SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9153

Length: 1671 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9153

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9SCH9_RICCO	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Acyl:coa ligase	-	-	1.19e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing).	EC:1.13.12.7	-	1.955e-31	-
Sma3	Ligases, Forming carbon-sulfur bonds, Acid--thiol ligases.	EC:6.2.1.-	-	0.0	-

Source	KEGGs	Term	Type	Identity
Sma3	Geraniol degradation	00281		%
Sma3	Tyrosine metabolism	00350		%
Sma3	Benzoate degradation	00362		%
Sma3	Fluorobenzoate degradation	00364		%
Sma3	alpha-Linolenic acid metabolism	00592		%
Sma3	Aminobenzoate degradation	00627		%
Sma3	Propanoate metabolism	00640		%
Sma3	Ethylbenzene degradation	00642		%
Sma3	Carbon fixation pathways in prokaryotes	00720		%
Sma3	Limonene and pinene degradation	00903		%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		%
Sma3	Biosynthesis of plant hormones	01070		%
Sma3	Metabolic pathways	01100		%
Sma3	Biosynthesis of secondary metabolites	01110		%
Sma3	4-coumarate--CoA ligase.	EC:6.2.1.12	-	-

Source	KEGGs	Term	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	%
Sma3	Phenylalanine metabolism	00360	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	4CL; 4CL-1; 4CL-2; 4CL-2a; 4CL.2; 4CL1; 4CL2; 4CL3; 4CL4; 4CL5; 4CLL1; 4CLL2; 4CLL3; 4CLL4; 4CLL5; 4CLL6; 4CLL7; 4CLL8; 4CLL9; 4cl; ABG-1; ACLL13; ACLL14; ACLL15; ACLL16; ACLL18\|Ptr4CL13; ACLL20; ACLL21; At1g20480; At1g20490; At1g20500; At1g20510; At1g516

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	fatty-acyl-CoA synthase activity	GO:0004321	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	phenylpropanoid metabolic process	GO:0009698	Biological Process	-
Sma3	phenylpropanoid biosynthetic process	GO:0009699	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G05160.1	AMP-dependent synthetase and ligase family protein chr4:2664451-2666547 FORWARD LENGTH=544	53%
RefSeq	Arabidopsis thaliana	NP_192425.1	4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002305282.1	4-coumarate-coa ligase [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNP4

Fln msg: Overlapping hits, possible frame ERROR between 981 and 965, your sequence is shorter than subject: 513 - 540

Fln protein: NVSFMFRNLESYSQRLALADADSGEKLSFREFKDKVSMVGSGLNQLGIRKGDVVLLLSPNSIYVPVCFFGIVSIGAVATTVNPLYTAMEVAKQVRDSKPKLIITVTELWDKVEGLNLPAVVIGGDLCHKRFPNSPIISFSEFLTMGAQKNPPDVIIKQTETAALLFSSGTTGASKGVVLTHRNFIATALMVTSDQERKGERHTVLCVLPMFHVFGLAVITNAQLQRGNTVVSVGRFTMESMLKAIEEYKVTYFPVVPPIVIAIAKEKMVARYDLSSLKEVVSGAAPLGKDIMEECAKIIPHAAILQGYALTESCDIATLNSxxxxxxxFGSGGILAPGIEAKVASLKTGRPLPPNQRGELWFRGPNIMQGYFNNPSATKSTLDEEGWLHTGDLGYFDEDGGLYIVDRIKEIIKVKGYQVAPAELEALLLTHSQIVDAGVIPFPDPNSGEVPIAYVVRSPGSSLIEKDVMDYVAKQVAPYKRLHRINFVNSIPKSSAGKILRRELVAKAKSKL*

Protein Length: 514

Fln nts: AATGTCTCTTTCATGTTCAGAAATTTGGAATCCTATTCTCAGAGATTAGCTCTGGCAGATGCAGATTCCGGGGAGAAACTGAGTTTCAGGGAATTCAAAGACAAGGTAAGCATGGTGGGTAGTGGATTAAACCAGTTGGGTATTAGAAAGGGAGACGTGGTGCTGTTACTTTCTCCTAATTCCATTTATGTACCTGTTTGTTTCTTTGGGATTGTTTCAATTGGGGCTGTGGCAACTACTGTGAATCCATTGTATACTGCCATGGAAGTGGCTAAACAAGTCAGGGATTCAAAACCCAAGCTCATCATTACTGTCACAGAGCTCTGGGATAAAGTTGAGGGTCTGAATTTACCTGCAGTAGTCATTGGGGGGGATCTATGTCACAAGAGGTTCCCCAACTCACCCATTATTTCATTTTCTGAGTTCTTAACCATGGGTGCCCAGAAGAACCCACCTGATGTCATTATCAAGCAGACAGAGACAGCTGCCCTGCTGTTTTCCTCTGGGACTACTGGGGCCAGCAAAGGGGTGGTTTTAACCCATAGGAATTTCATTGCAACTGCTTTAATGGTGACCAGTGACCAGGAAAGGAAGGGTGAGAGGCATACAGTCTTATGTGTCCTTCCCATGTTTCATGTCTTTGGGCTCGCTGTGATAACGAATGCGCAGCTTCAGAGAGGAAATACTGTGGTTTCAGTGGGGAGATTTACTATGGAGAGCATGCTGAAAGCCATAGAAGAGTACAAGGTGACTTATTTTCCTGTGGTGCCACCCATTGTGATTGCCATTGCAAAAGAGAAGATGGTGGCACGATATGATCTGTCTTCTCTGAAGGAGGTTGTCAGTGGAGCAGCGCCCCTCGGAAAGGATATCATGGAAGAGTGCGCCAAAATAATCCCGCATGCTGCAATACTTCAGGGTTATGCCCTAACTGAATCGTGTGACATTGCAACACTCAATTCGxxxxxxxxxxxxxxxxxxxxxTTTGGATCAGGTGGAATATTAGCTCCAGGCATTGAAGCAAAAGTTGCAAGTCTAAAAACAGGGAGGCCTCTTCCTCCAAATCAACGAGGAGAGTTGTGGTTTCGTGGGCCTAATATTATGCAGGGATACTTTAACAATCCCAGTGCAACTAAAAGTACACTTGATGAGGAAGGTTGGCTACATACTGGAGATTTGGGTTACTTTGATGAGGATGGAGGCTTATATATTGTGGATCGTATCAAAGAAATAATCAAAGTCAAAGGTTACCAGGTTGCTCCTGCTGAGTTGGAGGCATTGTTGTTGACACATTCCCAAATTGTAGATGCTGGAGTTATTCCCTTTCCTGATCCAAACTCTGGAGAGGTTCCAATAGCATATGTTGTACGCAGCCCTGGAAGCTCTTTGATAGAGAAAGATGTCATGGATTACGTAGCCAAGCAGGTAGCGCCATACAAAAGGTTGCATAGGATAAATTTTGTAAACTCTATACCCAAGTCTTCTGCAGGGAAGATTCTGCGACGAGAGCTTGTTGCAAAGGCAAAATCAAAGTTATAACCATAAAAAAAACTATAAGATTCAAGGATACTTGTAACATTAATGTAAAGCCTATTTTAAATTATCATAGGCATAAATGCCCCATTCTTATCATTAATGGCCTCTTGGCCTCTCTATTCTTGAAGAGTATTAAC

Fln Alignment:

Contig9153___VSFMFRNLESYSQRLALADADSGEKLSFREFKDKVSMVGSGLNQLGIRKGDVVLLLSPNSIYVPVCFFGIVSIGAVATTVNPLYTAMEVAKQVRDSKPKLIITVTELWDKVEGLNLPAVVIGGDLCHKRFPNSPIISFSEFLTMGAQKNPPDVIIKQTETAALLFSSGTTGASKGVVLTHRNFIATALMVTSDQERKGERH-TVLCVLPMFHVFGLAVITNAQLQRGNTVVSVGRFTMESMLKAIEEYKVTYFPVVPPIVIAIAKEKMVARYDLSSLKEVVSGAAPLGKDIMEECAKIIPHAAILQGYALTESCDIATLNSKxxxxxHFGSGGILAPGIEAKVASLKTGRPLPPNQRGELWFRGPNIMQGYFNNPSATKSTLDEEGWLHTGDLGYFDEDGGLYIVDRIKEIIKVKGYQVAPAELEALLLTHSQIVDAGVIPFPDPNSGEVPIAYVVRSPGSSLIEKDVMDYVAKQVAPYKRLHRINFVNSIPKSSAGKILRRELV
B8LNP4______________VSFMFRDSSSYADKLALADADSGEKLSFRDFKDKVSMVGSGLSQLGIRKGDVVLLFSPNSIHVPPCFLGIVSIGAVATTVNPLYTAMELAKQVQDSQSKLIITVPELWDKAKDLGLPAIVIGRKGDSKR-ASSPTISFFEVLTMGAQKNPPEVIIEQTDTAALLYSSGTTGTNKGVVLTHRNFIASALMVISDQELEGERHLTHLCLVPMFHVYGLGCIVYGQLQRGNAVVSMGKFTFVRMLEAIQEYKITHLPLVPPIVIAVAKENIVARYDLSSLKKVMSGAAPLGKDIMEECAKRIPQAAVTQGYGLTESCGIATITFPxxxxxHFGSAGTLVPGLEAKIVNLETGRSLPPNQSGEVWLRGPNIMTGYFNNPNATKMTLDKEGWLHTGDMGYFDDEGGLFIVDRIKELIKYKGFQVPPAELEGLLLTHPQIVDAGVIPLPDLNAGEVPIAYVVRTPGSSLTEKDVMAYVAKQVAPFKRLHRINFVDSIPKSSSGKILRRELI

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
316		66	33		0.997452
341	20		80		0.995493
342	20		80		0.995493
344		80	20		0.995493
372		20	80		0.995493
378		20		80	0.995493
436		25	75		0.996473
469		75		25	0.996473
542	25	75			0.996473
545	75		25		0.996473
724		66	33		0.997452
842	25		75		0.996473
866		66		33	0.997452
1149		25		75	0.996473
1186	20			80	0.995493
1269		20		80	0.995493
1284	25		75		0.996473
1290	25		75		0.996473
1305		83		16	0.994512
1345	83		16		0.994512
1397	14			85	0.993533
1398		12	87		0.992554
1401	87			12	0.992554
1431			57	42	1.0
1461	25		75		1.0
1542	20		80		0.995493
1553	66			33	0.997452
1554	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain