SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9123

Length: 1442 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9123

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gb\|AAD03425.1\| contains similarity to Iron/Ascorbate family of oxidoreductases (Pfam: PF00671, Score=297.8, E=1.3e-85, N=1) [Arabidopsis thaliana] emb\|CAB40043.1\| putative Fe(II)/a	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	1-aminocyclopropane-1-carboxylate oxidase, putative	-	-	3.938e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Flavanone 3-dioxygenase.	EC:1.14.11.9	-	6.867e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	6.867e-09	%
Sma3	Biosynthesis of phenylpropanoids	01061	6.867e-09	%
Sma3	Metabolic pathways	01100	6.867e-09	%
Sma3	Biosynthesis of secondary metabolites	01110	6.867e-09	%

Source	Gene names
Sma3	AT4g10490; AT4g10500; At4g10490; At4g10500; At5g24530; F3H; F3H-A1; F3H-D1; F3H7.16; F3H7.17; F7L13.70; F7L13.80; GSVIVT00000476001; GSVIVT00000477001; GSVIVT00000578001; GSVIVT00007513001; GSVIVT00014215001; GSVIVT00026183001; GSVIVT00033948001; GSVIVT00

Source	GOs	Term	Type	e value	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	0.0	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein chr4:6491089-6492342 FORWARD LENGTH=349	49%
RefSeq	Arabidopsis thaliana	NP_192788.1	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002300519.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE21

Fln msg:

Fln protein: MASSTPCDDQTNLDGIEKLISNGMNSFQVHDKYILPPHERPRISEVSYPQHIPVVDLGDLIDGRDRTKVIQEIRRACEEDGFFQITNHGVQETVMRNMMRIAREFFEMPVENRASLYSEDPNQPVRVSTSFNIRKEKVRHWRDYLRHPCYPLEEVIGSWPEKPAGYREIAAKYSAELRTLILRLLSAISEALGLDSDYLNRVFGRHNQAMVINYYPLCPNPDLTFGLPGHSDPDAITVLMQDEVSGLQVLKNGKWVAVQPLANAFVVNLGDQVQVVSNGRFRSVEHRAVTNASSARISIPMFCTPAEDAFIAPAESMVDEQHPPVYRGYKFDEFWEAFWSNVLERKSVLDTFKIEYTE*

Protein Length: 360

Fln nts: ACATGGGGAGGCCGACCACTTCATACTGTGTTTGGAAACATTTGCACAGTCCGGTGGTGCCCTACCCATCTTTAAATCTGTGAACTCAGGCCGACCACTTCATACTGTGTTGGAAACATTTGCACAGTCCGGTGGTGCCCTACCCATCTCAATTCTACTGTCAAGAAAG_-_ATGGCATCTTCTACTCCGTGTGATGACCAAACCAATCTCGATGGCATCGAAAAGTTAATTTCCAATGGAATGAACAGTTTTCAAGTGCACGATAAGTATATTTTACCTCCCCACGAACGCCCTCGGATTTCTGAGGTCTCCTATCCTCAACACATTCCGGTGGTGGATCTCGGAGACCTGATCGATGGCCGGGACAGAACAAAGGTAATCCAAGAAATCAGACGTGCATGCGAGGAGGACGGCTTTTTCCAGATAACAAACCATGGTGTGCAAGAGACAGTCATGAGAAACATGATGAGAATTGCCAGAGAATTCTTCGAAATGCCCGTGGAAAACCGCGCAAGCCTCTATTCAGAGGACCCAAATCAGCCGGTTAGGGTTTCTACAAGCTTCAATATCCGCAAAGAAAAAGTCCGACACTGGAGGGACTATCTAAGGCACCCGTGTTATCCCCTGGAGGAAGTCATAGGGTCTTGGCCTGAAAAACCTGCAGGCTACAGAGAAATTGCAGCTAAATACTCGGCTGAGCTCAGAACACTGATCTTAAGGCTTCTATCCGCCATTTCAGAGGCTCTAGGTTTGGACTCTGATTACTTGAACAGAGTTTTTGGAAGACACAACCAGGCGATGGTTATAAATTACTATCCTTTATGCCCAAACCCCGATCTTACATTTGGTTTACCAGGCCATTCAGATCCAGATGCCATCACTGTTCTGATGCAAGACGAAGTCAGTGGCTTGCAAGTATTAAAAAATGGAAAGTGGGTTGCCGTACAACCCTTAGCTAATGCCTTTGTGGTCAACTTGGGAGATCAAGTTCAGGTCGTGAGCAATGGGAGATTCAGGAGTGTTGAGCATCGAGCAGTAACAAACGCATCCAGTGCACGTATATCAATTCCTATGTTCTGTACTCCTGCAGAGGATGCCTTCATTGCTCCTGCAGAGTCCATGGTTGATGAACAACATCCACCTGTTTACAGAGGATATAAGTTTGACGAGTTCTGGGAAGCCTTTTGGAGCAACGTATTAGAGAGGAAGAGTGTGCTCGATACTTTCAAAATCGAATATACAGAGTGA___ATGAATTTGGTTGCGCACTGGTGCACTTCACTTCACTCTCAGATGCGAGGAGAGTACGTCTTTCCATAAACTCTGATCTCCATTAGTGACCCTTCCTTGTAGAAAACGTCTTGGATAATATTAACTCAATAATTTGGGTGAGCCAAATTTTAAATATTGTTTACTCCATTTACTAGTTTGATAGTTTACCACGTGC

Fln Alignment:

Contig9123___SSTPCDDQTNLDGIEKLISNGMNSFQVHDKYILPPHERPRISEVSYPQHIPVVDLGDLIDGRDRTKVIQEIRRACEEDGFFQITNHGVQETVMRNMMRIAREFFEMPVENRASLYSEDPNQPVRVSTSFNIRKEKVRHWRDYLRHPCYPLEEVIGSWPEKPAGYREIAAKYSAELRTLILRLLSAISEALGLDSDYLNRVFGRHNQAMVINYYPLCPNPDLTFGLPGHSDPDAITVLMQDEVSGLQVLKNGKWVAVQPLANAFVVNLGDQVQVVSNGRFRSVEHRAVTNASSARISIPMFCTPAEDAFIAPAESMVDEQHPPVYRGYKFDEFWEAFWSNVLERKSVLDTFKIEYTE
D5AE21______________ASTLCDDQTHLDAIEKLISSGINSSEVQDRYILPPHERPRMSEVCYSECIPVVDLGDLIDGPNRTRVIQEIRRACEENGFFQIINHGVKETIMKSMMGIAKEFFEMPVENRACFYSEDPMQPVRVSTSFNICKEKVQHWRDYLRHPCYPLEEVMGSWPEKPAGYREIAGKYSAEVRALILRLLSSISEALGLDSDYLNRIFGTHNQAMVINYYPSCPNPDLTFGLPGHSDPDGITVLMQDEVSGLQVFKNGKWIAVQPLANAFVVNLGDQIQVVSNGRFRSVEHRAVTNASSARISIPMFCTPAEDAFIAPAASLVDEQHPPVYRGYKFEEFWKAFWSQVLGRKTVLDTFKIEYPE

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
100		40	20	20	0.994159
101			40	60	1.0
102			40	60	1.0
103		40	60		1.0
164		83		16	0.994512
198		83		16	0.994512
270		16		83	0.994512
318		12		87	0.992554
332		14		85	0.993533
719	15		84		0.999986
773		15	84		0.999986
897		83		16	0.994512
899	83		16		0.994512
900	83		16		0.994512
1240	12	87			0.999964
1352	83	16			0.994512
1353	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain