SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9221

Length: 881 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9221

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Trans-cinnamate 4-hydroxylase n=2 Tax=Pinaceae RepID=Q9XEH8_PINTA	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Sma3	Cinnamic acid 4-hydroxylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	7.302e-06	-
Sma3	Trans-cinnamate 4-monooxygenase.	EC:1.14.13.11	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Flavonoid biosynthesis	00941	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	At1g74550; At2g40890; At5g07990; BcCyp450; C3H; C3H1; C3H2; C3H3; C4H; C4H-1; C4H-2; C4H1; C4H1-1; C4H1-2; C4H2; C4H2-1; C4H2-2; C4H2\|CYP73A42; C4H3; CYP73; CYP73A1; CYP73A10; CYP73A11; CYP73A12; CYP73A13; CYP73A14; CYP73A16; CYP73A19; CYP73A2; CYP73A27;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	trans-cinnamate 4-monooxygenase activity	GO:0016710	Molecular Function	-
Sma3	flavonoid 3'-monooxygenase activity	GO:0016711	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	p-coumarate 3-hydroxylase activity	GO:0046409	Molecular Function	-
Sma3	coumarin biosynthetic process	GO:0009805	Biological Process	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G30490.1	ATC4H, C4H, CYP73A5, REF3 cinnamate-4-hydroxylase chr2:12993861-12995683 REVERSE LENGTH=505	62%
RefSeq	Arabidopsis thaliana	NP_180607.1	trans-cinnamate 4-monooxygenase [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002325637.1	cytochrome P450 [Populus trichocarpa]	63%

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
380		85	14		0.993533
407		85		14	0.993533
505	18		81		0.999994
551	26	73			1.0
584		26	73		1.0
593	42		57		1.0
626	47		42		1.0
681		76	23		1.0
687		25	66		1.0
719	88		11		0.923564
727		40		60	1.0
753		62		12	1.0
762		37	62		1.0
764		62	37		1.0
765	12	87			0.992554
783		71		28	1.0
791			16	83	0.994512
792	83		16		0.994512
812		20		80	0.995493
817		80	20		0.995493
835	85			14	0.993533
860	85			14	0.993533
863	14			85	0.993533
865	14		14		0.984337
866		14	85		0.993533
867	16			83	0.994512
868		16	66	16	0.988813
869	16			66	0.988813

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain