SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9190

Length: 1999 nt

UniGene Fasta

>sp_v3.0_unigene9190
ATGGGGGTGGCGAAAATGGCCCAGCTGAAAATTGCGTGTGTAAAGATACACGGCTTTATTTATTCTTTAACAAATGGTGCATCTCTTCATCTGACTTTCGCTATTATTCTTCGACGGCATAAGCCTCTGCCTCTTCGACCGTGAACGAATAAATGAAAGAAGAACAATGAAACAACCCACCTACTGCTCCTGGCATCCGCAGTTGCAGAACTTATATTCCAAGTTGGCTTTTAAAACAAAATTTTTAAGTGGAATACAATCACGCAGATATGAGCTTTTGTTGCTTTGATTCCTTCTGGAAGAAGAAAACATCAAAAGATCAAGCACCACAAAATGAAATAGGGGATGTCATTTCAAGCATTCCAGATGTTAAGGTTTATCCATATGCCGAGTTGAAAATTGCAACAAACATATTTAACGTGGATAACAAGATAGGGTCAGGTGGCTTCGGCAGTGTGTACAAGGGAACCCTCAAGGATGGCACAGTGGTAGCAGTAAAACAACTGTCTGCACAATCAAAACAAGGTGTTAAAGAGTTTCTAACTGAGATAGCTACAATCTCCGACGTGCAACATGAAAATCTCGTGAAGCTTCATGGATGCTGTGCAGAAGAAGGACATCGCATTTTGGTCTATGAGTACCTTGAAAATAACAGCATTTCTCAAGCCTTACTAGGTTCAGATAACACTAGAATGGATATGAATTGGACAATGAGAGCCAAAATCTGCATGGGAACTGCTCGTGGTCTTTCTTATCTTCATGAAGAACTTGTGCCTCACATTGTACACAGGGATATCAAAGCTAGTAATATACTCCTGGACAGAGATCTTAATCCAAAGATTGCAGATTTTGGTCTGGCTAAGCTTTTCCCAGATAATGTTACCCACATTAGTACACGGGTTGCTGGCACAATTGGTTATTTAGCCCCAGAGTATGCCATGCGTGGTCAGTTGACGAAGAAAGCTGACATCTACAGCTTTGGGGTACTTGTACTTGAGATAATTAGTGGCAGAAGTAACACAAAGTCAACTTCAGCAGTCGAGGAGCAATTTCTTTTGGAGTGGACATGGCAACTGAGGGAAGAGAACAGGCTACTAGAAATCGTTGATCCAAGGTTAGAGGAGTATCCGAAAGAAGAAGTATTGCGTTTCATCAAGGTTGCACTTTTGTGCACACAAGCTGCATCAAATTTCAGGCCCTCTATGTCTCAAGTAGTGGCAATGCTGTCAAAAGAGATAAATATTAATGAGAACTTACTGTCACGACCTGGCTTCATCTCAGACTTCAAAAACTTGAAAGTAGCAGCTGGCACAAATAGATCTTCAGCTGGGTCACATTTTCATGCTTTTCATAGCCCTCAAGTGGCAGCATCACACAAGGGAGTTTCATCATCTTCTGCCACGACGTGCAACTCAACAAGCAATGTTAGCAGCTCATGTGCCACTGTCACTCAGTTAGAACCCAGGTGAATGCCAATAATAGATCCTAGCACATGACATTTTGCAGGTGTAGGTGGATACACTTATAAATAAATTTGATGTGTTGTCCTATGTTTCTTTATTTATGGGGGGCAAGTTTGGGGCTGTTACAAAATATTCAATATACTTTTGTTGAATTTGTGTTGGTTAATATTTGTCCTTTGCAGGGAATAGTGAATCCGTGATTTACTTTTGTATGAAAGGATATCTAGGAAATGAAGGGGCCTTACTTTTGTATGAAAGGATACCTAGGAAATGAAGGACCTTAATAAAGCTATCTGCAAGTAGAGAAAAAATCAAAGGATATCCTTATCCACTAGCTCGTTATCCGACAAAACTGGACTAGCTTGTATGTTAATCATATTGGTCAAATTTGGAATTGGAGGTTCCATGATCAACAACTCTGGAACCTGGAGTTTCCTTTGAAAGTAGGTAATATGTAGTCATGCATGTTAATATGGCTTTGCAATGTAAGATTGAGTGGTGTGGAAATGTTTTAATTAAAAGAAAGGTTATTCTCA

Ace file of the UniGene sp_v3.0_unigene9190

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative receptor ser/thr protein [Oryza sativa Japonica Group] gb\|ABF95119.1\| Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G09010.1	Protein kinase superfamily protein chr3:2750285-2752086 FORWARD LENGTH=393	61%
RefSeq	Arabidopsis thaliana	NP_566341.1	protein kinase domain-containing protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002305688.1	predicted protein, partial [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWR4

Fln msg:

Fln protein: MSFCCFDSFWKKKTSKDQAPQNEIGDVISSIPDVKVYPYAELKIATNIFNVDNKIGSGGFGSVYKGTLKDGTVVAVKQLSAQSKQGVKEFLTEIATISDVQHENLVKLHGCCAEEGHRILVYEYLENNSISQALLGSDNTRMDMNWTMRAKICMGTARGLSYLHEELVPHIVHRDIKASNILLDRDLNPKIADFGLAKLFPDNVTHISTRVAGTIGYLAPEYAMRGQLTKKADIYSFGVLVLEIISGRSNTKSTSAVEEQFLLEWTWQLREENRLLEIVDPRLEEYPKEEVLRFIKVALLCTQAASNFRPSMSQVVAMLSKEININENLLSRPGFISDFKNLKVAAGTNRSSAGSHFHAFHSPQVAASHKGVSSSSATTCNSTSNVSSSCATVTQLEPR*

Protein Length: 401

Fln nts: ATGGGGGTGGCGAAAATGGCCCAGCTGAAAATTGCGTGTGTAAAGATACACGGCTTTATTTATTCTTTAACAAATGGTGCATCTCTTCATCTGACTTTCGCTATTATTCTTCGACGGCATAAGCCTCTGCCTCTTCGACCGTGAACGAATAAATGAAAGAAGAACAATGAAACAACCCACCTACTGCTCCTGGCATCCGCAGTTGCAGAACTTATATTCCAAGTTGGCTTTTAAAACAAAATTTTTAAGTGGAATACAATCACGCAGAT_-_ATGAGCTTTTGTTGCTTTGATTCCTTCTGGAAGAAGAAAACATCAAAAGATCAAGCACCACAAAATGAAATAGGGGATGTCATTTCAAGCATTCCAGATGTTAAGGTTTATCCATATGCCGAGTTGAAAATTGCAACAAACATATTTAACGTGGATAACAAGATAGGGTCAGGTGGCTTCGGCAGTGTGTACAAGGGAACCCTCAAGGATGGCACAGTGGTAGCAGTAAAACAACTGTCTGCACAATCAAAACAAGGTGTTAAAGAGTTTCTAACTGAGATAGCTACAATCTCCGACGTGCAACATGAAAATCTCGTGAAGCTTCATGGATGCTGTGCAGAAGAAGGACATCGCATTTTGGTCTATGAGTACCTTGAAAATAACAGCATTTCTCAAGCCTTACTAGGTTCAGATAACACTAGAATGGATATGAATTGGACAATGAGAGCCAAAATCTGCATGGGAACTGCTCGTGGTCTTTCTTATCTTCATGAAGAACTTGTGCCTCACATTGTACACAGGGATATCAAAGCTAGTAATATACTCCTGGACAGAGATCTTAATCCAAAGATTGCAGATTTTGGTCTGGCTAAGCTTTTCCCAGATAATGTTACCCACATTAGTACACGGGTTGCTGGCACAATTGGTTATTTAGCCCCAGAGTATGCCATGCGTGGTCAGTTGACGAAGAAAGCTGACATCTACAGCTTTGGGGTACTTGTACTTGAGATAATTAGTGGCAGAAGTAACACAAAGTCAACTTCAGCAGTCGAGGAGCAATTTCTTTTGGAGTGGACATGGCAACTGAGGGAAGAGAACAGGCTACTAGAAATCGTTGATCCAAGGTTAGAGGAGTATCCGAAAGAAGAAGTATTGCGTTTCATCAAGGTTGCACTTTTGTGCACACAAGCTGCATCAAATTTCAGGCCCTCTATGTCTCAAGTAGTGGCAATGCTGTCAAAAGAGATAAATATTAATGAGAACTTACTGTCACGACCTGGCTTCATCTCAGACTTCAAAAACTTGAAAGTAGCAGCTGGCACAAATAGATCTTCAGCTGGGTCACATTTTCATGCTTTTCATAGCCCTCAAGTGGCAGCATCACACAAGGGAGTTTCATCATCTTCTGCCACGACGTGCAACTCAACAAGCAATGTTAGCAGCTCATGTGCCACTGTCACTCAGTTAGAACCCAGGTGA___ATGCCAATAATAGATCCTAGCACATGACATTTTGCAGGTGTAGGTGGATACACTTATAAATAAATTTGATGTGTTGTCCTATGTTTCTTTATTTATGGGGGGCAAGTTTGGGGCTGTTACAAAATATTCAATATACTTTTGTTGAATTTGTGTTGGTTAATATTTGTCCTTTGCAGGGAATAGTGAATCCGTGATTTACTTTTGTATGAAAGGATATCTAGGAAATGAAGGGGCCTTACTTTTGTATGAAAGGATACCTAGGAAATGAAGGACCTTAATAAAGCTATCTGCAAGTAGAGAAAAAATCAAAGGATATCCTTATCCACTAGCTCGTTATCCGACAAAACTGGACTAGCTTGTATGTTAATCATATTGGTCAAATTTGGAATTGGAGGTTCCATGATCAACAACTCTGGAACCTGGAGTTTCCTTTGAAAGTAGGTAATATGTAGTCATGCATGTTAATATGGCTTTGCAATGTAAGATTGAGTGGTGTGGAAATGTTTTAATTAAAAGAAAGGTTATTCTCA

Fln Alignment:

Contig9190___ADMSFCCFDSFWKKKTSKDQAPQNEIGDVISSIPDVKVYPYAELKIATNIFNVDNKIGSGGFGSVYKGTLKDGTVVAVKQLSAQSKQGVKEFLTEIATISDVQHENLVKLHGCCAEEGHRILVYEYLENNSISQALLGSDNTRMDMNWTMRAKICMGTARGLSYLHEELVPHIVHRDIKASNILLDRDLNPKIADFGLAKLFPDNVTHISTRVAGTIGYLAPEYAMRGQLTKKADIYSFGVLVLEIISGRSNTKSTSAVEEQFLLEWTWQLREENRLLEIVDPRLEEYPKEEVLRFIKVALLCTQAASNFRPSMSQVVAMLSKEININENLLSRPGFISDFKNLKVAAGTNRXXXXXXXXXXXXPQVAASHKGVXXXXXXXXXXXXXXXXXXXXXXQLEPR
A9NWR4______________AAMSFCCLDSFWKRKTSKDQAPHNEIGDVISSIPDVKVYPYAELKIATNIFHLDNKIGSGGFGSVYKGTLKDGTVVAVKQLSAQSKQGVKEFLTEIATISDVQHENLVKLHGCCAEEEHRILVYEYLEKNSIAQALL--DNTRMDMDWTMRAKICMGTARGLSYLHEELVPHIVHRDIKASNVLLDRDLNPKIADFGLAKLFPDNVTHISTRVAGTIGYLAPEYAMRGQLTKKADIYSFGVLVLEIISGRSNTKSTFPLEEQFLLEWTWQLREESRLLDIVDPRLEEYPKEEVLRFIKVALLCTQAASNFRPSMSQVVAMLSKEININENLLSRPGFISDFKNLKVSAGTSRPPARTNLNAFHNAQVTAMHRGVSSSSTTTGNSTSVVSSSPATITQLEPR

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
88		66	33		0.997452
89	66			33	0.997452
95	25	75			0.996473
97			25	75	0.996473
98			25	75	0.996473
99		75	25		0.996473
163	85		14		0.993533
204		14		85	0.993533
1239	90		10		0.90298
1476		87		12	0.999964
1477		87	12		0.999964
1481	87	12			0.999964
1482	87	12			0.999964
1483			12	87	0.999964
1484	87			12	0.999964
1535	88	11			0.923564
1544		12		87	0.992554
1545	14		85		0.993533
1586		83		16	0.994512
1588			83	16	0.994512
1610		20		80	0.995493
1611			20	80	0.995493
1613		20	80		0.995493
1614			20	80	0.995493
1618	80	20			0.995493
1619		20		80	0.995493
1625		20		80	0.995493
1630		20		80	0.995493
1632	80	20			0.995493
1911		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain