SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9365

Length: 2363 nt

UniGene Fasta

>sp_v3.0_unigene9365
GATTGGCAAGGAGAGCAGAGGAATTTCTTCAGATTATCGTAGGCCGCCTCCGCTACTCAATTTTTGCAGCAACGCCAACGCCAACGCCAACGATCCAGCGGGGCCTTGGCACGATGAAACGCTGGTGCTCTCCACTACTCCGCACAAGAGGGTCAATCTTCACCAGGGAGCTGTGATGCATCCAGAGCACCGCCACGCCGAGGTAGCCACCAGGGCTGGAGGCTTTGCTCGGGCGCCTTCGTTGCTGTCGCGTTGCCCAACGATTAAGGGCAGGATCGACAGCTTCGCTTCACTGGGCGACGCCACGGCCACGGCCGCGGCGACCGCGATCTTGCAACACAGAGGACTTGGAGGTCGGAGGTTCAAGTCGCTGCAGGTCCTACTGCCGCCCTTTGTGGTCGTGTCGGTGCCCTGTTTCTGGTGGTACCTGAAGGTGCTGCGGGCGGAGAAACGGCTTGTGGATTCGCAGTCCGATAGCGACACGATCGTGGTCGTGGGCCTCTGGTTCGATTTCTTCGCAGCGCTGGTGTTTGTTACAGCCGTGGTCATATCACTCAAGATCGCCTTCCCGCGCCTCGCGCTAGCGCTGCCGTGGTCCTTGCGGCAGAGCTGGGGTTCCTTCGCGGTCGCGTGGTCGAAACCCCTCGCGACGCTCCTGTCAGACGATAAGGAAAAGAGGAGGAATAAATCTTTTTCCAGGGCTTTTTCCAGGCCCACGGTTACATGGACGATAGGGTCAAAGCCTAAGGTGGAGAGGAGCCTCAGCAAGGTGTCGACCGAAGGAGTCCAGGTCTACAAAAACGGGGATGTTTATGAGGGGGAATTTCATCAGGGCAAATGCTCCGGCAGCGGGGTGTATTATTATTATATGAGTGGGCGTTATGAGGGAGATTGGGTCGATGGGAAGTATGATGGTTATGGTGTGGAAACCTGGGCGAAAGGAAGCCGCTACAGGGGGCAGTATAGGCAAGGCATGAGGACAGTGGTTATGGTGTTTACAGGTTTTACACTGGAGATGTCTATACGGGGGAGTGGTCGAATGGGCAGAGCCATGGCTACGGCGTCCACACTTGTGAAGATGGCAGTAGGTATGTTGGGGAGTTTAAGTGGGGCGTCAAGCATGGCCTCGGATACTACCACTTCCGAAATGGTGATACCTATGCCGGAGAGTATTTTTCAGATAAAATGCATGGGTTTGGTGTCTACCATTTTGCCAATGGTCACCGTTATGAGGGTGCATGGCACGAGGGAAGAAAGCAAGGTCTGGGAATGTATATATTTAGAAATGGTGAAAGACAGTCTGGCCACTGGCACCATGGTGTTTTAGAGACTCCTAGTACACAGAATTCTCAGCCAAGATCTCCCATGGCTGTGAACCATTCAAAAGTCTTGAATGCAGTACAGGAAGCAAGGCGAGCAGCAGAAAGGGCATTTGAAACTCCTCCAGTTGATCAAAGAGTAAATAAGGCTATATCTGGTGCCAACAGAGCAGCTAATGCGGCAAGGATTGCTGCAGTTAAAGCTGTTCAGAAGAGGATGCATGTCAATGTGCCAATTCCAGACGTCTAGGGGGCTGACCTTCTAGTACCTTATCTCACAACCTCAATTGCTGGTCGGAATTTCTACTGAGTTGTACCTTTTGTGGCTGCTAAAATCTCATAAGATCAATTGATACACGAAGTCATCATTATGATAGCCAGATATGGTGGGTGTATTTAATGGTTTGTGCCTCGTTTTAAATGGAAAAAAAATAAGGGCAGCAGCAGCTATAATCCTCACTGATCCCAGTTTAGAGAGAACTTGCTTCTGAAGCTGACACTTCTTATCTGGGAGATCTTCATCATGAATGTATTTTTTAGCTGAAGGAGGAAACCTGTGCTAAGAAATATATTTTCATTCAGTTGTAAATAGAGTGAATCTCAGGATGAAGCCATGCCCCTGAGGAGTATTGTATAGTATTTGCGTGCCTTTTTGAGATTGCCTTTTTCATGCGGTGTTCAAGTAAGGATCTTTTACTGGTGGCTAAGCAAAAAGCTTGGCACCTCGTTAGCAGTGGTTACGGAGGCAAGTTCAGATATGTATAAAAGAGAAATAGTATGTGAATATGGATTGGATTACCATTAAGTACAATAAGCATGTATTTTATGAAATCTCAAGTACTTTATTAAGTTACGGGGATGTGGAATCTCGAACTGCAAACCTGATGATTTCACATATTTCATTATAGATTAGTGAGCGTGCTACTTGTGTTCTTTGCAGTTTAGTTGCCTCATTGAAGTTGGTTTAAAAACCAGGCATTTAGGCAAATATTCCCAGTGGGATGGATTGTGCATTTGAATTTTTTGAATAGATGGACTTCGACC

Ace file of the UniGene sp_v3.0_unigene9365

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MORN domain containing protein	-	-	4.0e-05	56%
FL-Next	sp=Phosphatidylinositol 4-phosphate 5-kinase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	28%
Sma3	ICE-like protease p20 domain containing protein, expressed	-	-	4.565e-12	-

Source	Gene names
Sma3	AT4g17080; At1g21920; At1g77660; At2g35170; GSVIVT00015357001; GSVIVT00015870001; GSVIVT00019031001; LOC_Os10g41534; OSJNBa0027P10.22; Os08g0469700; Os09g0453900; Os10g0565000; OsI_29549; OsI_31624; OsJ_27632; OsJ_29607; P0488D02.28-1; PHYPADRAFT_133151;

Source	GOs	Term	Type	Identity
Sma3	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Insect cuticle protein	IPR000618	-	-
Sma3	MORN motif	IPR003409	-	-
Sma3	Peptidase C14, caspase catalytic	IPR011600	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17080.1	Histone H3 K4-specific methyltransferase SET7/9 family protein chr4:9601570-9603815 FORWARD LENGTH=513	72%
RefSeq	Arabidopsis thaliana	NP_193441.5	Histone H3 K4-specific methyltransferase SET7/9 family protein [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002301242.1	predicted protein, partial [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9SLG9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 181 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 384 - 772

Fln protein: MHPEHRHAEVATRAGGFARAPSLLSRCPTIKGRIDSFASLGDATATAAATAILQHRGLGGRRFKSLQVLLPPFVVVSVPCFWWYLKVLRAEKRLVDSQSDSDTIVVVGLWFDFFAALVFVTAVVISLKIAFPRLALALPWSLRQSWGSFAVAWSKPLATLLSDDKEKRRNKSFSRAFSRPTVTWTIGSKPKVERSLSKVSTEGVQVYKNGDVYEGEFHQGKCSGSGVYYYYMSGRYEGDWVDGKYDGYGVETWAKGSRYRGQYRQGMRTVVMVFTGFTLEMSIRGSGRMGRAMATASTLVKMAVGMLGSLSGASSMASDTTTSEMVIPMPESIFQIKCMGLVSTILPMVTVMRVHGTREESKVWECIYLEMVKDSLATGTMVF*

Protein Length: 385

Fln nts: GATTGGCAAGGAGAGCAGAGGAATTTCTTCAGATTATCGTAGGCCGCCTCCGCTACTCAATTTTTGCAGCAACGCCAACGCCAACGCCAACGATCCAGCGGGGCCTTGGCACGATGAAACGCTGGTGCTCTCCACTACTCCGCACAAGAGGGTCAATCTTCACCAGGGAGCTGTG_-_ATGCATCCAGAGCACCGCCACGCCGAGGTAGCCACCAGGGCTGGAGGCTTTGCTCGGGCGCCTTCGTTGCTGTCGCGTTGCCCAACGATTAAGGGCAGGATCGACAGCTTCGCTTCACTGGGCGACGCCACGGCCACGGCCGCGGCGACCGCGATCTTGCAACACAGAGGACTTGGAGGTCGGAGGTTCAAGTCGCTGCAGGTCCTACTGCCGCCCTTTGTGGTCGTGTCGGTGCCCTGTTTCTGGTGGTACCTGAAGGTGCTGCGGGCGGAGAAACGGCTTGTGGATTCGCAGTCCGATAGCGACACGATCGTGGTCGTGGGCCTCTGGTTCGATTTCTTCGCAGCGCTGGTGTTTGTTACAGCCGTGGTCATATCACTCAAGATCGCCTTCCCGCGCCTCGCGCTAGCGCTGCCGTGGTCCTTGCGGCAGAGCTGGGGTTCCTTCGCGGTCGCGTGGTCGAAACCCCTCGCGACGCTCCTGTCAGACGATAAGGAAAAGAGGAGGAATAAATCTTTTTCCAGGGCTTTTTCCAGGCCCACGGTTACATGGACGATAGGGTCAAAGCCTAAGGTGGAGAGGAGCCTCAGCAAGGTGTCGACCGAAGGAGTCCAGGTCTACAAAAACGGGGATGTTTATGAGGGGGAATTTCATCAGGGCAAATGCTCCGGCAGCGGGGTGTATTATTATTATATGAGTGGGCGTTATGAGGGAGATTGGGTCGATGGGAAGTATGATGGTTATGGTGTGGAAACCTGGGCGAAAGGAAGCCGCTACAGGGGGCAGTATAGGCAAGGCATGAGGACAGTGGTTATGGTGTTTACAGGTTTTACACTGGAGATGTCTATACGGGGGAGTGGTCGAATGGGCAGAGCCATGGCTACGGCGTCCACACTTGTGAAGATGGCAGTAGGTATGTTGGGGAGTTTAAGTGGGGCGTCAAGCATGGCCTCGGATACTACCACTTCCGAAATGGTGATACCTATGCCGGAGAGTATTTTTCAGATAAAATGCATGGGTTTGGTGTCTACCATTTTGCCAATGGTCACCGTTATGAGGGTGCATGGCACGAGGGAAGAAAGCAAGGTCTGGGAATGTATATATTTAGAAATGGTGAAAGACAGTCTGGCCACTGGCACCATGGTGTTTTAGAGACTCCTAGTACACAGAATTCTCAGCCAAGATCTCCCATGGCTGTGAACCATTCAAAAGTCTTGAATGCAGTACAGGAAGCAAGGCGAGCAGCAGAAAGGGCATTTGAAACTCCTCCAGTTGATCAAAGAGTAAATAAGGCTATATCTGGTGCCAACAGAGCAGCTAATGCGGCAAGGATTGCTGCAGTTAAAGCTGTTCAGAAGAGGATGCATGTCAATGTGCCAATTCCAGACGTCTAGGGGGCTGACCTTCTAGTACCTTATCTCACAACCTCAATTGCTGGTCGGAATTTCTACTGAGTTGTACCTTTTGTGGCTGCTAAAATCTCATAAGATCAATTGATACACGAAGTCATCATTATGATAGCCAGATATGGTGGGTGTATTTAATGGTTTGTGCCTCGTTTTAAATGGAAAAAAAATAAGGGCAGCAGCAGCTATAATCCTCACTGATCCCAGTTTAGAGAGAACTTGCTTCTGAAGCTGACACTTCTTATCTGGGAGATCTTCATCATGAATGTATTTTTTAGCTGAAGGAGGAAACCTGTGCTAAGAAATATATTTTCATTCAGTTGTAAATAGAGTGAATCTCAGGATGAAGCCATGCCCCTGAGGAGTATTGTATAGTATTTGCGTGCCTTTTTGAGATTGCCTTTTTCATGCGGTGTTCAAGTAAGGATCTTTTACTGGTGGCTAAGCAAAAAGCTTGGCACCTCGTTAGCAGTGGTTACGGAGGCAAGTTCAGATATGTATAAAAGAGAAATAGTATGTGAATATGGATTGGATTACCATTAAGTACAATAAGCATGTATTTTATGAAATCTCAAGTACTTTATTAAGTTACGGGGATGTGGAATCTCGAACTGCAAACCTGATGATTTCACATATTTCATTATAGATTAGTGAGCGTGCTACTTGTGTTCTTTGCAGTTTAGTTGCCTCATTGAAGTTGGTTTAAAAACCAGGCATTTAGGCAAATATTCCCAGTGGGATGGATTGTGCATTTGAATTTTTTGAATAGATGGACTTCGACC

Fln Alignment:

Contig9365___EKRRNKSFSRAFSRP-----TVTWTIGSKPKVERSLSKVSTEGVQVYKNGDVYEGEFHQGKCXXXXXXXXXXXXXXEGDWVDGKYDGYGVETWAKGSRYRGQYRQGMRTVVMVFTG
Q9SLG9______________KKRANSVFGTVSVAPHTDNDTTTDDNDDETTTNRSSLEEFYHAERVLPNGDYYTGQWYDSFPHGHGKYLWTDGCMYIGDWYNGKTMGNGKFGWPSGATYEGEFKSGYMDGIGTYTG

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
1316		16		83	0.994512
1333		83		16	0.994512
1341	85		14		0.993533
1342		85	14		0.993533
1343	85		14		0.993533
1477		80	20		0.995493
1478			20	80	0.995493
1493	60		40		1.0
1502	20		80		0.995493
1506	83			16	0.994512
1619	16		83		0.994512
1665	80		20		0.995493
1811		66		33	0.997452
1842	33			66	0.997452
1907		16		83	0.994512
1910	83		16		0.994512
1912	83	16			0.994512
1914	83			16	0.994512
1916	83		16		0.994512
1917		16	83		0.994512
1920	83			16	0.994512
1921	83	16			0.994512
1922	16			83	0.994512
2030	87	12			1.0
2032		87		12	1.0
2033	87	12			1.0
2034	87		12		1.0
2035	87			12	1.0
2036	87		12		1.0
2038		12	87		1.0
2045	87			12	1.0
2046		89	10		1.0
2047		85	3		1.0
2050	10		89		1.0
2051		10		89	1.0
2053	89	10			1.0
2054	10	3	85		1.0
2065	17	3	78		1.0
2335			66	33	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
70	92	CAACGC CAACGC CAACGC CAACG	23
857	868	TAT TAT TAT TAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain