SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9319

Length: 2720 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene9319
CGTCGTGACCTTGGCTGTCACTCAACTTTCCAATGCAAAAGTCTCTCTTACACTCAACCCCAAAGTAGACGTCTTTGACAAAATCCGGAGCTTCACAAAGCCAAGGTGCTAGGTTTGAGTTGTGCTCCTGAATCGTCACGGATTCCTTTAAGTTCCAAACGGCACAGGAACAAAAATCGCAGGTGTTTTCTTTGGCGAGGCCCCCAGATCGTCTCAGGCTGCGTTATCCAGTCTGCTGTGGTAGTTTTTTCGCGCTCTGGGATTTGGGGTTTGGGGAAATCCCCTATATGTTTCTAATAGCCCAGCAGTTATCCATAACGTTGGCGGGTTCGTGGTGTTCTGAGTTCTACGGGGTTTTATCATCATGGCGACCTTTGCCAAGCCGGAAAACGCTCTCAAGCGGGCCGAAGAGTTGATGAATGTTGGCCAGAAGCAGGCAGCATTACAGGCACTTCATGACTTGATAACATCAAAGCGGTACAGAGCATGGCAAAAGACACTGGAAAAGATAATGTTCAAATATGTGGAACTTTGTGTGGATATGAGGCGTGGCAGGTTTGCGAAGGATGGACTTATTCAGTATCGCATTGTATGCCAGCAAGTGAATGTTAGTTCCTTGGAGGAGGTTATCAAGTATTTCCTCCAGCTCTCTAGTGAGAAGGCTGAACAGGCCCAAGCTCAAGCACAGGCATCTGAGATCGCTCTTGATGTTGAGGACTTAGAGGCAGAGAAGAGGCCAGAGGACTTGATGCTCAGTTATGTCAGTGGAGAGAAAGGCAAAGACAGGTCTGATCGGGAACTAGTTACCCCATGGTTTAAGTTTCTTTGGGAAACGTATAGGACCGTACTTGAAATACTTCGTAACAATTCAAAGCTGGAAGCACTATATGCGATGACTGCACATCGAGCATTTCAGTTTTGTTTGCAATATAAACGGACAACAGAGTTCCGTCGGCTTTGTGAAATAATACGCAACCATCTTGTGAATTTGAATAAGTACAGGGATCAAAGAGACAGGCCTGACCTGAATCTCCCTGAGAGTTTGCATCTTTACCTTGATACAAGGTTTGAGCAACTGAAGGCTGCAACTGAGCTTGAACTCTGGCAGGAAGCTTTTCGCTCTATAGAAGATATTCATGGCCTTATGTGCATGGTCAAGAAGACTCCTAAACCTCAAATGATGGCAATTTACTATTCAAAGTTAACAAAGATATTTTGGATATCAGAAAGTCATTTGTATCATGCCTATGCATGGTACAAGCTCTATATCCTCCAGAAAAGCTACAATAAAAACTTAGCACAGAAGGATTTGCAGCTAATGGCATCATCGGTATTGTTGGCTGCCATTTCCATTATGCCCTATGATCACAAACATGGGGCTCACCATTTTGAACTGGAGAATGAGAAGGAAAGGAGTTCAAGAATGGCCAGTCTTTTGGGATTTAGTTTGGATTCTAAAAAGGACACCAGAGAAGTGTTGTCACGCTCAGCACTTCTATCTGAATTGGTTTCCAAAGGTGTCATGACATATGTTCCGCAAGAAGTGAAAGATTTGTATTATCTGTTGGAAAATGATTTCCACCCTTTAGATCTTGCTGATAAAGTTCAACCACTGCTAGGCAGGCTCTCTAAGCTTAGTGACAAACTGTCTTCAGCTTCTCCGGTCCCAGAAGTGCAATTGGAGCAATACATTCCTGCTTTAGAAAGGCTAACTACTTTGAGAGTGTTACAGCAGGTATCACAAGTGTATCAAACAATGAAAATCACAGTTCTGTCAAGGATGATACCATTTTCTGATTTTTCTGTTATAGAGAGGCTTAGTGTGGATGCCGTGAAGTACAATTTCGTACAGTTGAAGATTGACCATTTAAAAGGCATTGTACAGTTTGGCAGTCAGGACCTTGAATCAGACAAGATTCGTAATCATTTGGCTATTCTTGCGAAACGGTTAAACAAGGCTAGAAGTCTTATACAACTGCCTTCTGTTGAGAAAGTACCCAAAACAACTCAACACTTCCCAGTATTGCTTGAGGTCATAGAGAAAGAGCATAGAAAACTTCTTGCTCGCAAAGTCTTGATTGAGAGGCGCAAGGAGGAGCAAGAACGACAGATGCTTGAAATGGAACGAGAGGAAGAGTCCAAGAGATTGAAGCAGCAAAGAATAACAGAAGAAGCTGAACAGAAAAGACTTGCATCTGAGTATACAAAGAGAGAAGAGCAGAGAATTCGGAGGGAGATTGAAGAAAAGGAACTGGAAGAAGCTGTACTTTTGCTTCAAGAAGCTGAGAGAAGGAAAGGGAAAAAGGGCAAAAAGACTGCCATTGAAGGGGAAAAGGTCACAAAGCAGACCCTCATTGAGCAGGCGCTGAATGAGCAGCTTAAGGAAAGGCAGGAAATGGAACGTAAACTCCAGAAACTAGCAAAAACTATGGATTATTTGGAAAGGGCCAAAAGAGAAGAGGAAACCCATCTTATTGAAGCAGCCTATAGAAAACATTTGGTAGATGATGAAATATTCTTTGAACAGCAACAACAGCAAGCAATTGAACAAAGCAGACAACAACATGCTGCAGATCTCGTGGAGAAGAATAGGCTTATCCGAATGCTAGATGATAAGAATATCTTTCAGAATCAAGTAGTTGGCCGTCGCCAAGGAGAGTTTGAGAGACTGAAGCGAGAAGGAGAAGAGAGACTTGCAGAGCTCCATGCAATTCGAAAAC

Ace file of the UniGene sp_v3.0_unigene9319 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translation initiation factor eIF-3 subunit 10 [Arabidopsis thaliana] sp\|Q9LD55.1\|EIF3A_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 large subunit; AltName:	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	eIF3a	-	-	1.157e-13	-

Source	Gene names
Sma3	At4g11420; CHLREDRAFT_187852; EIF3A; F25E4.40; GSVIVT00022664001; IF3A; MICPUCDRAFT_46246; MICPUN_94701; OSTLU_12762; Os01g0120800; OsI_00169; OsJ_00175; Ot07g04200; P0684C01.5-1; P0684C01.5-2; PHYPADRAFT_113179; PHYPADRAFT_211874; PHYPADRAFT_215083; POPT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	translational initiation	GO:0006413	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G11420.1	EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 eukaryotic translation initiation factor 3A chr4:6947834-6952053 REVERSE LENGTH=987	70%
RefSeq	Arabidopsis thaliana	NP_192881.1	translation initiation factor eIF-3 subunit 10 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002330181.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPG3

Fln msg: STOP codon was not found. Distance to subject end: 399 aas, your sequence is longer than subject: 785 - 386

Fln protein: MATFAKPENALKRAEELMNVGQKQAALQALHDLITSKRYRAWQKTLEKIMFKYVELCVDMRRGRFAKDGLIQYRIVCQQVNVSSLEEVIKYFLQLSSEKAEQAQAQAQASEIALDVEDLEAEKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCLQYKRTTEFRRLCEIIRNHLVNLNKYRDQRDRPDLNLPESLHLYLDTRFEQLKAATELELWQEAFRSIEDIHGLMCMVKKTPKPQMMAIYYSKLTKIFWISESHLYHAYAWYKLYILQKSYNKNLAQKDLQLMASSVLLAAISIMPYDHKHGAHHFELENEKERSSRMASLLGFSLDSKKDTREVLSRSALLSELVSKGVMTYVPQEVKDLYYLLENDFHPLDLADKVQPLLGRLSKLSDKLSSASPVPEVQLEQYIPALERLTTLRVLQQVSQVYQTMKITVLSRMIPFSDFSVIERLSVDAVKYNFVQLKIDHLKGIVQFGSQDLESDKIRNHLAILAKRLNKARSLIQLPSVEKVPKTTQHFPVLLEVIEKEHRKLLARKVLIERRKEEQERQMLEMEREEESKRLKQQRITEEAEQKRLASEYTKREEQRIRREIEEKELEEAVLLLQEAERRKGKKGKKTAIEGEKVTKQTLIEQALNEQLKERQEMERKLQKLAKTMDYLERAKREEETHLIEAAYRKHLVDDEIFFEQQQQQAIEQSRQQHAADLVEKNRLIRMLDDKNIFQNQVVGRRQGEFERLKREGEERLAELHAIRK

Protein Length: 786

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTCCAATGCAAAAGTCTCTCTTACACTCAACCCCAAAGTAGACGTCTTTGACAAAATCCGGAGCTTCACAAAGCCAAGGTGCTAGGTTTGAGTTGTGCTCCTGAATCGTCACGGATTCCTTTAAGTTCCAAACGGCACAGGAACAAAAATCGCAGGTGTTTTCTTTGGCGAGGCCCCCAGATCGTCTCAGGCTGCGTTATCCAGTCTGCTGTGGTAGTTTTTTCGCGCTCTGGGATTTGGGGTTTGGGGAAATCCCCTATATGTTTCTAATAGCCCAGCAGTTATCCATAACGTTGGCGGGTTCGTGGTGTTCTGAGTTCTACGGGGTTTTATCATC_-_ATGGCGACCTTTGCCAAGCCGGAAAACGCTCTCAAGCGGGCCGAAGAGTTGATGAATGTTGGCCAGAAGCAGGCAGCATTACAGGCACTTCATGACTTGATAACATCAAAGCGGTACAGAGCATGGCAAAAGACACTGGAAAAGATAATGTTCAAATATGTGGAACTTTGTGTGGATATGAGGCGTGGCAGGTTTGCGAAGGATGGACTTATTCAGTATCGCATTGTATGCCAGCAAGTGAATGTTAGTTCCTTGGAGGAGGTTATCAAGTATTTCCTCCAGCTCTCTAGTGAGAAGGCTGAACAGGCCCAAGCTCAAGCACAGGCATCTGAGATCGCTCTTGATGTTGAGGACTTAGAGGCAGAGAAGAGGCCAGAGGACTTGATGCTCAGTTATGTCAGTGGAGAGAAAGGCAAAGACAGGTCTGATCGGGAACTAGTTACCCCATGGTTTAAGTTTCTTTGGGAAACGTATAGGACCGTACTTGAAATACTTCGTAACAATTCAAAGCTGGAAGCACTATATGCGATGACTGCACATCGAGCATTTCAGTTTTGTTTGCAATATAAACGGACAACAGAGTTCCGTCGGCTTTGTGAAATAATACGCAACCATCTTGTGAATTTGAATAAGTACAGGGATCAAAGAGACAGGCCTGACCTGAATCTCCCTGAGAGTTTGCATCTTTACCTTGATACAAGGTTTGAGCAACTGAAGGCTGCAACTGAGCTTGAACTCTGGCAGGAAGCTTTTCGCTCTATAGAAGATATTCATGGCCTTATGTGCATGGTCAAGAAGACTCCTAAACCTCAAATGATGGCAATTTACTATTCAAAGTTAACAAAGATATTTTGGATATCAGAAAGTCATTTGTATCATGCCTATGCATGGTACAAGCTCTATATCCTCCAGAAAAGCTACAATAAAAACTTAGCACAGAAGGATTTGCAGCTAATGGCATCATCGGTATTGTTGGCTGCCATTTCCATTATGCCCTATGATCACAAACATGGGGCTCACCATTTTGAACTGGAGAATGAGAAGGAAAGGAGTTCAAGAATGGCCAGTCTTTTGGGATTTAGTTTGGATTCTAAAAAGGACACCAGAGAAGTGTTGTCACGCTCAGCACTTCTATCTGAATTGGTTTCCAAAGGTGTCATGACATATGTTCCGCAAGAAGTGAAAGATTTGTATTATCTGTTGGAAAATGATTTCCACCCTTTAGATCTTGCTGATAAAGTTCAACCACTGCTAGGCAGGCTCTCTAAGCTTAGTGACAAACTGTCTTCAGCTTCTCCGGTCCCAGAAGTGCAATTGGAGCAATACATTCCTGCTTTAGAAAGGCTAACTACTTTGAGAGTGTTACAGCAGGTATCACAAGTGTATCAAACAATGAAAATCACAGTTCTGTCAAGGATGATACCATTTTCTGATTTTTCTGTTATAGAGAGGCTTAGTGTGGATGCCGTGAAGTACAATTTCGTACAGTTGAAGATTGACCATTTAAAAGGCATTGTACAGTTTGGCAGTCAGGACCTTGAATCAGACAAGATTCGTAATCATTTGGCTATTCTTGCGAAACGGTTAAACAAGGCTAGAAGTCTTATACAACTGCCTTCTGTTGAGAAAGTACCCAAAACAACTCAACACTTCCCAGTATTGCTTGAGGTCATAGAGAAAGAGCATAGAAAACTTCTTGCTCGCAAAGTCTTGATTGAGAGGCGCAAGGAGGAGCAAGAACGACAGATGCTTGAAATGGAACGAGAGGAAGAGTCCAAGAGATTGAAGCAGCAAAGAATAACAGAAGAAGCTGAACAGAAAAGACTTGCATCTGAGTATACAAAGAGAGAAGAGCAGAGAATTCGGAGGGAGATTGAAGAAAAGGAACTGGAAGAAGCTGTACTTTTGCTTCAAGAAGCTGAGAGAAGGAAAGGGAAAAAGGGCAAAAAGACTGCCATTGAAGGGGAAAAGGTCACAAAGCAGACCCTCATTGAGCAGGCGCTGAATGAGCAGCTTAAGGAAAGGCAGGAAATGGAACGTAAACTCCAGAAACTAGCAAAAACTATGGATTATTTGGAAAGGGCCAAAAGAGAAGAGGAAACCCATCTTATTGAAGCAGCCTATAGAAAACATTTGGTAGATGATGAAATATTCTTTGAACAGCAACAACAGCAAGCAATTGAACAAAGCAGACAACAACATGCTGCAGATCTCGTGGAGAAGAATAGGCTTATCCGAATGCTAGATGATAAGAATATCTTTCAGAATCAAGTAGTTGGCCGTCGCCAAGGAGAGTTTGAGAGACTGAAGCGAGAAGGAGAAGAGAGACTTGCAGAGCTCCATGCAATTCGAAAAC

Fln Alignment:

Contig9319___MATFAKPENALKRAEELMNVGQKQAALQALHDLITSKRYRAWQKTLEKIMFKYVELCVDMRRGRFAKDGLIQYRIVCQQVNVSSLEEVIKYFLXXXXXXXXXXXXXXXXXEIALDVEDLEAEKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCLQYKRTTEFRRLCEIIRNHLVNLNKYRDQRDRPDLNLPESLHLYLDTRFEQLKAATELELWQEAFRSIEDIHGLMCMVKKTPKPQMMAIYYSKLTKIFWISESHLYHAYAWYKLYILQKSYNKNLAQKDLQLMASSVLLAAISIMPYDHKHGAHHFELENEKERSSRMASLLGFSLDSKKDTREVLSRSALLSELVSK
B8LPG3______________MATFAKPENALKRAEELMNVGQKQAALQALHDLITSKRYRAWQKTLEKIMFKYVELCVDMRRGRFAKDGLIQYRIVCQQVNVGSLEEVIKYFLQLSSEKADQAQAQAQASEIALDVEDLEAEKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCLQYKRTTEFRRLCEIIRNHLVNLNKYRDQRDRPDLNLPESLQLYLDTRFEQLKAATELELWQEAFRSIEDIHGLMCMVKKTPKPQMMAIYYSKLTKIFWISESHLYHAYAWFKLYILQKSYNKNLAQKDLQLMASSVLLAAISIMPYDHKHGAHHFELENEKERSSRMASLLGFSLDSKKDTREVLSRAALLSDLVSK

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
2416			20	80	0.995493
2418	20	80			0.995493
2419		20		80	0.995493
2426	16			83	0.994512
2430	83			16	0.994512
2469		83		16	0.994512
2478	83	16			0.994512
2482		90	10		0.90298
2483		90		10	0.90298
2489	90	10			0.90298
2490	10		90		0.90298
2492		90	10		0.90298
2493			10	90	0.90298
2494			90	10	0.90298
2495		10	90		0.90298
2497		10		90	0.90298
2498	90		10		0.90298
2643		10		90	0.90298
2665		12	87		0.992554
2669	57			42	1.0
2689	75	25			0.996473
2690		25		75	0.996473
2691		25		75	0.996473
2692	25	25	50		0.995533
2693	25		75		0.996473
2694	50	25		25	0.995533
2695	66	33			0.997452
2696	66	33			0.997452
2697		33	66		0.997452
2698	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain