SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9218

Length: 3568 nt

UniGene Fasta

>sp_v3.0_unigene9218
CGTCGTGACCTTGGCTGTCATTGGGGATATTCCAGCAAATTCGGCTTCTGTTCTCGTTGTTCCCACACAAATATGCAGTACATTTCAGACTGCATATTCTTCTTTGATCTAATGAATAGATGCATACATTTCTGCTGGCGGTTCGCCACTGTAAGTTTTAGTACATGCCATCCTGTAGCAATTTGACAGGTTAGCATCAGCGCTTGTACGACCAGGGGCTTTTATAAGAGAATCTGGTAAGTTCAAAGGCCGATTAAGTACCCCATTGCGGCAATTTCACAGGTTTTACAGCTGATAAGCTGTGATCTGATGTTTACTCAAGCAATAAGCAGTTAAGATCATGAGCACATTGCAGAACCCCGTTTTGAACCTCACAATTACTACTTTTTTTATCCAATGGGCAATATCTATTTCTGTAAAATTTTCTTGAAATACTAGGGTTAGTACACGTGGCTGAGTAATCCCTCGAAACACGATCCAGGTTATGCAGACAAGAATTGGGAAGACTGGTAGTGTATTTATTTAAGTGTGACACATCAAGTGGCAGCAAGAATCTAATGCCATTAAGCGCAGATTAGGGTTTTACGTGATGTCTGGGGATCACAGTGACCTCAAGATTCTGTCAAGGTCACAGTCCTCAGGCTCAGATTCAGATTTGGAAGTGCAGAGGTTGGTAAGCAGGCCCCCTGACAATATTGATAAGGATGCTGCAACGAGTTTGGACAGGAGGAGATCGATTAGAAGGTTGTTGAGTAGGAGAATTGTGCCAAAGGAAGGTCGATCTCCTTTGAGCACTCAGGCGGTCTCGCAGGATCGGCTCGGTGAAGGTGCTCCTCCAGAATGGGCTTTGCTGTTGATGGGTTGTCTGCTTGGATTGGCTACCGGGTTGTGCGTAGCTGCATTCAATAATGGGGTACATATAATACACGAGTGGGCATGGGCAGGAACACCACAGGAAGGTGCTGCTTGGCTTCGTTTGCAAAGACTTGCTGATACTTGGCATCGTATAATGCTAATTCCTGTAACTGGTGGAGTTATTGTTGGTGTTATGCATGGGCTACTGGAAATTATTGACCAGATTAAGCAGTCAAGGCCGCATCAAAGGCGGAGATTTGATTTGTTAGCTATATTATGCCCATCAATTAAGGCAATTCAGGCTGCTGTAACTTTAGGAACTGGTTGCTCTTTAGGACCTGAAGGCCCTAGCGTGGACATTGGGAAATCTTGTGCTCATGGATTTGCTGAAACCATGCAAAATAATAGAGAAAGAAGAATCGCTCTTGTTGCAGCTGGTGCAGCAGCTGGAATATCATCAGGGTTCAATGCAGCAGTTGCAGGTTGTTTCTTTGCTATTGAGACTGTTTTAAGGCCTCTCCATGCAGAGAATTCACCTCCGTTTACAACTGCTATGATAATTTTGGCCTCTGTTTTATCATCTACGGTGTCTACTGTTATAGTTGGTGGAAGTTCAGCATTTACAGTGCCCACATATGAGCTAAAATCTGCTGCAGAACTTCCTTTGTATCTCATGCTGGGAATGATTTGTGGAGTGGTAAGTGTTCTCTTTCTTCGCCTGGTGGCATGGTTTACAAGGTTTTTTGACTTTGTTAAGGAGCGTTTTGGGATACCCACAGTTATACATCCTGCCCTAGGTGGTTTAGGAGCTGGATTGATAGCTCTACGGTATCCGGGGATATTGTATTGGGGCTTCACAAATGTTGATGAGATATTGCATACTGGAAAGAGTGCATCTGCTCCTGGAATATGGTTGTTGACTCAACTTGTTGGTGCAAAAGTCATTGCCACATCCCTTTGCAAAGGGTCTGGTCTTGTAGGAGGGTTATATGCTCCAAGCTTGATGATTGGTGCTGCAGTTGGTGCTGTTTTTGGTGGTTTAGCTGCCAAGTTAATCAATGCAGCAATACCAGGTAATGCGGCAGTGGCACACCCACAAGCTTATGCTCTGGTTGGAATGGCAGCTACTTTAGCATCTGTTTGTTCAGTTCCTCTTACATCAGTATTGCTTTTGTTTGAACTTACTAAGGATTATCGCATCTTGCTTCCACTCATGGGTGCAGTTGGATTAGCAATCTGGGTAGCATCTATAGCAAATCAATCAAAGGATACTGAGTCTGGAGATGCACAAGGGTTGCTGCATACATATCTACCTTTGACAGAGAATGGGGTTGAACAGAATGGACAAAACATTTTAAGGAAAGCTGGTGATGCAAATGAAGTAGAACTCTGTATTGTATCAGATGGTATTAGGGCAGATGTGATTACTGACAATGATCTCTTACATGATGTAAAGGTTTCTCAGGCCATGTCAACAAGCTATGTTAAAGTCTCTGCGAATGTTACATTGAAAGAGGCAATACAACTCATGATAGAAAAGAAGCAAAACTGTGTGCTTGTTGTTGATGATGAAGGTCTACTAGAGGGCATCATGACTCTTGGAGATCTCCAAAGGCAGGTGCAAGGGGCAGCCGATGTTAATGCCCAGAGTGATACAATTACGTTGGATGTAAATGAAACACCAGTTTCATCTGTTTGTACACGGCGAATAAATTATCGAGGACATGAGCGTGGGATTCTGGTCTGTTATCCAGATACAGATCTGATGATGGCAAAAGAAATTATGGAGGCTAGAGGAATAAAACAGTTGCCTGTTGTTACACGTGGTGGAGAGCGAAGGCAAGAGCGAGGGCATACACTTCTCGGTTTACTATGTCATGACGGCATTCCCAATTGTCTGAGGGAAGCAAGGAAACAAGTCATGGCACTAGCTGCTCAGTCAAGGCAGGATAAAGATGACGAGATCCTGCTTAGTGGACACTGAAAATATAGCTGTCCACTTGGAAAAAAATTGTGTTTTGACTCCTGCCATGTGTGCAAGGTAGTTCATAAGCACGGAGAGCTTCTTTTATTGGTTATACAATGGGCAAATTTTCTTTTGGGTGGGATTTGAAAATTCTCATAGCAATAATACTATGATGCATCAACCTAACTTGGGCTGGCCTCTAATCTTCTCATATTGTCATCTCTGACAGTTTGTACTCCTAGAAGTCATTGTCCTGTTGAAAGATCAATAGCAATGAATTTAACAGGAAGCTGAAGATCTTATTCTCAGTCTCCGGCATTTAGTACTGTTCAGATGTATTACTTATTTTATTTGGCAGAGCCAACAAGACTGGCCCCATTATTAGTTATTTAACCTTCTCAGAATTGTGTATTATGAGAGTAACATAAGGCCTTGGTATCAGCAACGTTTGGCCTCTTGATTCATTTCATGAGACAAATGCGAGACCATTGAGCTTGATGCATTCTATATTCTACTGTAAATTTTTTCATGATATGATGCTCTAAAGAAAATGAGCACACACATAAGCATGCACTGCTTATTGAGCTATGTAAAAGTAACTAGAGTTTGTTTTGGTCATGCTCTTACACCAATCTTGTGTAATGTGCACTGCTTTTCATTCCGATTCAACTTTTTAGCAAGTGCAATCATTTTCAAGTTGCAATGTTGTGATTCATTTTGATGATCTATAAAATTGGATGTAGTAAT

Ace file of the UniGene sp_v3.0_unigene9218

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	chloride channel protein CLC-f [Arabidopsis thaliana] sp\|Q8RXR2.2\|CLCF_ARATH RecName: Full=Chloride channel protein CLC-f; Short=AtCLC-f gb\|AAK53391.1\|AF366368_1 CLC-f chloride channel protein [Arabidopsis thaliana] emb\|CAC36386.1\| hypothetical protein [A	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	71%

Source	Gene names
Sma3	At1g55620; At4g35440; CLC-E; CLC-F; F15J1.10; F20N2.5; F23E12.10; GSVIVT00003335001; GSVIVT00036320001; OJ1008_D06.20; OJ1118_A06.1; Os02g0720700; Os08g0499200; OsI_08728; OsI_29755; OsJ_08177; OsJ_27819; Ot04g04270; P0654B04.5; PHYPADRAFT_136942; PHYPADR

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	voltage-gated chloride channel activity	GO:0005247	Molecular Function	-
Sma3	chloride ion binding	GO:0031404	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chloride transport	GO:0006821	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Chloride channel, voltage gated	IPR001807	-	-
Sma3	Chloride channel, core	IPR014743	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55620.2	CLC-F, ATCLC-F chloride channel F chr1:20787338-20790990 REVERSE LENGTH=781	66%
RefSeq	Arabidopsis thaliana	NP_564698.1	chloride channel protein CLC-f [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002300594.1	Cl-channel clc-3 [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7UAU9

Fln msg:

Fln protein: MSGDHSDLKILSRSQSSGSDSDLEVQRLVSRPPDNIDKDAATSLDRRRSIRRLLSRRIVPKEGRSPLSTQAVSQDRLGEGAPPEWALLLMGCLLGLATGLCVAAFNNGVHIIHEWAWAGTPQEGAAWLRLQRLADTWHRIMLIPVTGGVIVGVMHGLLEIIDQIKQSRPHQRRRFDLLAILCPSIKAIQAAVTLGTGCSLGPEGPSVDIGKSCAHGFAETMQNNRERRIALVAAGAAAGISSGFNAAVAGCFFAIETVLRPLHAENSPPFTTAMIILASVLSSTVSTVIVGGSSAFTVPTYELKSAAELPLYLMLGMICGVVSVLFLRLVAWFTRFFDFVKERFGIPTVIHPALGGLGAGLIALRYPGILYWGFTNVDEILHTGKSASAPGIWLLTQLVGAKVIATSLCKGSGLVGGLYAPSLMIGAAVGAVFGGLAAKLINAAIPGNAAVAHPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVASIANQSKDTESGDAQGLLHTYLPLTENGVEQNGQNILRKAGDANEVELCIVSDGIRADVITDNDLLHDVKVSQAMSTSYVKVSANVTLKEAIQLMIEKKQNCVLVVDDEGLLEGIMTLGDLQRQVQGAADVNAQSDTITLDVNETPVSSVCTRRINYRGHERGILVCYPDTDLMMAKEIMEARGIKQLPVVTRGGERRQERGHTLLGLLCHDGIPNCLREARKQVMALAAQSRQDKDDEILLSGH*

Protein Length: 751

Fln nts: CGTCGTGACCTTGGCTGTCATTGGGGATATTCCAGCAAATTCGGCTTCTGTTCTCGTTGTTCCCACACAAATATGCAGTACATTTCAGACTGCATATTCTTCTTTGATCTAATGAATAGATGCATACATTTCTGCTGGCGGTTCGCCACTGTAAGTTTTAGTACATGCCATCCTGTAGCAATTTGACAGGTTAGCATCAGCGCTTGTACGACCAGGGGCTTTTATAAGAGAATCTGGTAAGTTCAAAGGCCGATTAAGTACCCCATTGCGGCAATTTCACAGGTTTTACAGCTGATAAGCTGTGATCTGATGTTTACTCAAGCAATAAGCAGTTAAGATCATGAGCACATTGCAGAACCCCGTTTTGAACCTCACAATTACTACTTTTTTTATCCAATGGGCAATATCTATTTCTGTAAAATTTTCTTGAAATACTAGGGTTAGTACACGTGGCTGAGTAATCCCTCGAAACACGATCCAGGTTATGCAGACAAGAATTGGGAAGACTGGTAGTGTATTTATTTAAGTGTGACACATCAAGTGGCAGCAAGAATCTAATGCCATTAAGCGCAGATTAGGGTTTTACGTG_-_ATGTCTGGGGATCACAGTGACCTCAAGATTCTGTCAAGGTCACAGTCCTCAGGCTCAGATTCAGATTTGGAAGTGCAGAGGTTGGTAAGCAGGCCCCCTGACAATATTGATAAGGATGCTGCAACGAGTTTGGACAGGAGGAGATCGATTAGAAGGTTGTTGAGTAGGAGAATTGTGCCAAAGGAAGGTCGATCTCCTTTGAGCACTCAGGCGGTCTCGCAGGATCGGCTCGGTGAAGGTGCTCCTCCAGAATGGGCTTTGCTGTTGATGGGTTGTCTGCTTGGATTGGCTACCGGGTTGTGCGTAGCTGCATTCAATAATGGGGTACATATAATACACGAGTGGGCATGGGCAGGAACACCACAGGAAGGTGCTGCTTGGCTTCGTTTGCAAAGACTTGCTGATACTTGGCATCGTATAATGCTAATTCCTGTAACTGGTGGAGTTATTGTTGGTGTTATGCATGGGCTACTGGAAATTATTGACCAGATTAAGCAGTCAAGGCCGCATCAAAGGCGGAGATTTGATTTGTTAGCTATATTATGCCCATCAATTAAGGCAATTCAGGCTGCTGTAACTTTAGGAACTGGTTGCTCTTTAGGACCTGAAGGCCCTAGCGTGGACATTGGGAAATCTTGTGCTCATGGATTTGCTGAAACCATGCAAAATAATAGAGAAAGAAGAATCGCTCTTGTTGCAGCTGGTGCAGCAGCTGGAATATCATCAGGGTTCAATGCAGCAGTTGCAGGTTGTTTCTTTGCTATTGAGACTGTTTTAAGGCCTCTCCATGCAGAGAATTCACCTCCGTTTACAACTGCTATGATAATTTTGGCCTCTGTTTTATCATCTACGGTGTCTACTGTTATAGTTGGTGGAAGTTCAGCATTTACAGTGCCCACATATGAGCTAAAATCTGCTGCAGAACTTCCTTTGTATCTCATGCTGGGAATGATTTGTGGAGTGGTAAGTGTTCTCTTTCTTCGCCTGGTGGCATGGTTTACAAGGTTTTTTGACTTTGTTAAGGAGCGTTTTGGGATACCCACAGTTATACATCCTGCCCTAGGTGGTTTAGGAGCTGGATTGATAGCTCTACGGTATCCGGGGATATTGTATTGGGGCTTCACAAATGTTGATGAGATATTGCATACTGGAAAGAGTGCATCTGCTCCTGGAATATGGTTGTTGACTCAACTTGTTGGTGCAAAAGTCATTGCCACATCCCTTTGCAAAGGGTCTGGTCTTGTAGGAGGGTTATATGCTCCAAGCTTGATGATTGGTGCTGCAGTTGGTGCTGTTTTTGGTGGTTTAGCTGCCAAGTTAATCAATGCAGCAATACCAGGTAATGCGGCAGTGGCACACCCACAAGCTTATGCTCTGGTTGGAATGGCAGCTACTTTAGCATCTGTTTGTTCAGTTCCTCTTACATCAGTATTGCTTTTGTTTGAACTTACTAAGGATTATCGCATCTTGCTTCCACTCATGGGTGCAGTTGGATTAGCAATCTGGGTAGCATCTATAGCAAATCAATCAAAGGATACTGAGTCTGGAGATGCACAAGGGTTGCTGCATACATATCTACCTTTGACAGAGAATGGGGTTGAACAGAATGGACAAAACATTTTAAGGAAAGCTGGTGATGCAAATGAAGTAGAACTCTGTATTGTATCAGATGGTATTAGGGCAGATGTGATTACTGACAATGATCTCTTACATGATGTAAAGGTTTCTCAGGCCATGTCAACAAGCTATGTTAAAGTCTCTGCGAATGTTACATTGAAAGAGGCAATACAACTCATGATAGAAAAGAAGCAAAACTGTGTGCTTGTTGTTGATGATGAAGGTCTACTAGAGGGCATCATGACTCTTGGAGATCTCCAAAGGCAGGTGCAAGGGGCAGCCGATGTTAATGCCCAGAGTGATACAATTACGTTGGATGTAAATGAAACACCAGTTTCATCTGTTTGTACACGGCGAATAAATTATCGAGGACATGAGCGTGGGATTCTGGTCTGTTATCCAGATACAGATCTGATGATGGCAAAAGAAATTATGGAGGCTAGAGGAATAAAACAGTTGCCTGTTGTTACACGTGGTGGAGAGCGAAGGCAAGAGCGAGGGCATACACTTCTCGGTTTACTATGTCATGACGGCATTCCCAATTGTCTGAGGGAAGCAAGGAAACAAGTCATGGCACTAGCTGCTCAGTCAAGGCAGGATAAAGATGACGAGATCCTGCTTAGTGGACACTGA___AAATATAGCTGTCCACTTGGAAAAAAATTGTGTTTTGACTCCTGCCATGTGTGCAAGGTAGTTCATAAGCACGGAGAGCTTCTTTTATTGGTTATACAATGGGCAAATTTTCTTTTGGGTGGGATTTGAAAATTCTCATAGCAATAATACTATGATGCATCAACCTAACTTGGGCTGGCCTCTAATCTTCTCATATTGTCATCTCTGACAGTTTGTACTCCTAGAAGTCATTGTCCTGTTGAAAGATCAATAGCAATGAATTTAACAGGAAGCTGAAGATCTTATTCTCAGTCTCCGGCATTTAGTACTGTTCAGATGTATTACTTATTTTATTTGGCAGAGCCAACAAGACTGGCCCCATTATTAGTTATTTAACCTTCTCAGAATTGTGTATTATGAGAGTAACATAAGGCCTTGGTATCAGCAACGTTTGGCCTCTTGATTCATTTCATGAGACAAATGCGAGACCATTGAGCTTGATGCATTCTATATTCTACTGTAAATTTTTTCATGATATGATGCTCTAAAGAAAATGAGCACACACATAAGCATGCACTGCTTATTGAGCTATGTAAAAGTAACTAGAGTTTGTTTTGGTCATGCTCTTACACCAATCTTGTGTAATGTGCACTGCTTTTCATTCCGATTCAACTTTTTAGCAAGTGCAATCATTTTCAAGTTGCAATGTTGTGATTCATTTTGATGATCTATAAAATTGGATGTAGTAAT

Fln Alignment:

Contig9218___DRLGEGAPPEWXXXXXXXXXXXXXXXXXXXFNNGVHIIHEWAWAGTPQEGAAWLRLQRLADTWHRIMLIPVTGGVIVGVMHGLLEIIDQIKQSRPHQRRRFDLLAILCPSIKAIQAAVTLGTGCSLGPEGPSVDIGKSCAHGFAETMQNNRERRIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLHAENSPPFTTAMIXXXXXXXXXXXXXXXXXXXXFTVPTYELKSAAELPLYLMLGMICGVVSVLFLRLVAWFTRFFDFVKERFGIPTVIHPXXXXXXXXXXXXRYPGILYWGFTNVDEILHTGKSASAPGIWLLTQLVGAKVIATSLCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXKLINAAIPGNAAVAHPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVASIANQSKDTESGDAQGLLHTYLPLTENGVEQNGQNILRKAGDANEVELCIVSDGIRADVITDNDLLHDVKVSQAMSTSYVKVSANVTLKEAIQLMIEKKQNCVLVVDDEGLLEGIMTLGDLQRQVQGAADVNAQSDTITLDVNETPVSSVCTRRINYRGHERGILVCYPDTDLMMAKEIMEARGIKQLPVVTRGGERRQERGHTLLGLLCHDGIPNCLREARKQVMALAAQSRQD
D7UAU9______________DALGDSAPPEWALLLIGCLLGLATGLCVAAFNRGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVVVGMMHGLLEILDQIKQSSSSQRQGFDLLAAVSPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSVMMENNRERKIALVAAGAAAGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLLGEKPAFTVPVYELKSAAELPLYLILGMLCGVVSVAFTRLVAWYSKSFELIKEKFGLPAVVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIGLLAQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAELINSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVANQAKETEASDTRSPSRGYSFVTP--VEDKNEGIWRQTGDGDSLELSVIGNSSDNEAINDDVLLEDLKVSQAMSKNFVKVSSTMTLKEATKCMHDRQQNCVLVVDAEDFLEGILTYGDIKRYLSKKSKEAPKGDSSLPDVNASLVSSVCTRGMSYRGRARGLLTCYPDTDLASAKELMEAKGIKQLPVVKRGGEPKKERKRSIVAILHYDSIWNFLREVMNGRIPVYQQRKEE

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
24	25	25	50		0.995533
25	25		50	25	0.995533
26			75	25	0.996473
27	75		25		0.996473
28			25	75	0.996473
100			14	85	0.993533
104			14	85	0.993533
108		14		85	0.993533
115	85		14		0.993533
116	85	14			0.993533
125		14		85	0.993533
126	85			14	0.993533
136		14		85	0.993533
152		14		85	0.993533
295	28		71		1.0
296	28	71			1.0
309		14		85	0.993533
322		14		14	0.984337
345	14	85			0.993533
1653			16	83	0.994512
1675	16		83		0.994512
1934		83		16	0.994512
1961	16	83			0.994512
1963		80	20		0.995493
1964			20	80	0.995493
2025	11			88	0.923564
2026	11			88	0.923564
2169			30	70	1.0
2217	90			10	0.90298
2219		90	10		0.90298
2239	10		90		0.90298
2240	90	10			0.90298
2242		90		10	0.90298
2260		11	88		0.923564
2451	14			85	0.993533
2452		85		14	0.993533
2533	85			14	0.993533
2534		85	14		0.993533
2535	85			14	0.993533
2851		20		80	0.995493
2878		25		75	0.996473
3115	78	14		7	0.999974
3122	85		14		0.999981
3124		14		85	0.999981
3136			88	11	0.999952
3289	89			10	1.0
3290			10	89	1.0
3437	10	90			0.90298
3438	90	10			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain