SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9285

Length: 2030 nt

UniGene Fasta

>sp_v3.0_unigene9285
ATGGGGGGACGACTGTTTACCGGAAAAAGTTACATCTCGTTCGTTGAAGCTTGAATAATTGTGTTCAGAATTCTTCTATGCGATGTTGCGGACAACATTTATGGACGACTGTTTACCGGAAAATGTTACATCTCGTTCGTTGAAGCTTGAATAATTGTGTTCAGTATTTTTCTATGCGATGTTGCGGCTTTTCAGTGTCATCTGTACTCCTTTATAGGTGGAGAATTGCATTTATTATGATTGTCTGGAGTGACATTTTGCGAGTTGCGCGAGTTTAGGGTTGGTGCAGAAAGAAGGAAGGAAAAGATGGAGGTAGAAGAGCCCACGGGCAATGATGGACAGCGTCGCAAAGTTTTGCTTATTTCAGCTGGAGCGAACCATACGGTTGCCCTTCTCTCTGGAAATTTGGTCTGCTCTTGGGGCCGTGGAGAAGATGGACAATTAGGGCATGGGGATGCACATGATCGACCTATTCCCACAATTGTAAGTGCTCTTGATGGTTGTGAAATTACCTCAGTCATTTGCGGAGCTGATCATACGACAGCATATTCAGACTCGACACTGGTTGTTTACAGTTGGGGCTGGGGAGATTTTGGAAGGCTTGGACATGGAGACTCTAGTGATTTGTTTATTCCACAAGCAATCAAGACCCTACAAGGACTTCGGATCAAGCAAATAGCATGTGGGGATAGTCATTGTCTAGCTGTCACAATAAATGGGGAAGTGCAAAGTTGGGGACGCAACCAAAATGGGCAGCTTGGCCTTGGAAACACGGAAGACTCCCTTGTGCCTCAGAAGATTCAAGGTTTCCAGGGAATAGCTGTAAAGATGGTAGCAGCAGGTGCTGAACATACAGTTGCTGTAACAGAGGATGGAAAGGTTTATGGGTGGGGGTGGGGTCGCTACGGAAACCTAGGTCTGAATGATAGAAACGACCGGCTTGTTCCAGAGGAAGTGGCAGCTATAAATGGAGAAAAGTTTACCATGGTTGCTTGTGGATGGCGCCACACTATTGCAATCTCTGATTCTGGCAGTTTGTACACGTATGGTTGGAGTAAGTATGGACAACTGGGTCATGGCGATAATGAAGATCATCTTGTTCCATGTCGTGTCGAGGGCTTAAGGAATGCTCACATAGCTCAGATCTCTGGTGGCTGGCGACATACAATGGCTCTCGATGTAGATGGGCAACTGTATGGTTGGGGATGGAATAAGTTTGGCCAGCTTGGTGTTGGAGATAATATTGACCACTCTGGCCCACAGAGAGTGAAGCTTCCTTCTGAAGAGGAGGTTGTGCATGTTTCTTGTGGATGGAGACATACAGTTGTAATTACATCCAAAAGTAATGTATTCTCGTGGGGCAGGGGCACAAGTGGCCAGTTAGGACATGGAGACATCCTTGACAGAAATATGCCTCTACTCATAGAAGCCTTGAGTGTGGATGGCTCAGCGTGTGAGCAAATTCAAACTTCTAAAACAACAGTTCTATCAGGCTCAAGTTGGATATCACCATCAGAGAGATACGCAATTGTCCCAGATGAAACTGGTACCGTTCAACTTTCTACTGTCCCCAAGAGCTCTATTGGTGATGCTAGTGTTCCAGATGGTGACATTAAGCGTGTACGAACAGAATAGTGAAGTAATAAGCAGTGCTGCTTATTTACTATGGAAGATGTGATTTATATTAGGCTATTTCTGGAAGTGTCTGTAATTATAAAATAAGAGATGTATAAGACTTGTCTAGTTATGCACTTGGAATTAATCGAATATGACAATATGACAGCTATAGAGCGAATATTTATTCCGCGGTGGAAAAAGCTTTCAGATGCAAGTGATTGCAGATGCTTTAAACTGGTGTGCATTCATTTGGAGCTCAAGAAACAATCCTTGTGACTATGAAACACCGCATGATACTGAAAATGACGCAATAATTATATTGTAGAGACATAAATTAGTGATGTTAAATTGTTGGCCGTGTATTGAATAACTGTGTTAGTGTTATATATCAGCTATTGCTTTTGTTTCACTGC

Ace file of the UniGene sp_v3.0_unigene9285

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UVB-resistance protein UVR8 [Arabidopsis thaliana]	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%

Source	Gene names
Sma3	At5g63860; CHLREDRAFT_122886; GSVIVT00019292001; OSJNBa0006B20.1; OSJNBb0086G13.15; Os02g0554100; Os04g0435700; OsI_07634; OsI_15977; OsJ_07117; OsJ_14886; P0470G10.15; PHYPADRAFT_195710; PHYPADRAFT_69881; POPTRDRAFT_718641; RCOM_1698650; UVR8; VITISV_010

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	response to UV-B	GO:0010224	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G63860.1	UVR8 Regulator of chromosome condensation (RCC1) family protein chr5:25554821-25558587 REVERSE LENGTH=440	70%
RefSeq	Arabidopsis thaliana	NP_201191.1	protein UV-B resistance 8 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002309939.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNM4

Fln msg: your sequence is longer than subject: 443 - 286

Fln protein: MEVEEPTGNDGQRRKVLLISAGANHTVALLSGNLVCSWGRGEDGQLGHGDAHDRPIPTIVSALDGCEITSVICGADHTTAYSDSTLVVYSWGWGDFGRLGHGDSSDLFIPQAIKTLQGLRIKQIACGDSHCLAVTINGEVQSWGRNQNGQLGLGNTEDSLVPQKIQGFQGIAVKMVAAGAEHTVAVTEDGKVYGWGWGRYGNLGLNDRNDRLVPEEVAAINGEKFTMVACGWRHTIAISDSGSLYTYGWSKYGQLGHGDNEDHLVPCRVEGLRNAHIAQISGGWRHTMALDVDGQLYGWGWNKFGQLGVGDNIDHSGPQRVKLPSEEEVVHVSCGWRHTVVITSKSNVFSWGRGTSGQLGHGDILDRNMPLLIEALSVDGSACEQIQTSKTTVLSGSSWISPSERYAIVPDETGTVQLSTVPKSSIGDASVPDGDIKRVRTE*

Protein Length: 444

Fln nts: ATGGGGGGACGACTGTTTACCGGAAAAAGTTACATCTCGTTCGTTGAAGCTTGAATAATTGTGTTCAGAATTCTTCTATGCGATGTTGCGGACAACATTTATGGACGACTGTTTACCGGAAAATGTTACATCTCGTTCGTTGAAGCTTGAATAATTGTGTTCAGTATTTTTCTATGCGATGTTGCGGCTTTTCAGTGTCATCTGTACTCCTTTATAGGTGGAGAATTGCATTTATTATGATTGTCTGGAGTGACATTTTGCGAGTTGCGCGAGTTTAGGGTTGGTGCAGAAAGAAGGAAGGAAAAG_-_ATGGAGGTAGAAGAGCCCACGGGCAATGATGGACAGCGTCGCAAAGTTTTGCTTATTTCAGCTGGAGCGAACCATACGGTTGCCCTTCTCTCTGGAAATTTGGTCTGCTCTTGGGGCCGTGGAGAAGATGGACAATTAGGGCATGGGGATGCACATGATCGACCTATTCCCACAATTGTAAGTGCTCTTGATGGTTGTGAAATTACCTCAGTCATTTGCGGAGCTGATCATACGACAGCATATTCAGACTCGACACTGGTTGTTTACAGTTGGGGCTGGGGAGATTTTGGAAGGCTTGGACATGGAGACTCTAGTGATTTGTTTATTCCACAAGCAATCAAGACCCTACAAGGACTTCGGATCAAGCAAATAGCATGTGGGGATAGTCATTGTCTAGCTGTCACAATAAATGGGGAAGTGCAAAGTTGGGGACGCAACCAAAATGGGCAGCTTGGCCTTGGAAACACGGAAGACTCCCTTGTGCCTCAGAAGATTCAAGGTTTCCAGGGAATAGCTGTAAAGATGGTAGCAGCAGGTGCTGAACATACAGTTGCTGTAACAGAGGATGGAAAGGTTTATGGGTGGGGGTGGGGTCGCTACGGAAACCTAGGTCTGAATGATAGAAACGACCGGCTTGTTCCAGAGGAAGTGGCAGCTATAAATGGAGAAAAGTTTACCATGGTTGCTTGTGGATGGCGCCACACTATTGCAATCTCTGATTCTGGCAGTTTGTACACGTATGGTTGGAGTAAGTATGGACAACTGGGTCATGGCGATAATGAAGATCATCTTGTTCCATGTCGTGTCGAGGGCTTAAGGAATGCTCACATAGCTCAGATCTCTGGTGGCTGGCGACATACAATGGCTCTCGATGTAGATGGGCAACTGTATGGTTGGGGATGGAATAAGTTTGGCCAGCTTGGTGTTGGAGATAATATTGACCACTCTGGCCCACAGAGAGTGAAGCTTCCTTCTGAAGAGGAGGTTGTGCATGTTTCTTGTGGATGGAGACATACAGTTGTAATTACATCCAAAAGTAATGTATTCTCGTGGGGCAGGGGCACAAGTGGCCAGTTAGGACATGGAGACATCCTTGACAGAAATATGCCTCTACTCATAGAAGCCTTGAGTGTGGATGGCTCAGCGTGTGAGCAAATTCAAACTTCTAAAACAACAGTTCTATCAGGCTCAAGTTGGATATCACCATCAGAGAGATACGCAATTGTCCCAGATGAAACTGGTACCGTTCAACTTTCTACTGTCCCCAAGAGCTCTATTGGTGATGCTAGTGTTCCAGATGGTGACATTAAGCGTGTACGAACAGAATAG___TGAAGTAATAAGCAGTGCTGCTTATTTACTATGGAAGATGTGATTTATATTAGGCTATTTCTGGAAGTGTCTGTAATTATAAAATAAGAGATGTATAAGACTTGTCTAGTTATGCACTTGGAATTAATCGAATATGACAATATGACAGCTATAGAGCGAATATTTATTCCGCGGTGGAAAAAGCTTTCAGATGCAAGTGATTGCAGATGCTTTAAACTGGTGTGCATTCATTTGGAGCTCAAGAAACAATCCTTGTGACTATGAAACACCGCATGATACTGAAAATGACGCAATAATTATATTGTAGAGACATAAATTAGTGATGTTAAATTGTTGGCCGTGTATTGAATAACTGTGTTAGTGTTATATATCAGCTATTGCTTTTGTTTCACTGC

Fln Alignment:

Contig9285___MEVEEPTGNDGQRRKVLLISAGANHTVALLSGNLVCSWGRGEDGQLGHGDAHDRPIPTIVSALDGCEITSVICGADHTTAYSDSTLVVYSWGWGDFGRLGHGDSSDLFIPQAIKTLQGLRIKQIACGDSHCLAVTINGEVQSWGRXXXXXXXXXXTEDSLVPQKIQGFQGIAVKMVAAGAEHTVAVTEDGKVYGWGWGRYGNLGLNDRNDRLVPEEVAAIN
B8LNM4______________MEVEEATRNDGQRRKVLLISAGASHTVALVAGNLVCSWGRGEDGQLGHGDAEDRPMPTFVSALDGCEITSVICGADHTTAYSDSRLVVYSWGWGDFGRLGHGNSSDLFIPHAIKTLQGLQIKQIACGDSHCLAVTINGEVQSWGRNQNGQLGVGDNIDHSFPQRVKLPAEEEVVQVSCGWRHTVAITGKSNVFSWGRGTSGQLGHGDILDRNMPVLIEALS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
471		80		20	1.0
515		54		45	1.0
1365	87		12		0.992554
1950		5		91	0.995208
1963	3	6		90	0.997952
2021	20			80	0.995493
2022		20		80	0.995493
2023	16		83		0.994512
2026	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain