SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9146

Length: 2235 nt

UniGene Fasta

>sp_v3.0_unigene9146
ATGGGGACCACAGCTCCTGCAATAGCCTTGAGAACTGAAAATTTTCTTTATCTCATTGGATTTACAAGTTGCAGATCTGCCGTTAATCTCAATGGATTTACAGCTGCCGTTTGCCATTGCAGATCTGCGAATGATCGGCTACCTTGTGGTGACCATCATATCGGCTTATCTGATCTGCAGGCGACTTCGTCCTTCTGTGAAATTGCCGCCCGGTCCCCGTGCTTGGCCCATAATCGGGAACCTGAATCTCATGGGGAAATTACCCCACAGGTCGCTGGATCTACTCTCCAAAACATATGGCCCCCTCATGTATATGAGACTCGGATCCATGCCATGCGTGGTCGGCTCATCCGCTGAGATGGCCCGAGAGTTTCTCAAGACCCACGATCTCACATTCTCGTCCCGACCCCGTGTGGCGGCCGGGAAATACACTGTTTACAACTACTCCGACATCACCTGGTCTCCCTACGGAGAGCACTGGCGCCTCGCCAGGAAAATCTGCCTCATGGAGCTCTTCAGTGCCAAACGCCTCGAATCTTTCGAGTACATCAGAGTAGAAGAGGTCGCCCGGATGCTAAGTTCCGTGTTCGAAACCAGCCGGCAGGGCCTCCCTGTAGAAATCAGGGAAGAGACGACTAATGTGAGCAATAACATAATTTCTCGGATGGTTTTGGGACGAAGGTACTTGGACGAGAAGGCCGGGAACAAGATAAAGCCGGCGGAGTTTAGGGAGATGTGGGAGGAGCTGTTTGTGCTGAACGGGGTTTTAAATATTGGAGACTTTATACCGTGGCTTGCCTGGTTGGATCTCCAGGGTTACGTCAGGCGTATGAAGAAGCTGAGCAAGCGGTTGGATGTTTTCCTGGAGGAAGTGTTGGAAGAGCACGACAAGAGGAGGAAGAGCGTGAAGAATTATGTTACCAAAGACATGGTGGACGTTCTGCTGCAGCAGGCCGACAATCCACAGCTGAAGCTGAGTCGAGTCAGAGTCAAAGCATTCACTCAGGACATCATAGCGGGCGGCACCGAAAGCTCCGCGACGCTGGTGGAGTGGGGACTGTCGGAGCTCTTGAAAAAGCCGGAGACGTTGGAAAGAGCCGCGGAAGAGCTGGACAGAGTGGTGGGCAGAGAACGGTGGGTGGAAGAGAAGGACATTGGTGGGCTAGAGTATCTACAGTGGGTAGTGAAAGAGACGATGAGGCTTCATCCTGTGGCTCCCATGCTCGTCCCTCGTCTCTCCACTCAAGCCTGCAGAATCGCAGGGTACGACATTCCTGCGAACACGAGGTTGTTCGTCAACGTTTGGACTATCGGCCGGGACGGCAAGTTATGGGAGAACCCTGATGAGTTCATGCCAGAGAGATTCAAAGGGAGCACAGTGGACGTGAAGGGCAGAGATTACGAGCTCCTGCCATTTGGGTCGGGGAGGAGGATGTGCCCGGGATATAGTCTTGGAATCAAAGTAGTTCATTTGGGTTTGGCCAATCTCATCCATGGATTCCACTGGTGCCAGCCTGATGGACAGAACCCTGAGGACTTGGACATGGGCGAGACCTTTGGGTTGTCTACTCCTAAAACAATCCCTCTCGTTGCCATGGCCCGACCTCGCCTGCCTTCTCATCTCTATAACTTCAATTCTTCCCACACTTAAAGAGTGCTCTCTGTGTATCTTCAAATAAAATGGGCCTCTGTTTATGGAGAAGTAGATCTGCATATTGTATCAGTTGCTATAACAGTTAATCTACTATCAGTTCCCATTATAGCAGTGTACCATGGCCGAATGCACCCAATCCAATTTTATCCCAAGTTGGATAATGTACACAATCCAATCCGAACCTATCGAACTCTTCAGTTTACTTTTCCAGATTATTTTTCTGGGAGTGCCGCAAGTGTGTGGGGACGATGATGTAATGAGTGCCGTATAGTCGTGATGGTGGTAGAAAAGTAGAAAGATTCCAAATATCGTCATTTGATGTAATGAATGAATAGTTAAGGAGGTATCGTAATAACTGCTGTGGAAAAAGTTAAAGAAATTCAAAAGTATGATAATGTAATCCATGAATATGATGATATGATCAATATTGTTCGGGTGTTGATTGTAATGAGGAAGAAATAAAATTCATGAATTTACTTTATTTTGGGGGGAGGCGATGAGCAAATCTATATCCAGGCAAATCTCCTAACCCCCGAGGAATTCACCATCAGCTTGGATCTCATACAAAATTAAATTTGGGA

Ace file of the UniGene sp_v3.0_unigene9146

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flavonoid 3-hydroxylase, putative n=1 Tax=Ricinus communis RepID=B9S5P8_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3		IPR017973	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002303241.1	cytochrome P450 [Populus trichocarpa]	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV76

Fln msg:

Fln protein: MDLQLPFAIADLRMIGYLVVTIISAYLICRRLRPSVKLPPGPRAWPIIGNLNLMGKLPHRSLDLLSKTYGPLMYMRLGSMPCVVGSSAEMAREFLKTHDLTFSSRPRVAAGKYTVYNYSDITWSPYGEHWRLARKICLMELFSAKRLESFEYIRVEEVARMLSSVFETSRQGLPVEIREETTNVSNNIISRMVLGRRYLDEKAGNKIKPAEFREMWEELFVLNGVLNIGDFIPWLAWLDLQGYVRRMKKLSKRLDVFLEEVLEEHDKRRKSVKNYVTKDMVDVLLQQADNPQLKLSRVRVKAFTQDIIAGGTESSATLVEWGLSELLKKPETLERAAEELDRVVGRERWVEEKDIGGLEYLQWVVKETMRLHPVAPMLVPRLSTQACRIAGYDIPANTRLFVNVWTIGRDGKLWENPDEFMPERFKGSTVDVKGRDYELLPFGSGRRMCPGYSLGIKVVHLGLANLIHGFHWCQPDGQNPEDLDMGETFGLSTPKTIPLVAMARPRLPSHLYNFNSSHT*

Protein Length: 521

Fln nts: ATGGGGACCACAGCTCCTGCAATAGCCTTGAGAACTGAAAATTTTCTTTATCTCATTGGATTTACAAGTTGCAGATCTGCCGTTAATCTCA_-_ATGGATTTACAGCTGCCGTTTGCCATTGCAGATCTGCGAATGATCGGCTACCTTGTGGTGACCATCATATCGGCTTATCTGATCTGCAGGCGACTTCGTCCTTCTGTGAAATTGCCGCCCGGTCCCCGTGCTTGGCCCATAATCGGGAACCTGAATCTCATGGGGAAATTACCCCACAGGTCGCTGGATCTACTCTCCAAAACATATGGCCCCCTCATGTATATGAGACTCGGATCCATGCCATGCGTGGTCGGCTCATCCGCTGAGATGGCCCGAGAGTTTCTCAAGACCCACGATCTCACATTCTCGTCCCGACCCCGTGTGGCGGCCGGGAAATACACTGTTTACAACTACTCCGACATCACCTGGTCTCCCTACGGAGAGCACTGGCGCCTCGCCAGGAAAATCTGCCTCATGGAGCTCTTCAGTGCCAAACGCCTCGAATCTTTCGAGTACATCAGAGTAGAAGAGGTCGCCCGGATGCTAAGTTCCGTGTTCGAAACCAGCCGGCAGGGCCTCCCTGTAGAAATCAGGGAAGAGACGACTAATGTGAGCAATAACATAATTTCTCGGATGGTTTTGGGACGAAGGTACTTGGACGAGAAGGCCGGGAACAAGATAAAGCCGGCGGAGTTTAGGGAGATGTGGGAGGAGCTGTTTGTGCTGAACGGGGTTTTAAATATTGGAGACTTTATACCGTGGCTTGCCTGGTTGGATCTCCAGGGTTACGTCAGGCGTATGAAGAAGCTGAGCAAGCGGTTGGATGTTTTCCTGGAGGAAGTGTTGGAAGAGCACGACAAGAGGAGGAAGAGCGTGAAGAATTATGTTACCAAAGACATGGTGGACGTTCTGCTGCAGCAGGCCGACAATCCACAGCTGAAGCTGAGTCGAGTCAGAGTCAAAGCATTCACTCAGGACATCATAGCGGGCGGCACCGAAAGCTCCGCGACGCTGGTGGAGTGGGGACTGTCGGAGCTCTTGAAAAAGCCGGAGACGTTGGAAAGAGCCGCGGAAGAGCTGGACAGAGTGGTGGGCAGAGAACGGTGGGTGGAAGAGAAGGACATTGGTGGGCTAGAGTATCTACAGTGGGTAGTGAAAGAGACGATGAGGCTTCATCCTGTGGCTCCCATGCTCGTCCCTCGTCTCTCCACTCAAGCCTGCAGAATCGCAGGGTACGACATTCCTGCGAACACGAGGTTGTTCGTCAACGTTTGGACTATCGGCCGGGACGGCAAGTTATGGGAGAACCCTGATGAGTTCATGCCAGAGAGATTCAAAGGGAGCACAGTGGACGTGAAGGGCAGAGATTACGAGCTCCTGCCATTTGGGTCGGGGAGGAGGATGTGCCCGGGATATAGTCTTGGAATCAAAGTAGTTCATTTGGGTTTGGCCAATCTCATCCATGGATTCCACTGGTGCCAGCCTGATGGACAGAACCCTGAGGACTTGGACATGGGCGAGACCTTTGGGTTGTCTACTCCTAAAACAATCCCTCTCGTTGCCATGGCCCGACCTCGCCTGCCTTCTCATCTCTATAACTTCAATTCTTCCCACACTTAA___AGAGTGCTCTCTGTGTATCTTCAAATAAAATGGGCCTCTGTTTATGGAGAAGTAGATCTGCATATTGTATCAGTTGCTATAACAGTTAATCTACTATCAGTTCCCATTATAGCAGTGTACCATGGCCGAATGCACCCAATCCAATTTTATCCCAAGTTGGATAATGTACACAATCCAATCCGAACCTATCGAACTCTTCAGTTTACTTTTCCAGATTATTTTTCTGGGAGTGCCGCAAGTGTGTGGGGACGATGATGTAATGAGTGCCGTATAGTCGTGATGGTGGTAGAAAAGTAGAAAGATTCCAAATATCGTCATTTGATGTAATGAATGAATAGTTAAGGAGGTATCGTAATAACTGCTGTGGAAAAAGTTAAAGAAATTCAAAAGTATGATAATGTAATCCATGAATATGATGATATGATCAATATTGTTCGGGTGTTGATTGTAATGAGGAAGAAATAAAATTCATGAATTTACTTTATTTTGGGGGGAGGCGATGAGCAAATCTATATCCAGGCAAATCTCCTAACCCCCGAGGAATTCACCATCAGCTTGGATCTCATACAAAATTAAATTTGGGA

Fln Alignment:

Contig9146___MDLQLPFAIADLRMIGYLVVTIISAYLICRRLRPSVKLPPGPRAWPIIGNLNLMGKLPHRSLDLLSKTYGPLMYMRLGSMPCVVGSSAEMAREFLKTHDLTFSSRPRVAAGKYTVYNYSDITWSPYGEHWRLARKICLMELFSAKRLESFEYIRVEEVARMLSSVFETSRQGLPVEIREETTNVSNNIISRMVLGRRYLDEKAGNKIKPAEFREMWEELFVLNGVLNIGDFIPWLAWLDLQGYVRRMKKLSKRLDVFLEEVLEEHDKRRKSVKNYVTKDMVDVLLQQADNPQLKLSRVRVKAFTQDIIAGGTESSATLVEWGLSELLKKPETLERAAEELDRVVGRERWVEEKDIGGLEYLQWVVKETMRLHPVAPMLVPRLSTQACRIAGYDIPANTRLFVNVWTIGRDGKLWENPDEFMPERFKGSTVDVKGRDYELLPFGSGRRMCPGYSLGIKVVHLGLANLIHGFHWCQPDGQNPEDLDMGETFGLSTPKTIPLVAMARPRLPSHLYNFNSSH
A9NV76______________MDLLSIFALPYLP-----VLAIVSVYLIYMRLRPSVKLPPGPRAWPIIGNLNLMGKLPHRSLDRLSKTYGPLMYIRLGSIPCVVASSAEMAREFLQTHDLTFSSRPQVASGKYTTYNYSDITWSPYGDYFRLARKVCLMELFSAKRLESFEYIRVEEVARMLGSVFETCQRGLPVEIRKETYGVSNNIISRMALGRRYFDKEAGNMMRLEELKEMLEEFFLLNGVFNIVDFIPWLGWLDLQGYVGRMKKLSERLDVFLEEVVEEHDRRRKGVENYVAKDMMDVLLKQADDPQLNLSRIKVKAFTLDIIAGGTETSATLVEWGLSELLKKPEMLERATKELDRVVGRERWVEEKDMGGLEYVQWIVKETMRLHPVAPLLVPHLSTQRCRIAGYDIPANTRVFVNVWSIGRDDQSWENPNEFRPERFKGSTVDVMGRDYELLPFGSGRRMCPGNSLGLKVVQIALANLIHGFQWKLPDGQSPKDLDMGEIFGLSTSKTCPLVAMARPRLPSHLYNFNSSH

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
85	83			16	0.994512
88		83	16		0.994512
172		16	83		0.994512
196		20		80	0.995493
208	20		80		0.995493
289		75	25		0.996473
603	85		14		0.999981
691		87		12	0.999964
827		87		12	0.992554
846	87			12	0.992554
847			87	12	0.992554
959	87		12		0.992554
1298	85		14		1.0
1444	85		14		0.993533
1693		16		83	0.994512
1695	83		16		0.994512
1697		16	83		0.994512
1698	16		83		0.994512
1699	83	16			0.994512
1700			83	16	0.994512
1701	83	16			0.994512
1764	25		75		0.996473
1767			75	25	0.996473
1971			20	80	0.995493
1972			20	80	0.995493
1985		20	80		0.995493
1987	80			20	0.995493
1998			75	25	0.996473
2001	75	25			0.996473
2094	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain