SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9451

Length: 1076 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9451

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like protein kinase n=1 Tax=Elaeis guineensis RepID=Q84XU7_ELAGV	-	-	0.0	47%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	34%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	4.229e-06	-

Source	Gene names
Sma3	AT3G28040; AT5G01890; At3g28040; At3g56370; At5g01890; GSVIVT00029456001; GSVIVT00033546001; GSVIVT00037496001; IRK; LOC_Os03g21730; LRR-RLK; MpRLK27; Os03g0335500; OsI_04242; OsI_11455; OsJ_10748; P0485B12.19; P0703B11.28; PHYPADRAFT_145093; PHYPADRAFT_5

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G56370.1	Leucine-rich repeat protein kinase family protein chr3:20899403-20902390 REVERSE LENGTH=964	58%
RefSeq	Arabidopsis thaliana	NP_191196.1	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002325929.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Separated hits, possible frame ERROR between 892 and 904, Distance to subject end: 414 aas, your sequence is shorter than subject: 276 - 998

Fln protein: MGGLLHLAVLAVAVFLMVSLSQCGFELNDEVLGLIVFKADLHDPKSSLASWNEDDDSPCSWAGIVCSAKTGRVTEVVLDNLSLSGKIGRGLTRLTSLHRLSLANNNFSGDINISADLAQIPSLRIMNLNHNAFSGAIPAELFQQCDTLRVISLSHNALQGALPSSLSSRSSLTALNLSANHLSGSLPGSIWSLKNLRSLDLSHNSFSGAVPVGIxxxxxLREIHLNNNNFSGPLPADLGDCSLLRNLDFGHNLFSGGLPDSPKGLNFVSAMSFSTN

Protein Length: 277

Fln nts: TGTCTTGACCTTGGCTGTCACTCAGTCTTCCGTCCGATTGTGTACTTTGGAGAGTCGAATACCTTCTACGAGAAAAAACCGAGGTGCAGTAGAGAGACCTCCAAAATCATCTTTTGCACTTTTTCTTCTCCGTCACATTTCCCCCGTTCTTGCCTTAAAAATGCTAGTGCGGTGCTCTCTGTCTGTGTAATGCAAGTTTTTAGTTCGCTGAGAGCTGTAGAGTGATAGTAGTAGTAGCACAGCTTCG_-_ATGGGTGGCCTGCTGCATTTGGCTGTGTTGGCAGTTGCAGTTTTTCTGATGGTTTCTCTGAGCCAGTGTGGGTTTGAGCTGAACGATGAAGTGCTGGGACTCATAGTTTTCAAAGCAGATTTGCACGATCCAAAATCATCCCTGGCTTCTTGGAACGAGGACGATGACAGCCCATGTTCGTGGGCAGGTATCGTATGCAGCGCCAAAACAGGAAGAGTCACAGAAGTGGTGCTTGACAATCTCTCTTTATCTGGAAAGATCGGCAGAGGTCTCACTAGGCTCACGTCCCTTCACAGGCTCTCTCTTGCCAACAACAATTTCTCTGGCGATATCAATATCAGTGCAGATCTGGCCCAGATTCCCAGCCTCAGGATCATGAATTTGAATCACAATGCGTTCTCTGGTGCAATTCCTGCAGAGCTCTTTCAACAATGTGATACTCTCAGAGTCATTTCCCTTTCCCACAATGCGTTGCAAGGTGCCCTTCCTTCTAGCCTGAGCTCTCGTTCCAGTTTGACAGCATTGAACTTGTCTGCAAACCATCTGTCTGGGTCTTTGCCTGGGTCAATTTGGTCGCTGAAAAATCTAAGATCACTGGACTTGTCCCACAATTCCTTTTCAGGAGCTGTGCCTGTGGGTATTGGxxxxxxxxxxxxTCTTCGAGAGATTCATCTCAACAATAACAACTTTTCTGGCCCTTTGCCAGCTGATTTAGGTGACTGTTCTCTTTTGAGGAATTTGGATTTCGGCCATAACTTGTTTTCAGGTGGCCTGCCAGATTCCCCGAAAGGGTTGAATTTTGTTTCAGCTATGAGCTTTAGCACTAATTT

Fln Alignment:

Contig9451___SQCGFELNDEVLGLIV--FKADLHDPKSSLASWNEDDDSPCSWAGIVCSAKTGRVTEVVLDNLSLSGKIXXXXXXXXXXXXXXXANNNFSGDINISADLAQIPSLRIMNLNHNAFSGAIPAELFQQCDTLRVISLSHNALQGXXXXXXXXXXXXXXXXXXXXXXXGSLPGSIWSLKNLRSLDLSHNSFSGAVPVGIGxxxxLREIHLNNNNFSGPLPADLGDCSLLRNLDFGHNLFSGGLP
Q19AV8______________SSC-FAIRGSQEGLILQELKRGFDDPLEVFRNWNEHDNSPCNWTGITCDAGEKFVEEVDLSNTNIIGPFPSVVCRIDGLKKLPLADNYVNG--SIPADLRRCRKLGYLDLSQSLIVGGLP-DFISELSRLRHLDLSGNNLSGPIPPAFGQLLELQVLNLVFNLLNTTIPPFLGNLPNLLQFNLAYNPFTGTVPPELGxxxxLGEINLSKNQFSGSIPASVGTLPVLNYLDLSDNLLTGLIP

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
189			25	75	0.996473
272	12		87		0.992554
288		85		14	0.993533
484		16		83	0.994512
682	80			20	0.995493
686			20	80	0.995493
755	25			75	0.996473
757	25		75		0.996473
845	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
226	237	TAG TAG TAG TAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain