SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9214

Length: 2573 nt

UniGene Fasta

>sp_v3.0_unigene9214
CGTCGTGACCTTGGCTGTCACTCAGGCATGGCAGTGGAAATTATTGTCCAGTATCCAATACAAGGCCGACCATATCGGCCTGGAATTGACAATCTGTTGGTGCTTCTTATTGGTGGGATTCCAATAGCAATGCCCACAGTTCTTTCTGTCACTATGGCCATTGGTTCACATCGCCTTTCTCAACAGGGTGCTATTACTAAAAAGGATGACTGCTATTGAGGAAATGGCCGGGATGGATGTTTTGTGTAGTGATAAGACAGGAACGCTAACATTGAACAAGCTTACTGTAGACAAAACCGCAGTTGAGGTATTTGCAAAAGGAGTTGATAAGGATGCGCTTCTCTTGATGGCTGCAAGAGCATCCAGAATAGAGAACCAAGATGCGATTGATGCAGCTGTTGTTGGGGTTCTTGCTGATCCTAAAGAGGCGCGGGCAGGTATTCAAGAGGTTCATTTTCTTCCTTTCAACCCAACTGACAAACGGACTGCACTCACCTATATTGATAGGGAAGGAAGGATGCATAGAGTTAGCAAAGGTGCACCTGAGCAGATCCTTGCCCTAGCACACAACAAGTCAGAAATTCAACGCAGAGTCCATACAGTGATAGACAAGTATGCTGAACGTGGACTTCGTTCTCTTGCAGTTGCCTATCAGGAGGTACCAGATGGCAAGAAGGAAAGTCCAGGAGGACCCTGGCAATTTATTGGTCTCATGCCTCTTTTTGATCCTCCACGCATGGACAGTGCAGAAACAATAAGAAGGGCTCTCGATCTGGGTGTGAGTGTTAAAATGATCACAGGAGATCAGCTAGCTATAGGCAAGGAGACAGGCCGTCGATTGGGGATGGGTACAAACATGTATCCTTCATCATCATTACTAGGTCAGGCCAAAGATGCTGCCGCTGAAGCTGTAAATATTGATGATTTGATTGAGAAGGCTGATGGTTTTGCTGGTGTCTTCCCCGAGCACAAATATGAGATAGTTAAACGACTGCAAGCAAGGAAACACATTTGTGGCATGACCGGTGATGGAGTCAATGATGCACCGGCACTTAAGAAGGCAGATATAGGAATTGCTGTTGCAGATGCAACGGATGCAGCCCGAAGTGCATCTGATATTGTTCTTACAGAACCAGGCTTGAGTGTTATCATTAGTGCTGTGTTAACAAGCCGTGCAATCTTTCAACGCATGAAGAATTACACTATTTATGCTGTATCGATAACAATACGTATTGTGGTTGGTTTCATGCTTTTGGCATTAATATGGAGGTTTGACTTTCCACCATTCATGGTACTGATAATTGCTATATTAAATGATGGTACCATAATGACAATCTCAAAAGACAGGGTGAAACCATCACCTCTGCCAGATAACTGGAACCTTTCAGAAATTTTTGCCACAGGGATTATTATTGGCAGTTACCTAGCAATGATGACCGTCATCTTTTTCTGGGTCACCTTCAAGACAGATTTCTTTCCAAGAACATTTGGTGTTTCTAGTCTTCATATTCCCAGTGAAGAAAATACTCAGAAACTAAATTCTGCAGTGTATCTTCAAGTCAGCACTATAAGTCAGGCTCTCATATTTGTCACTCGATCTAGAAGCTGGTCTTTTGTAGAGCGTCCTGGCCTGTTGCTAGTAACTGCATTTGCCGTTGCTCAATTGGCTGCAACATTAATTGCTGTCTATTTAGACTTGGACTTCGCTTCTATAAGGGGCATTGGCTGGGGGTGGGCGGGGGTAATATGGCTTTATAACATAATCTTTTACTTTCCACTTGATCTTATCAAGTTTGCAATTCGTTATGCCATCAGTGGAAGGGCATGGGATTTACTGATTCAGCAAAGGGTTGCCTTTACCACCCAGAAGGATTTTGGGAGAGAGGCCAGAGAGATAAAATGGGCTCATGCTCAGAGGACTTTGCATGGATTACAAACACCAGACACGAAACTGTTTGGTGACAGAAGCAGCTTCAGGGAACTCAATCAAATGGCTGAAGAGGCAAAAAGACGTGCTGAAATTGCAAGGCTGAGAGAGATAAATACTTTGAAGGGGCATGTGGAATCTGTCGTAAGACTCAAGGGTTTGGATATTAATACAATTCAACAGTCTTACACTGTTTGAGGGATGCCATTTTTTCTACTTTCATAATGTAGAAAGAATCAAATAGCATCTACACTCCAAGTGAAAAGAAATTTTAGTGCTATGTGAAAAGAAATTTTAGTGCTATGAATTATTACACTTGGATTATGGTGGTGATAAAAGAGTGGAAATCGTTCTTCCATTCATTGGAGTTGAGTCTTGTCTTGACTAAATCAAGATTTGAAAAATGTCAAAAAAGTTTGTTAGTTGTATTAGGATGGAGTATATTACTATATATTTTAAAATGGGTTATTTCACCATAAGTTTAAACTCTACAAATTGCCATCTTGGCCAGTGCAATGGAGTGGGGCCGAACCCCTTTGCCATATTGGCATGTACAAGTAGGCACAACTAAAAGATTGTCCAATTTTGAAAGTTTATGTACATTTTATGCTGGTCCAATATAACTTTGCGTCCGTTTATTTTACCC

Ace file of the UniGene sp_v3.0_unigene9214

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATPase 4, plasma membrane-type n=33 Tax=Magnoliophyta RepID=PMA4_ARATH	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Sma3	Plasma membrane H+-ATPase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Adenosinetriphosphatase.	EC:3.6.1.3	-	3.182e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Purine metabolism	00230		3.182e-09	%
Sma3	Transferred entry: 3.6.3.6.	EC:3.6.1.35	-	1.572e-15	-
Sma3	Proton-exporting ATPase.	EC:3.6.3.6	-	7.42688e-42	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		7.42688e-42	%

Source	Gene names
Sma3	AHA1; AHA10; AHA11; AHA2; AHA3; AHA4; AHA5; AHA6; AHA7; AHA8; AHA9; AT4G30190; ATP1; ATP2; Aa_42640; At1g17260; At1g80660; At2g07560; At2g18960; At2g24520; At3g42640; At3g47950; At3g60330; At4g11730; At4g30190; At5g57350; At5g62670; BHA-1; BHA-2; CHLREDRA

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	hydrogen-exporting ATPase activity, phosphorylative mechanism	GO:0008553	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	vacuole organization	GO:0007033	Biological Process	-
Sma3	vacuolar acidification	GO:0007035	Biological Process	-
Sma3	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	-
Sma3	proton transport	GO:0015992	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, plasma-membrane proton-efflux	IPR006534	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G47950.1	AHA4, HA4 H(+)-ATPase 4 chr3:17693015-17697801 FORWARD LENGTH=960	84%
RefSeq	Arabidopsis thaliana	NP_190378.2	H(+)-ATPase 4 [Arabidopsis thaliana]	84%
RefSeq	Populus trichocarpa	XP_002318614.1	autoinhibited H+ ATPase, partial [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQS1

Fln msg: Overlapping hits, possible frame ERROR between 204 and 194, your sequence is shorter than subject: 709 - 955

Fln protein: RRDLGCHSGMAVEIIVQYPIQGRPYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAxxxxxMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTAVEVFAKGVDKDALLLMAARASRIENQDAIDAAVVGVLADPKEARAGIQEVHFLPFNPTDKRTALTYIDREGRMHRVSKGAPEQILALAHNKSEIQRRVHTVIDKYAERGLRSLAVAYQEVPDGKKESPGGPWQFIGLMPLFDPPRMDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQAKDAAAEAVNIDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVVGFMLLALIWRFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDNWNLSEIFATGIIIGSYLAMMTVIFFWVTFKTDFFPRTFGVSSLHIPSEENTQKLNSAVYLQVSTISQALIFVTRSRSWSFVERPGLLLVTAFAVAQLAATLIAVYLDLDFASIRGIGWGWAGVIWLYNIIFYFPLDLIKFAIRYAISGRAWDLLIQQRVAFTTQKDFGREAREIKWAHAQRTLHGLQTPDTKLFGDRSSFRELNQMAEEAKRRAEIARLREINTLKGHVESVVRLKGLDINTIQQSYTV*

Protein Length: 710

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCATGGCAGTGGAAATTATTGTCCAGTATCCAATACAAGGCCGACCATATCGGCCTGGAATTGACAATCTGTTGGTGCTTCTTATTGGTGGGATTCCAATAGCAATGCCCACAGTTCTTTCTGTCACTATGGCCATTGGTTCACATCGCCTTTCTCAACAGGGTGCTxxxxxxxxxxxxxxxATGACTGCTATTGAGGAAATGGCCGGGATGGATGTTTTGTGTAGTGATAAGACAGGAACGCTAACATTGAACAAGCTTACTGTAGACAAAACCGCAGTTGAGGTATTTGCAAAAGGAGTTGATAAGGATGCGCTTCTCTTGATGGCTGCAAGAGCATCCAGAATAGAGAACCAAGATGCGATTGATGCAGCTGTTGTTGGGGTTCTTGCTGATCCTAAAGAGGCGCGGGCAGGTATTCAAGAGGTTCATTTTCTTCCTTTCAACCCAACTGACAAACGGACTGCACTCACCTATATTGATAGGGAAGGAAGGATGCATAGAGTTAGCAAAGGTGCACCTGAGCAGATCCTTGCCCTAGCACACAACAAGTCAGAAATTCAACGCAGAGTCCATACAGTGATAGACAAGTATGCTGAACGTGGACTTCGTTCTCTTGCAGTTGCCTATCAGGAGGTACCAGATGGCAAGAAGGAAAGTCCAGGAGGACCCTGGCAATTTATTGGTCTCATGCCTCTTTTTGATCCTCCACGCATGGACAGTGCAGAAACAATAAGAAGGGCTCTCGATCTGGGTGTGAGTGTTAAAATGATCACAGGAGATCAGCTAGCTATAGGCAAGGAGACAGGCCGTCGATTGGGGATGGGTACAAACATGTATCCTTCATCATCATTACTAGGTCAGGCCAAAGATGCTGCCGCTGAAGCTGTAAATATTGATGATTTGATTGAGAAGGCTGATGGTTTTGCTGGTGTCTTCCCCGAGCACAAATATGAGATAGTTAAACGACTGCAAGCAAGGAAACACATTTGTGGCATGACCGGTGATGGAGTCAATGATGCACCGGCACTTAAGAAGGCAGATATAGGAATTGCTGTTGCAGATGCAACGGATGCAGCCCGAAGTGCATCTGATATTGTTCTTACAGAACCAGGCTTGAGTGTTATCATTAGTGCTGTGTTAACAAGCCGTGCAATCTTTCAACGCATGAAGAATTACACTATTTATGCTGTATCGATAACAATACGTATTGTGGTTGGTTTCATGCTTTTGGCATTAATATGGAGGTTTGACTTTCCACCATTCATGGTACTGATAATTGCTATATTAAATGATGGTACCATAATGACAATCTCAAAAGACAGGGTGAAACCATCACCTCTGCCAGATAACTGGAACCTTTCAGAAATTTTTGCCACAGGGATTATTATTGGCAGTTACCTAGCAATGATGACCGTCATCTTTTTCTGGGTCACCTTCAAGACAGATTTCTTTCCAAGAACATTTGGTGTTTCTAGTCTTCATATTCCCAGTGAAGAAAATACTCAGAAACTAAATTCTGCAGTGTATCTTCAAGTCAGCACTATAAGTCAGGCTCTCATATTTGTCACTCGATCTAGAAGCTGGTCTTTTGTAGAGCGTCCTGGCCTGTTGCTAGTAACTGCATTTGCCGTTGCTCAATTGGCTGCAACATTAATTGCTGTCTATTTAGACTTGGACTTCGCTTCTATAAGGGGCATTGGCTGGGGGTGGGCGGGGGTAATATGGCTTTATAACATAATCTTTTACTTTCCACTTGATCTTATCAAGTTTGCAATTCGTTATGCCATCAGTGGAAGGGCATGGGATTTACTGATTCAGCAAAGGGTTGCCTTTACCACCCAGAAGGATTTTGGGAGAGAGGCCAGAGAGATAAAATGGGCTCATGCTCAGAGGACTTTGCATGGATTACAAACACCAGACACGAAACTGTTTGGTGACAGAAGCAGCTTCAGGGAACTCAATCAAATGGCTGAAGAGGCAAAAAGACGTGCTGAAATTGCAAGGCTGAGAGAGATAAATACTTTGAAGGGGCATGTGGAATCTGTCGTAAGACTCAAGGGTTTGGATATTAATACAATTCAACAGTCTTACACTGTTTGAGGGATGCCATTTTTTCTACTTTCATAATGTAGAAAGAATCAAATAGCATCTACACTCCAAGTGAAAAGAAATTTTAGTGCTATGTGAAAAGAAATTTTAGTGCTATGAATTATTACACTTGGATTATGGTGGTGATAAAAGAGTGGAAATCGTTCTTCCATTCATTGGAGTTGAGTCTTGTCTTGACTAAATCAAGATTTGAAAAATGTCAAAAAAGTTTGTTAGTTGTATTAGGATGGAGTATATTACTATATATTTTAAAATGGGTTATTTCACCATAAGTTTAAACTCTACAAATTGCCATCTTGGCCAGTGCAATGGAGTGGGGCCGAACCCCTTTGCCATATTGGCATGTACAAGTAGGCACAACTAAAAGATTGTCCAATTTTGAAAGTTTATGTACATTTTATGCTGGTCCAATATAACTTTGCGTCCGTTTATTTTACCC

Fln Alignment:

Contig9214___GMAVEIIVQYPIQGRPYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAxxxxMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTAVEVFAKGVDKDALLLMAARASRIENQDAIDAAVVGVLADPKEARAGIQEVHFLPFNPTDKRTALTYIDREGRMHRVSKGAPEQILALAHNKSEIQRRVHTVIDKYAERGLRSLAVAYQEVPDGKKESPGGPWQFIGLMPLFDPPRMDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQAKDAAAEAVNIDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVVGFMLLALIWRFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDNWNLSEIFATGIIIGSYLAMMTVIFFWVTFKTDFFPRTFGVSSLHIPSEENTQKLNSAVYLQVSTISQALIFVTRSRSWSFVERPGLLLVTAFAVAQLAATLIAVYLDLDFASIRGIGWGWAGVIWLYNIIFYFPLDLIKFAIRYAISGRAWDLLIQQRVAFTTQKDFGREAREIKWAHAQRTLHGLQTPDTKLFGDRSSFRELNQMXXXXXXXXXXXXXXXINTLKGHVESVVRLKGLDINTIQQSYTV
B8LQS1______________GIVIEIIVMYPIQHRKYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAxxxxMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKDVDKDHVVLLAARASRVENQDAIDAAIVGMLADPKEARAGVTEVHFLPFNPVEKRTALTYVDAHGKWHRASKGAPEQILDLCHCKEDVRNKVHSVIDKFAERGLRSLAVARQEVPERTKESGGTPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGNDKDASIASLPVDELIEKADGFAGVFPEHKYEIVRRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWRFDFSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGTYLAVMTVIFFWAMHKTDFFPNKFGVR----PIRDSPHELTSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLMTAFIIAQLIATFLAVYADFSFANIKPIGWGWAGVIWLYSLVFYFPLDIFKFAVRYALSGKAWDNLIERKTAFTSKKDYGKEEREAQWAHAQRTLHGLHPPETHLFNERSSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDIDTIQQSYTV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
881	75		25		0.996473
1059	83		16		0.994512
1154		12		87	0.992554
1194	87		12		0.992554
1470	20		80		0.995493
1824	16		83		0.994512
2192	90		10		0.90298
2274	60	40			1.0
2277		60		40	1.0
2358	14			85	0.993533
2359	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain