SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9454

Length: 1569 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9454

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Casein kinase II, regulatory subunit, alpha-helical	IPR016149	-	-
Sma3	Casein kinase II, regulatory subunit, beta-sheet	IPR016150	-	-
Sma3	Casein kinase II, regulatory subunit	IPR000704	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G44680.1	CKB4 casein kinase II beta subunit 4 chr2:18426898-18428166 REVERSE LENGTH=283	65%
RefSeq	Arabidopsis thaliana	NP_181996.1	casein kinase 2, beta polypeptide [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002301241.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPQ3

Fln msg: Separated hits, possible frame ERROR between 1141 and 1144,

Fln protein: MYKDRNTSTEGRTGASKSELGTLRDPSDRKRINDALDKHLHLEKSPPSTSKGANGRLSIPSTSAGRRGPGDSRNASGLDKTNYAEDVVNSDTDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSNDDILTEEQNELVESAAEMLYGLIHVRYILTSKGMNAMLEKYKNTDFGRCPRVYCSGQPCLPVGQSDIPRTSTVKIYCPKCEDVYYPRSKYQGxxTDGAYFGTTFPHLFLMTYAHIKPSRPMQSYVPKIFGFKIHKSAR*

Protein Length: 300

Fln nts: ATGGGGATTATATATATCACCGGGGGATGCCAGTGACGGGGGGGACATTCCCGGTCACCGGGGTAACGGGCTTTGTGAACGTGGCTCCCCTGTTTAGCCACCGTTTGTTAGCGTTGGGGGCGAGAGAAAGAGGAGGAGGGCATGGAGGAACCACCCAGATCTGCCTCTCTTCAACGCCAACACCAGCGCAGAAACCAAAACCAGGGGCAGAGAGTGTGAATGAGCAGGGTGGACGCGTGGGTGAATGAACAGCATTCGTTCCTTAATTCATTTCCATGGAATATCGGGTCGAAAATTAGCCACCCATATATGTTGATGGTGCTGAAGAATTTCAGGGTTAATTTATTCTAATTATTTAATCATCACAGTAGGTTGGGAGGAC_-_ATGTACAAGGACCGGAACACGTCAACGGAAGGCAGAACGGGGGCGTCAAAGTCAGAACTGGGCACTCTTCGGGATCCATCAGATCGGAAACGGATCAACGATGCACTGGATAAGCATCTGCATCTGGAGAAGTCGCCGCCCTCCACTTCAAAGGGAGCCAATGGCCGTTTGTCGATCCCATCGACATCGGCTGGGCGGCGTGGCCCGGGAGACTCACGGAATGCTAGCGGTTTAGACAAGACAAATTACGCTGAAGATGTGGTGAACTCTGATACAGATAGCGAAGAATCAGATGTCAGCGGTTCTGATGGAGATGACACATCCTGGATCTCTTGGTTCTGTAATTTAAGAGGCAATGAGTTCTTTTGTGAAGTTGATGATGAGTACATTCAGGATGATTTCAACCTTTGTGGACTTAGTAGCCAAGTTCCATACTATGATTATGCCCTTGACCTGATTTTGGATGTGGAGTCATCTAATGATGATATCTTAACCGAGGAACAGAATGAGTTGGTGGAGTCGGCTGCAGAAATGTTGTATGGATTGATCCATGTCCGTTATATTTTAACAAGCAAGGGAATGAATGCCATGCTAGAGAAGTACAAGAATACTGATTTTGGAAGATGCCCAAGAGTTTACTGTTCAGGGCAACCGTGTCTTCCAGTTGGCCAATCTGACATTCCCCGGACAAGCACGGTGAAGATTTACTGTCCAAAGTGTGAAGATGTTTACTATCCAAGATCGAAGTATCAAGGCAAxxxTACCGATGGAGCATATTTCGGAACCACATTTCCTCATCTATTTTTGATGACATATGCACACATAAAGCCATCCAGGCCAATGCAGAGCTATGTTCCAAAGATCTTTGGTTTTAAAATCCACAAAAGTGCACGATGA___ACCAAGTATAATGATGTAACTGTAGTTAGTTGTGACAAGCAGTAGCTCTTGCCCACGAGGGTTGTACTTCATATTATTTTTCATTAAATTGTTTAAGATATAAGTTAATGTGATTGTCACCTCCATTATGGCCATGTACAAAATGGTAAAATTATAGAGCGTTGGGATTTTGAGCTCCATCTAAATATTTTATCTTTAGGCTAAAGGATCTTTCCCTTTTTCAATATATTTTATTTTTATTTTTATTTATGATTACGATAATGCCATCCTATCACTTCCACTCTAGCCGTG

Fln Alignment:

Contig9454___MYKDRNTSTEGRTGASKSELGTLRDPSDRKRINDALDKHLHLEKSPPSTSKGANGRLSIPSTSAGRRGPGDSRNASGLDKTNYAXXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSNDDILTEEQNELVESAAEMLYGLIHVRYILTSKGMNAMLEKYKNTDFGRCPRVYCSGQPCLPVGQSDIPRTSTVKIYCPKCEDVYYPRSKYQGNxTDGAYFGTTFPHLFLMTYAHIKPSRPMQSYVPKIFGFKIHKSAR
B8LPQ3______________MYKDRSTATEGRTGASKSELGTLRDPSDRKRINDALDKHLHLEKSPPSTSKGLNGRLSIPSTSAGRRAPGDSRNASALDKTNYAEDVEDSDTDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSNDDILTEEQNELVESAAEMLYGLIHVRYILTSKGMNAMLEKYKNTDFGRCPRVYCSGQPCLPVGQSDIPRTSTVKIYCPKCEDVYYPRSKYQGNxTDGAYFGTTFPHLFLMTYAHIKPSRPMQSYVPKIFGFKIHKSAR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1460	9	90			0.999842

SSRs (tot: 1)

Start position	End position	Sequence	Length
1507	1526	TTTTAT TTTTAT TTTTAT TT	20

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain