SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9171

Length: 1378 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9171

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative calcium-binding protein CML16 [Arabidopsis thaliana] sp\|Q9LI84.2\|CML16_ARATH RecName: Full=Probable calcium-binding protein CML16; AltName: Full=Calmodulin-like protein 16 gb\|AAO41975.1\| putative calmodulin [Arabidopsis thaliana] gb\|AAT41852.1\| A	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G25600.1	Calcium-binding EF-hand family protein chr3:9307367-9307852 FORWARD LENGTH=161	63%
RefSeq	Arabidopsis thaliana	NP_189188.4	putative calcium-binding protein CML16 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002304353.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZA3

Fln msg:

Fln protein: MGCEKSLSEEQIEELKEIFARFDLDSDGSLTQLELGGFLRSLGLKPSGEQIDALIKRVDTNNNGLIEFPELVSLIAPGVTAEVSNNQEQLMELFRSFDRDGNGYITAAELARSMAKMGHALSFRELTEMIAEADTDGDGRISFAEFTAAVTSASVDYLKASLM*

Protein Length: 165

Fln nts: AAAATGACGTTCCCGGGTCTCAGAAACTCCAAAAGTCGCCATGAATTTTGCTAAGAAAAATTCAACGCGGATGTATACCTACAACTGTCGGGGCCCACCATGGAACTGGTCTCGCTGTATCCCTTCTTTCTCGAAGGCTGGAATGCATGAGGAAGGAAACAACTGACAGGCAACCGTTGCAGCCTCCAGGTCAAGAAGAATCATTCCAACCCTATGCTCCCTTGCCGGGAAGGCTCTCATCGCAAATTCCAAGCACAATCCCCACAGAGAGGGCCGTATTATAATGCCCGCCCTTTGATTTTCAATCGACACAGATAATTCGCATTGCGTTATGGACTGTTGCGGGAAGGAACGGACGCGCTGATACAACACAGTTGCTAAGATTGTCGCTGGGACTGGAGTTCTCTGTTTTATCACTAGAAAGGTCGGGGAACCGCAGATTTTCGGAGGCCAAATCCCC_-_ATGGGCTGCGAGAAAAGCCTCTCAGAGGAGCAAATAGAGGAGCTAAAGGAGATCTTTGCGAGGTTCGATCTTGACTCAGACGGAAGCCTGACGCAATTAGAGCTGGGGGGCTTTCTGAGATCTCTGGGACTGAAGCCCAGCGGCGAACAGATAGATGCCCTAATCAAGCGCGTGGATACAAATAACAATGGGCTGATAGAGTTCCCGGAACTGGTGAGCCTGATCGCCCCCGGTGTAACGGCAGAGGTTTCGAATAACCAGGAGCAGCTGATGGAGCTGTTCCGCTCCTTTGACAGGGACGGTAATGGCTACATTACGGCGGCCGAGCTCGCGCGGTCCATGGCCAAGATGGGCCATGCCCTGTCTTTCCGAGAGCTCACTGAGATGATTGCCGAGGCTGATACGGATGGGGATGGAAGAATAAGCTTTGCAGAATTCACCGCTGCCGTCACTTCTGCTTCGGTCGATTATCTCAAAGCATCTTTGATGTAA___ATAAAAATAGGGTTCGTGTTTCTGTCTGTCTGCGGATCTGCGTTTTATAAATTGTAATTATTATGTTATCTGGCAGGAAATATGTTTTGGCTTACCATTCTTTTGTGGATTTCTATGGGCTGGGGTTTAACTTAATTTTGGGCCAGGACCGAATTCTGGCCCATTGTTAAATTACTTTCAGAGATTGCTCTGCTACAATAGGTAGGCCTAGGGACAAAGAACCGGTGACTTATTCTTTATCGATGTTGAGTTGCCCGCTGGCTTTAGACCAGGGCCCGAATATGAGATATTTGGGCGGCTGTATGATTTTTTATATGTTATGTTGTCAATGTCTCATTTTGAATGAAGTGCGAAGTGTCAGTGTTTCATTGGTGTATTATGGGAAAATCAAAATAAAAATCAGAACATGTGTTGATTGCTGATATT

Fln Alignment:

Contig9171___MGCEKSLSEEQIEELKEIFARFDLDSDGSLTQLELGGFLRSLGLKPSGEQIDALIKRVDTNNNGLIEFPELVSLIAPGVTAEVSNNQEQLMELFRSFDRDGNGYITAAELARSMAKMGHALSFRELTEMIAEADTDGDGRISFAEFTAAVTSASVDYLKASLM
A9NZA3______________MGCEKSLSEEQIEELKEIFSRFDLDSDGSLTQLELGGFLRSLGLKPSGDQIDALIKRVDTNNNGLIEFPELVSLIAPGVTEEVSNNQEQLIELFRSFDRDGNGYITAAELARSMAKMGHALSFRELTEMMAEADTDGDGRISFAEFTAAVTSASVDYLKAALM

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
150	66		33		0.997452
151			33	66	0.997452
192			80	20	0.995493
194			20	80	0.995493
195		80	20		0.995493
313		87		12	0.992554
342	11		88		0.923564
445		12		87	0.992554
451	88	11			0.923564
454		88	11		0.923564
573		11	77		0.968132
574		88	11		0.923564
580		16	83		0.999991
1178		83	16		1.0
1192		6		93	0.999364
1309	88		11		0.923564
1321	14			85	0.993533
1322		85	14		0.993533
1339	75			25	0.996473
1346	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain