRVLRRDIAIPQRCAPQLRVRQVAAGGTHSVVLTHNGHVWTWGQPWPPGDIKQISTPVRVQGLENVQLIAVGAFHNLALLEEGKVWAWGNNEYGQLGTGDTQPRSQPVPVQGLSGL-MVDIAAGGWHSTALTADAEVYAWGRGEHGRLGFGDDKSSKMLPQKVHLLAGQAIRQVSCGGTHSVARRADGRIFSYGRGDHGRLGYGRKVTTGHPMEVPIDIRPPKNAAENSGRWFVKLVACGGRHTLAIASWESEKL
D5AAZ2______________MESDHAVLAWGSGEDGQLGVGNMEDKDWVCSIQALASHGKRVVSVVAGSRNSLAICEDGQLFTWGWNQRGTLGHPPESKTESTPTQVKALENVKIVQAAIGGWHCLAVDDQGQAYAWGGNEYGQCGEEPERKEDGSKVLRRDIAIPQRCAPQLRVRQVAAGGTHSVVLTHNGHVWTWGQPWPPGDIKQISTPVRVQGLENVQLIAVGAFHNLALLEEGEVWAWGNNEYGQLGTGDTQPRSQPVPVQGLSGLILADIAAGGWHSTALTTDAEVYAWGRGEHGRLGFGDDKSSKMVPQKVHLLAGETIAQVSCGGTHSVARTADGRIFSYGRADHGRLGYGRKVTTGHPMEVPIGIRPPKNAAENSGCWFVKLVACGGRHTLATASWESEEL

SNPs (tot: 7)

Position	A %	C %	T %	Probability
1330		87	12	0.992554
1340		80	20	0.999996
1494	12	87		0.992554
1495	12		87	0.992554
1496	37		62	1.0
1497	12	87		0.992554
1498	66	33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain