SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9183

Length: 1771 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9183

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin-induced protein 2 n=2 Tax=Pinus RepID=Q7XYT5_PINTA	-	-	0.0	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Aux/IAA protein	-	-	1.658e-23	-

Source	Gene names
Sma3	ARG12; ARG13; ARG14; ARG3; ARG4; AUX2-11; AUX2-27; AUX22; AUX22A; AUX22B; AUX22C; AUX22D; AUX22E; AUX28; AXR2; AXR3; At1g04240; At1g04250; At1g15580; At2g22670; At3g04730; At3g15540; At3g23030; At3g23050; At4g14550; At4g14560; At4g29080; At5g43700; At5g65

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	gravitropism	GO:0009630	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Nitrogen regulatory protein P-II, urydylation site	IPR002332	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G04730.1	IAA16 indoleacetic acid-induced protein 16 chr3:1288993-1290415 REVERSE LENGTH=236	59%
RefSeq	Arabidopsis thaliana	NP_187124.1	auxin-responsive protein IAA16 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002319075.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKX2

Fln msg: warning!, putative chimeric sequence! or repetitive structure and possible frame ERROR between 760 and 766,

Fln protein: MGCLRENDDEHSFKETELKLGLPGVTEGSDEHRTGKRTFSEAFMESGNDEKWMSSSSVKSTATAFEMSKSNEQGMLAATPPLSQLQRSFPPLYWKTGIQTDPSRVAxxxxxxQSGNSAHGSEMPPPKAQVIGWPPVRSFMKNSLTFKSKTTEEGASSSSGLYAKPTQTQTTPDSTMAPAPKAQLxxxWPPVRSFRKNTLVVNSTPTENGPSGSALYVKVSMDGAPYLRKVDLKMYSTYHDLSSALENMFGCFSMGKCGSQGLNEKKVMDLLNGSEYVPTYEDKDGDWMLLGDVPWEMFVDSCKRMRIMKVSEAIGLATSMEKCKSKI*

Protein Length: 329

Fln nts: ATGGGGATTATCAATCTGTTTTATACTATTTCTAATGTCAAGATCTGTTTTATACTATTTCTAATGTCAAGCAAATAATGGGCACCGTAGTATAAGTGTCGTGACCTTGGCTGATTGTGTATCGGGAATACACTACAGCATCACTATTTTGGAACAAAGTGGCTTTCATTACTGCAGATCCGAGAGAAAGAAATCTGTGTTTAGCT_-_ATGGGGTGTTTGAGAGAGAATGACGATGAGCACAGCTTCAAGGAGACGGAGCTCAAGCTGGGGCTCCCTGGAGTGACAGAAGGTTCAGATGAGCACAGGACTGGCAAAAGAACTTTCTCAGAAGCTTTCATGGAGTCTGGGAATGATGAGAAATGGATGTCATCTTCTTCTGTAAAATCAACAGCTACTGCGTTTGAAATGTCTAAATCCAATGAACAGGGGATGTTAGCTGCCACACCTCCTCTATCTCAGCTGCAGCGCTCATTTCCTCCACTCTATTGGAAGACAGGTATCCAGACCGATCCCTCCCGGGTTGCTxxxxxxxxxxxxxxxxxxCAATCAGGAAACTCTGCTCATGGCTCAGAAATGCCTCCTCCCAAGGCACAGGTAATTGGTTGGCCACCTGTTAGATCGTTTATGAAAAACAGTTTGACCTTTAAATCAAAGACTACTGAAGAAGGCGCTTCCAGTAGTTCTGGTCTGTATGCCAAACCCACACAAACCCAAACTACACCAGACAGCACCATGGCTCCTGCTCCCAAGGCACAACTAGxxxxxxATTGGCCACCTGTTAGATCTTTCAGGAAAAACACTTTGGTTGTTAATTCAACGCCTACCGAAAATGGGCCTTCTGGTAGCGCTCTGTATGTAAAAGTGAGCATGGATGGAGCCCCCTATCTCAGAAAGGTGGACCTCAAAATGTACAGCACCTATCATGACCTCTCCTCTGCACTCGAGAACATGTTCGGCTGCTTCAGCATGGGGAAGTGTGGATCCCAGGGTTTGAACGAGAAGAAAGTGATGGATCTGCTGAATGGGTCAGAATATGTTCCTACCTATGAAGATAAAGATGGAGATTGGATGCTTCTTGGTGATGTCCCATGGGAGATGTTTGTTGATTCCTGCAAAAGAATGCGTATCATGAAGGTCTCGGAAGCTATTGGTTTAGCTACGTCCATGGAGAAATGTAAAAGCAAGATTTAG___GGTTCACGTATGACCCATTCTCAGGAAGCTGCTTTGCATTTCGATTGATTCAAATAGAACGTCATCTGACAAGATTGGAGCATTAGGGAAAATCATGGCGTCCAAAGTTTTTATCTTGTGACTTTGAAAACCTCAAAAATTGGTGATTTCGCTGAAACGAAGGCAATATAAGCAGGACACAATGGATCTGCTATCGAACTGGAAGATTTGGGAACCATCCTGGCAATCTTTCTATTTCTGATACATTCTTAGCTAGGATTCACTTGTTGATTTATTAATCTCAAACAACAAATCTGGATTTCTGTCTCAACAAGTACTGAATAATGGAAGACCAGCCTCATCCCAGTGCAGGCTTATGACAGTGGGTTAAGGATTCAACATGTTAACTTCTCTTAAATTCCAACGTTCTGAAAGGCAACGTTAGCCCTTGAACTGTAAAACTGTAATTTGCGATTAGGCATAATGACACTTGGGTATATTCATTTCTGTAGCTCAAGAGCTGCTGGTCATGGAAACGAACATTGCTCAATTGTAATGTATATAAGATTACAGATTCATCATTGAAGAAGGTGTTGGTATAAGT

Fln Alignment:

Contig9183___MGCLRENDDEHSFKETELKLGLPGVTEGSDEHRTGKRTFSEAFMESGNDEKWMSSSSVKSTATAFEMSKSNEQGMLAATPPLSQLQRSFPPLYWKTGIQTDPSRVALxxxxKQSGNSAHGSEMPPPKAQVIGWPPVRSFMKNSLTFKSKTTEEGASSSSGLYAKPTQTQTTPDSTM------APAPKAQLVxxWPPVRSFRKNTLVVNSTPTENGPSGSALYVKVSMDGAPYLRKVDLKMYSTYHDLSSALENMFGCFSMGKCGSQGLNEKKVMDLLNGSEYVPTYEDKDGDWMLLGDVPWEMFVDSCKRMRIMKVSEAIGLA-TSMEKCKSKI
B8LKX2______________MGSLREHDDEQSLKETELKLGLPGVTEGS-EHRTGKRTFSEAFMESGNDEKWVVSSSVKSV-TAFETSKPNEQGMLATPLAQKMMQRSFPPLSWKAGIQTDPSGVAVxxxxKQLGNSANDSEMPPPKAQAIGWPPVRSFRRNTLAFNSKTTEEGSSNSSDLYAKATQSQTTPDTTMASAPATAPVPKAQVVxxWPPVRSFRKNTLVANSTPTENGPSGNAMYVKVSMDGAPYLRKVDLKMYSTYHDLSSALEKMFSCFSMGKCGSHGLNENKLMDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVDFCKRMRIMKVSEAIGLAPRAMEKRKNRI

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
190	25		75		0.996473
192	80		20		0.995493
193	80			20	0.995493
198	20			80	0.995493
209		10	90		0.90298
351			90	10	0.90298
525		87	12		0.992554
613	12		87		0.992554
614	12			87	0.992554
616	87		12		0.992554
617			87	12	0.992554
621	37		62		1.0
635	11		88		0.923564
637			11	88	0.923564
1477	13	80			0.999961
1507		26		73	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain