SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9296

Length: 1648 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9296

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative CCR4-associated factor 1-7 [Arabidopsis thaliana] sp\|Q9SKZ2.2\|CAF1G_ARATH RecName: Full=Probable CCR4-associated factor 1 homolog 7 gb\|AAK93623.1\| putative CCR4-associated factor [Arabidopsis thaliana] gb\|AAD15397.2\| putative CCR4-associated fact	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Ccr4-associated factor, putative	-	-	6.261e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Poly(A)-specific ribonuclease.	EC:3.1.13.4	-	2.046e-35	-

Source	Gene names
Sma3	At1g15920; At1g80780; At2g32070; At3g44260; At5g10960; At5g22250; CAF1; CAF1-10; CAF1-11; CAF1-2; CAF1-6; CAF1-7; CAF1-9; CAF1.2; CHLREDRAFT_184772; Caf1; F22D22.18; F23A5.13; GSVIVT00017229001; GSVIVT00022110001; GSVIVT00032701001; GSVIVT00033749001; H09

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease CAF1	IPR006941	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G32070.1	Polynucleotidyl transferase, ribonuclease H-like superfamily protein chr2:13640829-13641656 REVERSE LENGTH=275	71%
RefSeq	Arabidopsis thaliana	NP_565735.1	putative CCR4-associated factor 1-7 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002299263.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUT9

Fln msg:

Fln protein: MSTARKGTLRIREVWADNLEEEFDLIRAIVDDFPYLAMDTEFPGVVVRPVGVFRNSAEFHYQTLRANVDLLKLIQLGLTFSDEDGNLPTCGTNEHCVWQFNFREFNINADVYAQDSIELLKQSGIDFEKNEEKGIDSHRFGELLMSSGVVLNENVNWITFHSGYDFGYLLKLLTCQNLPSEESDFFNLLRVYFPKVYDIKYLIKFCNNLHGGLNKLAEIMDVERIGPSHQAGSDSLLTSCIFWKLQDGFFNGSTDKYADLS*

Protein Length: 263

Fln nts: ATTGGGGGAGATTTGGGGTTGTGTGCAGAGGGGGCAGTCGTCATTCCTGAAATTTCTGCCCGAATCTCTGAACGTTTGGCCTCAATTCTCGTTGTGAAATCGTGTTGACGCACCCCGTCCTGATTCCCGACCCAATCCTTAGCATTCACCAGCTTTCAATTTGATGTTGGCAGTAGGTTTTGCGATTGTAAAACCCCCCTCAATTAAATAAGAGCGTTGGCCTCTGGATTTTAACGCGCAGCGGTTTATTTTCTTAATTTCAGAGGTCGTAGGGAGGAGTCCCACGGCATACATTCATAATTATCTGCTCTCTATGTTGGGGATTTGGAGTTCGGAGCCGAGAAGACTAGGGTTTTGGCCTAC_-_ATGTCAACAGCTCGGAAGGGCACTCTTCGCATACGCGAGGTATGGGCAGATAACCTTGAAGAGGAATTTGATTTAATTCGTGCAATAGTTGATGATTTCCCTTATCTAGCCATGGACACGGAGTTCCCTGGTGTTGTAGTCAGACCTGTGGGTGTTTTTAGAAACAGTGCAGAGTTCCATTACCAAACGCTCAGAGCCAATGTGGATCTCTTGAAATTGATTCAACTGGGTCTCACATTCTCGGACGAAGATGGAAATTTGCCCACATGTGGAACGAATGAGCATTGTGTCTGGCAATTCAATTTCAGGGAATTCAACATCAATGCTGATGTCTATGCACAGGATTCCATTGAGTTGTTGAAGCAGAGTGGGATTGATTTCGAGAAGAATGAGGAGAAGGGTATCGATTCGCATCGTTTCGGCGAGCTTCTCATGTCATCGGGTGTTGTGTTGAACGAAAATGTGAATTGGATTACCTTCCATAGTGGATATGACTTTGGGTACCTGTTGAAATTGCTGACATGCCAGAACCTGCCCTCCGAGGAATCGGATTTCTTCAATCTGTTGAGGGTCTATTTCCCCAAAGTGTACGATATCAAGTATTTGATCAAGTTTTGCAATAATCTCCATGGTGGGTTGAACAAGCTGGCTGAGATAATGGATGTTGAGAGGATTGGACCAAGCCATCAAGCCGGTTCTGATAGTCTGCTTACTTCATGTATTTTTTGGAAGCTGCAAGATGGCTTCTTCAATGGGTCTACTGACAAGTACGCTGATTTATCATGA___ACAGCTAGCTGATTATCTTAAGCGATTTGACAAACATATAGAAGCTATGTGGGCAGATTTATGGATGTAATAAATTCACTGTAACTAAGTAATTTCAGATAAGTTATATGTTGGGATTTGTGCCCTAAGGGCTGGAAACATGGTTCCCTTGAAGTACGATTTGTTCCGTCTGCATTTTCTTGGGCTGCCTTGTATATATTTTTGGACAGTAGTGAAACACATACTATTGTAAATTGTAACTCATTTCGGGTTCATCCCTAAGGCTGAAAGTTCACAGAATATATTTGAGGAACCTGAAGGTTGAGGTGAAAATTTTGAATTTGCATTAAGAGGTGATTCTCGAAATTTCCACATGTAAATCTGTTGTCACTGATTCTGATGCCTGTCCTGGTAGGGACTGTGAGGCACACAGCAGAGGAAGCCATCCCTGGAGATTCATCTATATGTGTGTGTGTATAAACTCCTGTTTTCAACATAAATATTATAATGACAAAAAGTG

Fln Alignment:

Contig9296___TLRIREVWADNLEEEFDLIRAIVDDFPYLAMDTEXXXXXXXXXXXXXNSAEFHYQTLRANVDLLKLIQLGLTFSDEDGNLPTCGTNEHCVWQFNFREFNINADVYAQDSIELLKQSGIDFEKNEEKGIDSHRFGELLMSSGVVLNENVNWITFHSGYDFGYLLKLLTCQNLPSEESDFFNLLRVYFPKVYDIKYLIKFCNNLHGGLNKLAEIMDVERIGPSHQAGSDSLLTSCIFWKLQDGFFNGSTDKYA
A9NUT9______________SLIIREVWADNLMEEFALIREIVDDYPYIAMDTEFPGIVVRPVGNFKTASEFHYYTLKSNVDILNLIQLGLTFSDEDGNLPRCGTDKYCIWQFNFREFNLDKDMYAIDSIELLQQSGIDFKKNNEDGIDAQVFGELLMSSGIVLNDTVHWVTFHSGYDFGYMLKLLTCQQLPPTPAGFFNLINMYFPTVYDIKHLMKFCNSLHGGLNKLAELLDVKRIGVCHQAGSDSLLTSCAFRKLREGFFNGSTEKYA

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
127		50		50	1.0
360		85		14	0.993533
645	87		12		0.992554
655		87		12	0.992554
676	88			11	0.923564
732			85	14	0.993533
733			14	85	0.993533
762	88			11	0.923564
805	10		90		0.90298
869	10	90			0.90298
872			10	90	0.90298
873			10	90	0.90298
961		88	11		0.923564
962	88		11		0.923564
963	88		11		0.923564
1235	20	80			0.995493
1354		25	75		0.996473
1355	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain