SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9180

Length: 1513 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9180

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein RABB1c n=13 Tax=Spermatophyta RepID=RAB1C_ARATH	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Sma3	Rab2-like protein	-	-	-

Source	Gene names
Sma3	rab2; AT4g17170; dl4620c; At4g17170;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17170.1	AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B RAB GTPase homolog B1C chr4:9644908-9646220 REVERSE LENGTH=211	90%
RefSeq	Arabidopsis thaliana	NP_193450.1	RAB GTPase homolog B1C [Arabidopsis thaliana]	90%
RefSeq	Populus trichocarpa	XP_002308739.1	predicted protein [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU85

Fln msg:

Fln protein: MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLANWLEDARQHANANMTIMLIGNKCDLSHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFISTASMIYQKIQEGVFDVSNESYGIKVGYGGVSGAAGGAGRDASTSQSGGCCG*

Protein Length: 215

Fln nts: TACATGGGGGCAACGAAATACATTACTAAAAAGTAAAGCCGAATGGATGTCGCCTTCCAGAAGCAAAGTTTGATCTGTGGCCATAAGGAATCCCCCCTTTCCATCATTGCAACTTATTTAGGAAATATGTTGATAAAACCCAGTTATACGATGTATATGTAACACATCACCGGATCTATAAAGAAATTGTTGAAGATACACCCAAGGGTTTGGAGTTTATATCACCTCAAACTTGTTTTATTTTGGATCTCTCTTATAGCCTGATCAGATCTCTAGGTTAACAGCTTTTTGAACTTTGTGGGTATTGATATTGAAGCCCTTTATAGCCGTGGAAGGAAGTATAATTCTGTGATCTGTGTGTTCACATTTCTCTATATTTCCTTTGAAGGGATTGGACCCAGGGCCTTGCAGAAGTCTTTGATTGATCTGGAAG_-_ATGTCTTATGCTTATCTCTTCAAGTACATAATTATCGGAGATACAGGGGTGGGTAAATCATGTCTTCTCCTCCAGTTCACTGATAAGAGATTCCAGCCTGTCCACGACTTGACAATTGGTGTGGAGTTTGGTGCTCGCATGATTACCATTGATAACAAACCAATAAAACTTCAAATCTGGGACACGGCTGGACAGGAGTCATTTCGATCCATCACAAGATCTTATTACAGAGGAGCAGCTGGAGCGTTACTGGTTTATGACATCACAAGGAGAGAAACCTTCAATCATCTCGCAAACTGGCTAGAGGATGCTCGCCAACATGCAAATGCAAATATGACGATAATGCTTATAGGGAACAAGTGTGATCTTTCTCACAGGAGAGCGGTGAGCACAGAGGAGGGTGAGCAGTTTGCAAAAGAACATGGTCTGATATTTATGGAAGCTTCAGCAAAAACTGCTCAAAATGTTGAGGAGGCATTTATAAGCACCGCTTCAATGATATATCAGAAAATTCAGGAAGGTGTCTTTGATGTGTCGAACGAGTCATATGGTATCAAAGTTGGATATGGAGGTGTCTCTGGTGCAGCTGGTGGTGCAGGCAGAGATGCTTCTACATCTCAAAGTGGAGGCTGTTGTGGTTAA___GTATTCGAGATAGAAACATTCCAGATCTAGACAGTTCCCTTCTATTGATTGCAGGCTTCAAAGCCAGCTTTGTTTATGAGATTCGTATCTCAAGGCATAAGTTATGAAATTGTACAGTGGAGCATCTGCAGTTAGACTAAACAGTTGGTGGGGAAGTATTAAGATTTCCGCAGCTGTCTAATTGATACCTTGATCTGCAGTCATTATTTATGTGCAAAATCATTAGGGTTGTGGATGAGCCAGTATTTGGCATATCATCTGTATATGTTCTTAATGTACATTTTAACAGATGCTAGGGGTATAAATCTTGGATATCCTGTCTTCTGTGCATCTCACTGGCTTTATTTGTTCTGAAGCTTTGCTAATTGTTTCTTTCTTCCCCTTACTGGTGCTGCAATATTTTCATTTATCTGATGGACATTCATGGTTTTAGTCTAG

Fln Alignment:

Contig9180___MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLANWLEDARQHANANMTIMLIGNKCDLSHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFISTASMIYQKIQEGVFDVSNESYGIKVXXXXXXXXXXXXXRDASTSQSGGCC
A9NU85______________MSYAYLFKYIVIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIGNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLATWLEDARQHANSNMTIMLIGNKCDLDHRRAVSTEEGAQFAKEHGLVFMETSAKTAQNVEEAFINTAAKIYQKIEEGIFDVSNETSGIKVGYGGGAGTAGSVRNDYTAPQSSGCC

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
142	25	75			0.996473
143		75		25	0.996473
144	75		25		0.996473
146			25	75	0.996473
147			25	75	0.996473
155	20		80		0.995493
156		20		80	0.995493
159	80		20		0.995493
160			20	80	0.995493
162			20	80	0.995493
181		20		80	0.995493
269	85		14		0.993533
273		85		14	0.993533
303	25		75		1.0
340	90		10		0.90298
1393	10	89			0.999919
1407	87	8	4		0.999414
1455		18		72	0.999994
1459	20	80			0.999996
1460	12	12		75	0.975346
1461	14			85	0.993533
1511	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain