SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9401

Length: 1404 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene9401 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana] dbj\|BAB01853.1\| beta-1,3-glucanase [Arabidopsis thaliana] gb\|ABE65959.1\| glycosyl hydrolase family 17 protein [Arabidopsis thaliana] gb\|AEE76811.1\| O-Glycosyl hydrolases family 17 protein [Ara	-	-	0.0	44%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	54%
Sma3	Putative beta-1,3-glucanase	-	-	1.541e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	1.372e-35	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		1.372e-35	%

Source	Gene names
Sma3	131L1.7; 134P10.1; 311G2.1; A6; AT4g26830; At1g30080; At1g32860; At2g05790; At2g16230; At2g27500; At2g27500/F10A12.18; At3g07320; At3g07320/T1B9_1; At3g23770; At4g14080; At4g26830; At4g34480; At5g42100; At5g42720; At5g56590; B29; BoA6; BrA6; F10M23.170; F

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	plasmodesma	GO:0009506	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	licheninase activity	GO:0042972	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	cell communication	GO:0007154	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Histone H2A	IPR002119	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G23770.1	O-Glycosyl hydrolases family 17 protein chr3:8565556-8567196 FORWARD LENGTH=476	46%
RefSeq	Arabidopsis thaliana	NP_189019.1	O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002298669.1	predicted protein, partial [Populus trichocarpa]	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8QZC4

Fln msg:

Fln protein: MKGVGFFTMLLLLLFPLNSRAEIARRRSRVPSMGINYGRLGDDLPPPEQAVALIKSLGFGQVKIFDSDPNILNALANTSLRVVMAATNEELETLAASPAAAAEWLDQQVRPHLPAARIRMITVGNELLSHPEINQPRWPLLLPAMQNLQEALQAAGLSRQIKVSTCIAMDALNVSYPPSAARFRADIADSVLRPVLQLLSSTKSYIFLNAYPYLAWSDDSNDIPLDYALFGPGATVVADGDLQYGDLLDAQVDSFVAAMEDLGLPGVKIAISETGWPTAGGPDEVGASVSNAALYNGRLVKKMMSNPPKGTPRRPGVGIPTFIFALFNENQKPGPVTERNWGLLYPNASHVYPLNF*

Protein Length: 358

Fln nts: TA_-_ATGAAAGGAGTAGGGTTCTTCACAATGCTGCTGCTGCTGCTTTTTCCGCTGAACTCCAGAGCAGAAATTGCCAGGAGGAGAAGCAGGGTGCCAAGCATGGGGATAAACTATGGGCGCTTAGGGGACGACCTGCCTCCGCCGGAGCAAGCAGTGGCGCTGATAAAATCTCTGGGCTTTGGACAGGTCAAGATCTTTGACTCCGACCCGAACATTCTCAACGCTCTGGCCAACACCAGCCTCCGCGTGGTGATGGCAGCGACAAACGAAGAGCTCGAAACCCTAGCTGCCTCGCCCGCCGCCGCAGCAGAATGGCTGGACCAGCAAGTCCGGCCACACCTGCCCGCTGCCCGGATCCGCATGATCACGGTGGGCAACGAGCTCCTGAGCCACCCGGAGATCAACCAGCCGCGCTGGCCCCTGCTCCTCCCGGCAATGCAGAACCTCCAGGAAGCACTGCAGGCGGCGGGGCTGAGCCGCCAGATCAAAGTCTCCACCTGCATTGCCATGGACGCCCTCAACGTCTCATACCCGCCCTCCGCCGCAAGGTTCCGCGCCGACATCGCCGATTCCGTCCTCCGCCCGGTGCTCCAATTGTTGTCCTCCACCAAGTCCTACATTTTTCTCAACGCCTACCCCTACCTGGCGTGGTCCGACGACAGCAACGACATACCGCTGGACTACGCTCTCTTCGGCCCTGGAGCCACTGTCGTGGCCGACGGGGATCTGCAATACGGTGACCTGCTGGATGCCCAGGTAGACTCCTTCGTGGCCGCCATGGAGGACCTCGGGCTCCCGGGTGTGAAGATCGCGATCAGTGAGACAGGGTGGCCCACCGCTGGTGGCCCCGATGAGGTCGGGGCTTCCGTGAGCAACGCTGCTCTGTACAATGGAAGGCTAGTTAAGAAAATGATGTCGAATCCGCCCAAGGGTACCCCGAGAAGGCCCGGAGTTGGCATACCCACCTTCATTTTTGCTCTCTTCAATGAAAACCAGAAGCCTGGGCCTGTGACCGAGAGAAACTGGGGGCTTCTCTATCCCAATGCTTCTCACGTTTATCCCCTGAATTTTTGA___GCTCTGTAATTAGGTTCCCATACTCTGCCATAATCTGTAATTAGGTTCCCATAGGCACTAATTTCCAGTTTCCATTCATTCATTTCGATTATTTTTTGAAATCTTTTGAGTAAATCGTGATTGAATTTGTACGCCAGATTCTGTGGCCTAGGCAGTGAAATTGTATATCAAATTCTGTGGCTCAAGATTGTTATGCTTGGCCAGCTTGTTTCAAATGTAATAATGGATATCACTAGTGAAACTCCTCAACTTCAATTGTCATGAACTACATTGAACTTCCATGAAACTGAATAAAATCACTGGTAAGCAGTGTCATTCCTTTGTCGTGTGT

Fln Alignment:

Contig9401___MGINYGRLGDDLPPPEQAVALIKSLGFGQVKIFDSDPNILNALANTSLRVVMXXXXXXXXXXXXXXXXXXXXLDQQVRPHLPAARIRMITVGNELLSHPEINQPRWPLLLPAMQNLQEALQAAGLSRQIKVSTCIAMDALNVSYPPSAARFRADIADSVLRPVLQLLSSTKSYIFLNAYPYLAWSDDSNDIPLDYALFGPGATVVADGDLQYGDLLDAQVDSFVAAMEDLGLPGVKIAISETGWPTAGGPDEVGASVSNAALYNGRLVKKMMSNPPKGTPRRPGVGIPTFIFALFNENQKPGPVTERNWGLLYPNASHVYPLN
D8QZC4______________VGINYGRVANNLPSPSTAVSLIKSLGIDRVKIFDADSQVLAALANTSIKVSIMVRNQDIPGIASNASHADSWVAQNVVHHYPATHIATILVGNEILSDTSIKSSTWPALVPAMENIFASLQARNLTAKIKVSTPLASDALSTSYPPSAGAFHSEIATSVIQPLLAFLAKTGSSYHANVYPYFAYAGNSGQISLEYALFGSGSTVVQDGSLGYRDLLDAMVDSTFAAMERLGYGDIPLVISETGWPSAGDSGQVGASVDNAQLYNARLAKKVASS--QGTPKRPGVSIPTYIFALFNENEKSGAGTERNFGIFYPSGSRVYDLN

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
690	14		85		0.993533
707	66		33		1.0
716	33		66		1.0
740	16		83		0.994512
744		83		16	0.994512
811	87		12		0.992554
818		87		12	0.992554
819	87		12		0.992554
820	12	87			0.992554
823	12		87		0.992554
826		12	87		0.992554
827	12		87		0.992554
831	87			12	0.992554
833	12		87		0.992554
834		12	87		0.992554
835	87		12		0.992554
862	16	83			0.994512
864			83	16	0.994512
865		83	16		0.994512
866	16		83		0.994512
867		16	83		0.994512
870		20	80		0.995493
871		20	80		0.995493
872	20	80			0.995493
873	20		80		0.995493
878		25		75	0.996473
879	25		75		0.996473
880	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1362	1377	AGC AGC AGC AGC AGC A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain