SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9182

Length: 1281 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9182

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase n=1 Tax=Pinus sylvestris RepID=Q9FEU2_PINSY	-	-	0.0	97%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	97%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	1.90703e-41	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	1.979e-24	-
Sma3	Receptor protein-tyrosine kinase.	EC:2.7.10.1	-	1.305e-07	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	2.15e-20	-
Sma3		EC:2.7.11.3-	-	9.859e-07	-

Source	Gene names
Sma3	AT1G08590; AT1G09970; AT1G17750; AT1G28440; AT1G31420; AT1G34110; AT1G55610; AT1G73080; AT1G75820; AT2G33170; AT2G35620; AT3G13380; AT3G49670; AT4G20270; AT4G26540; AT4G28490; AT4G28650; AT4g20270; AT4g26540; AT5G48940; AT5G49660; AT5G61480; AT5G62710; AT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	steroid binding	GO:0005496	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	interspecies interaction between organisms	GO:0044419	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-
Sma3	floral organ development	GO:0048437	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24240.1	Leucine-rich repeat receptor-like protein kinase family protein chr3:8780551-8784150 FORWARD LENGTH=1141	67%
RefSeq	Arabidopsis thaliana	NP_189066.1	receptor-like protein kinase 2 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002304699.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: your sequence is shorter than subject: 297 - 1145

Fln protein: TLGAIRHRNIVRIRGCCTNGRSKLLMYDYMPNGSLGGLLHEKRSMLDWEIRYNIVLGAAQGLSYLHHDCRPPILHRDVKANNILLGSQYEPYLADFGLAKLVDSADFNRSSTTVAGSYGYIAPEYGYTMKITQKIDVYSFGVVLLEVVTGKQPIDPTIPEGVHLVEWARDAVQSNKLADSAEVIDPRLQGRPDTQIQEMLQVLGVAFLCVNSNPDERPTMKDVAALLKEIRHDCHDYNGKADLLLKQTPAPGSTRSPNPTADARSPVGSSFGLEYSSASTTAHQSYSLHSSVSNVI*

Protein Length: 298

Fln nts: CAACTCTGGGCGCCATCCGCCATAGAAATATCGTTCGGATCCGCGGGTGCTGCACAAACGGGCGATCGAAGCTTTTGATGTACGATTACATGCCCAACGGGAGCTTGGGCGGGCTCTTGCACGAGAAGAGAAGTATGCTGGATTGGGAAATTAGGTATAACATAGTGCTGGGAGCTGCGCAGGGGTTGTCCTATCTGCATCATGATTGCAGGCCGCCCATACTCCATCGAGATGTTAAGGCCAATAATATATTGTTGGGCAGTCAGTATGAACCTTATCTCGCAGACTTTGGTCTCGCCAAGCTTGTGGATTCAGCAGATTTCAATAGATCTTCGACAACAGTAGCTGGATCTTATGGCTACATAGCTCCTGAATACGGATACACCATGAAAATAACGCAGAAAATCGATGTGTACAGTTTCGGCGTGGTTCTGTTGGAGGTGGTAACCGGAAAGCAGCCCATCGACCCGACCATTCCCGAAGGCGTTCATTTGGTGGAGTGGGCGCGAGACGCAGTGCAGAGCAACAAGCTGGCCGACTCGGCAGAGGTAATCGATCCGAGACTCCAAGGCCGGCCCGACACACAGATCCAAGAAATGCTGCAGGTGCTGGGCGTCGCCTTCCTCTGCGTCAATTCCAATCCCGACGAAAGGCCGACCATGAAAGACGTGGCCGCTCTCCTGAAAGAAATCCGCCACGACTGCCATGACTATAACGGCAAGGCCGACCTTCTGCTCAAACAAACTCCTGCGCCCGGCTCGACCCGGTCACCGAACCCTACCGCGGACGCCCGATCTCCCGTAGGGTCCTCCTTCGGGCTCGAGTACTCTTCGGCTTCGACAACCGCCCACCAATCCTATTCGCTGCATTCTTCGGTTTCCAATGTAATTTGA___ATATAGCATTAATGCATTTGATCAAATTTAATATGTGAGCAAGGCATTACATAAAATTAGAGTAGTCAATGTAAAATTGTTAGCCATTATTCTTGGAGCCCATACGTCGAGTTCCAGTCATGCAGTTATTCTTATGAGAGAACAATGTAGTGTAGGGTGGTTTAATTAGGAGGAGGATCCGACATCTGATACATCTCTCCAGGAGGTATCAACAACTATGTAAAATGGGGCAATACACACAATTGTATTCATATATAGTACACAGCTCGGGACCGGACCGCTTATTAGAACAGCAGCATCTATTTTGATTTGGTGAATAGCATAGTAAAATCAAGAGAACACTGAGGAAACACACTTTCCTTTCCTTACAGGTTCATAATAAACTGGT

Fln Alignment:

Contig9182___TLGAIRHRNIVRIRGCCTNGRSKLLMYDYMPNGSLGGLLHEKRSMLDWEIRYNIVLGAAQGLSYLHHDCRPPILHRDVKANNILLGSQYEPYLADFGLAKLVDSADFNRSSTTVAGSYGYIAPEYGYTMKITQKIDVYSFGVVLLEVVTGKQPIDPTIPEGVHLVEWARDAVQSNKLADSAEVIDPRLQGRPDTQIQEMLQVLGVAFLCVNSNPDERPTMKDVAALLKEIRHDCHDYNGKADLLLKQTPAPGSTRSPNPTADARSPVGSSFGLEYSSASTTAHQSYSLHSSVSNVI
Q9FEU2______________TLGAIRHRNIVRLLGCCTNGRSKLLMYDYMPNGSLGGLLHEKRSMLDWEIRYNIVLGVRRGLSYLHHDCRPPILHRDVKANNILLGSQYEPYLADFGLAKLVDSADFNRSSTTVAGSYGYIAPEYGYTMKITQKIDVYSFGVVLLEVVTGKQPIDPTIPEGVHLVEWARDAVQSNKLADSAEVIDPRLQGRPDTQIQEMLQVLGVAFLCVNSNPDERPTMKDVAALLKEIRHDCHDYNGKADLLLKQTPAPGSTRSPNPTADARSPVGSSFGLEYSSASTTAHESYSLHSSVSNVI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
241	14		85		0.993533
445	33		66		0.997452
474		66		33	0.997452
772		80		20	0.995493
833		80		20	0.995493
866	16			83	0.994512
885		11		88	0.923564
1025		86		13	0.999973
1096		14	85		0.999981
1182		14	85		0.993533
1187	25		75		0.996473
1188	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain