SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9346

Length: 1449 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9346

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin n=6 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Sma3	Expansin	-	-	-

Source	Gene names
Sma3	AT1G69530; At1g26770; At1g69530; At2g28950; At2g37640; At2g39700; At2g40610; At3g29030; At3g55500; At5g02260; At5g05290; At5g56320; CDK3; CDK4; CDK5; CDK6; CDK7; Cs-EXPA1; EXP; EXP03; EXP1; EXP10; EXP11; EXP12; EXP13; EXP14; EXP15; EXP16; EXP18; EXP2; EXP

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	syncytium formation	GO:0006949	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	plant-type cell wall loosening	GO:0009828	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G26770.2	ATEXPA10, AT-EXP10, ATEXP10, ATHEXP ALPHA 1.1, EXP10, EXPA10 expansin A10 chr1:9259775-9260792 FORWARD LENGTH=259	75%
RefSeq	Arabidopsis thaliana	NP_177112.1	expansin A1 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002315043.1	hypothetical protein POPTRDRAFT_659295 [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXU9

Fln msg:

Fln protein: MGALGFLVVGLLLVTTRATMASSWISAHATFYGGSDASGTMSGACGYGNLYSQGYGANTAALSTALFNDGLSCGACFQVMCNDDPQWCLRGSVVVTATNFCPPGGWCNPPLRHFDLSQPVFLKIAKNKAGVVPILYRRVPCHKKGGIRFTINGHSYFNLVLISNVGGAGDVHGVWIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRSVTSYNVASVNWQFGQTFSGAQFH*

Protein Length: 241

Fln nts: ATGGGGACTCCCCGCCTCCTCTTCCTACTTAATTCCTTCAACCCCACTCCGACTCATCCCATCTGCTTCTATTTCTCAGAAAATCTCTGTGCATGATTGAGTTTTGATTGATTGATTGTATCGTCACTTACCTATAATTTCTGGAGGGTCAGTCACTGCTGTTGATATGCCTTTCATGATTGGATTGCATTGTATGGTTTGGAATTCTCACCCGAATCAATAGCCTTACTGGACCGCTGAATATGGGTATGTCTTTCTGCTGCAGGAA_-_ATGGGTGCCCTGGGATTTTTGGTGGTGGGTTTGTTGTTAGTAACCACAAGAGCTACAATGGCTTCAAGCTGGATAAGTGCGCATGCAACTTTTTATGGCGGAAGTGATGCCTCTGGCACAATGAGTGGAGCTTGTGGGTATGGAAATCTATACAGCCAAGGCTATGGCGCCAACACAGCAGCTCTGAGCACGGCCCTTTTCAACGATGGCCTCAGCTGTGGAGCCTGCTTTCAAGTCATGTGTAATGACGACCCACAATGGTGTCTAAGAGGATCTGTTGTGGTCACTGCTACTAACTTCTGTCCACCTGGGGGATGGTGCAATCCTCCTTTGCGGCACTTTGATCTCTCACAGCCTGTGTTTTTGAAGATTGCTAAGAACAAAGCTGGAGTAGTACCCATCTTGTACAGACGCGTCCCTTGTCACAAAAAGGGAGGAATCCGGTTTACAATCAATGGCCATTCATACTTCAACTTAGTGCTCATCAGCAACGTGGGAGGAGCAGGGGACGTCCATGGCGTTTGGATAAAAGGGTCAAGGACTGGTTGGCAACCAATGTCACGCAACTGGGGACAAAATTGGCAAAGCAACTCCTACCTCAATGGCCAGAGCCTCTCCTTCAAGGTCACCACCAGCGATGGCAGAAGTGTAACTTCGTACAATGTAGCTTCTGTAAATTGGCAGTTCGGTCAGACTTTCAGTGGAGCTCAGTTCCATTAA___GGAATATAGTTCCTCTGCGGATGCGCTGATGCTCTGGACTTCTGAACTTATTAACTCTTGTGTATTGTCATTGATGTTGAATGCTGAGGTGGGTTCCAAGTCCAAGATCCACCCGCTTCATAGAATAAGTATTTTTTATTATCATGATCAGTGTGTATTGCCGACGCTGGCGTCTTCTACCTTAAGTAAACTTACTACCCACTAAGAGTGCTTCCATATAGCTTCAAATCTGAAGCTGATGTGTTCAGAGGATACGTGATACGGATTGTCCTCTGGGTATCCATGTAGCTTTATATGAGGATGACGCGTTATTATCATGTATTGTCATGTGCATCCATGTGGATGAGGATGATATATGGATAAATATTATCCTTGGTATGTAATTGACTTATAACATCTATCTATATATTGAAGTTGGATCTTGGTTATATTTCAATTACATACAAGGATAATATTTATCC

Fln Alignment:

Contig9346___TRATMASSWISAHATFYGGSDASGTMSGACGYGNLYSQGYGANTAALSTALFNDGLSCGACFQVMCNDDPQWCLRGSVVVTATNFCPP--------GGWCNPPLRHFDLSQPVFLKIAKNKAGVVPILYRRVPCHKKGGIRFTINGHSYFNLVLISNVGGAGDVHGVWIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRSVTSYNVASVNWQFGQTFSGAQ
A9NXU9______________TMARVAHGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGACYAIRCNDDPQWCLPGAIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSEPVFQHIAKYRAGIVPVMYQRVPCHRSGGIRFTVNGHSYFNLVLITNVGGAGDIHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQGLSFKVTTSDGRTVTSYNVAPSNWQFGQTFAGAQ

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
299		33		66	0.997452
313		83		16	0.994512
457		85		14	0.993533
549			12	87	0.992554
1395		14		85	0.993533
1416		16		66	0.988813
1421		25		75	0.996473
1422			25	75	0.996473
1423	25			75	0.996473
1424	33	66			0.997452
1425	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
104	118	TTGA TTGA TTGA TTG	15

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain