SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9092

Length: 2050 nt

UniGene Fasta

>sp_v3.0_unigene9092
CGTCGTGACCTTGTCCGTCATGGGGAGAGCTCATCAATAGCTGGCCAGGGAAACTGGGAATTTAGAAATTTTTTGAATGTCCAATTCAGTCGCCGAGGATCTCAAGAGTCAGGACAGAAGATCGGATAGATTGCTAAACTGCAAGTTCGGAGTTCTGAAAATTTGAACTACCCAGTTGATTATCTGAGGTTCTGAATACACCCAACTGAATTCGAGGCAAATAAACTATAGCTCACAAGTGCTTCCGAGAGTAGAAGAGAAATGGCTTCGTCAGGTTTGTCCAGAATAGGGTTGGCTGGCCTGGCTGTGATGGGCCAGAATCTTGCTCTCAATATTGCAGAGAAAGGCTTCCCCATCTCGGTCTACAACAGGAGCAGTGAAAAAGTGGATGAGACTGTTGAGAGAGCCAAGGTTGAAGGTAATCTGCCCGTGAAGGGCTTCCATGACCCAAAGGATTTTGTGAATTCAATCCAAAAGCCCAGAGTTATAATCCTGCTCGTCAAAGCAGGACTCCCAGTGGACAAAACAATAGAAACCCTATCCGCCCACATGGAGGAAGGGGACTGCATTGTGGATGGTGGGAATGAATGGTATGAAAACACAGAGAGGAGACAGGAGGCTGCCAAGCAGAAAGGGCTGCTGTATTTGGGGATGGGAGTCTCTGGCGGTGAGGAAGGAGCCAGGCATGGCCCCTCTCTGATGCCCGGAGGGTCATTTGAAGCCTACAAGTACATCGAGGACATATTGCTAAAGGTGGCTGCACAGGTTGACAGTGGACCATGTGTGACTTACATTGGTAAAGGCGGAGCAGGCAATTTTGTCAAGATGGTGCATAATGGCATTGAGTATGGAGACATGCAGCTCATTGCAGAGGCTTATGATGTTCTAAAGTCTGTCGGTAAGCTCACTAACGAAGAACTGCACCAGGCTTTTGATACTTGGAATAAGGGGGAATTGTGTAGTTTTTTGATAGAAATCACTGCGGATATCTTTGGGATCAAGGATGATAAGGGGGATGGGTATCTTGTGGATAAAGTTCTCGATAAAACTGGCATGAAGGGCACTGGTAAGTGGACTGTGCAACAAGCTGCAGATCTGTCTGTTGCAGCCCCTACCATTGCTTCTTCTTTGGATTCTAGGTTTCTTAGTGGATTGAAGGAGGAGAGGGTGGAGGCCTCCAAGGTGTTCAAGAATGTAGATGTGGGTACTGTGCCAGATTTGGATAAGACCAAGCTTATTGATGATGTGAGGCGGGCTCTGTATGCATCTAAGATATGTAGTTATGCCCAAGGAATGAATCTGATCCGTGCGAAGAGCATAGAGAAGGGATGGGATTTGAAACTGGGAGAGCTCGCCCGGATCTGGAAGGGTGGTTGCATCATTCGTGCGATTTTCCTCGATCGGATCAAGAAGGCCTATGACAGGAATCCAGATCTGTTTAGTCTGTTGGTTGATCCTGAATTTGCAAAGGAAATGATTGAGAGACAGTCAGCGTGGCGGCGAGTTGTGACTCTTGCGATCAACGCTGGTGTCAGCGTTCCAGGTATGTCTGCAAGTTTGGCGTACTTTGATTCCTATAGAAGGGAGAGTTTGCCTGCAAACCTGGTTCAGGCACAGCGAGATTATTTCGGTGCTCACACCTATGAGAGGATTGATATGCCTGGTTTCTTCCACACTGAGTGGTTCAAGATTGCAAAACAATCAAAGATTTGAAATTTTTTAGATTGTCGAACCCCAGAGAGAATAAGCCCATCCATGCTTTAGGTTTAAGTGTTAAATTGCATAGTGAATTCTGTTGGCAATTCGTAGTTTCTTAAGAAAGTTTTCCCTATCAATTGCTTATGTGTTTTCTGTACTTTTTCAAATTCAAAGAAACAAAGAACGTATCGAGGTTTTTGAATAAATCCTTGCTTGAATTTCAGAGCAGAAAGCTACTAATCTGGTGTGTTTTACTGGATTAAGAGATCAAATTTTAGCTATCTTATTTTAAAAATGAATACAGAGGCAGGCTGCTTATGTTCAAATTCGCTATTTTGCTGACCAGAATATA

Ace file of the UniGene sp_v3.0_unigene9092

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	6-phosphogluconate dehydrogenase, decarboxylating n=8 Tax=Pinus RepID=E3V1H6_PINSY	-	-	0.0	96%
FL-Next	sp=6-phosphogluconate dehydrogenase, decarboxylating; Pinus pinaster (Maritime pine).	-	-	0.0	99%

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphogluconate dehydrogenase (decarboxylating).	EC:1.1.1.44	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pentose phosphate pathway	00030	%
Sma3	Glutathione metabolism	00480	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	GOs	Term	Type	Identity
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	phosphogluconate dehydrogenase (decarboxylating) activity	GO:0004616	Molecular Function	-
Sma3	pentose-phosphate shunt	GO:0006098	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR006183	-	-
Sma3	6-phosphogluconate dehydrogenase, C-terminal	IPR006114	-	-
Sma3	6-phosphogluconate dehydrogenase, decarboxylating	IPR006113	-	-
Sma3	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension	IPR012284	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02360.2	6-phosphogluconate dehydrogenase family protein chr3:482498-483958 FORWARD LENGTH=486	83%
RefSeq	Arabidopsis thaliana	NP_850502.1	6-phosphogluconate dehydrogenase [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002311423.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: E3V289

Fln msg:

Fln protein: MASSGLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRSSEKVDETVERAKVEGNLPVKGFHDPKDFVNSIQKPRVIILLVKAGLPVDKTIETLSAHMEEGDCIVDGGNEWYENTERRQEAAKQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVDSGPCVTYIGKGGAGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLTNEELHQAFDTWNKGELCSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDSRFLSGLKEERVEASKVFKNVDVGTVPDLDKTKLIDDVRRALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPDLFSLLVDPEFAKEMIERQSAWRRVVTLAINAGVSVPGMSASLAYFDSYRRESLPANLVQAQRDYFGAHTYERIDMPGFFHTEWFKIAKQSKI*

Protein Length: 485

Fln nts: CGTCGTGACCTTGTCCGTCATGGGGAGAGCTCATCAATAGCTGGCCAGGGAAACTGGGAATTTAGAAATTTTTTGAATGTCCAATTCAGTCGCCGAGGATCTCAAGAGTCAGGACAGAAGATCGGATAGATTGCTAAACTGCAAGTTCGGAGTTCTGAAAATTTGAACTACCCAGTTGATTATCTGAGGTTCTGAATACACCCAACTGAATTCGAGGCAAATAAACTATAGCTCACAAGTGCTTCCGAGAGTAGAAGAGAA_-_ATGGCTTCGTCAGGTTTGTCCAGAATAGGGTTGGCTGGCCTGGCTGTGATGGGCCAGAATCTTGCTCTCAATATTGCAGAGAAAGGCTTCCCCATCTCGGTCTACAACAGGAGCAGTGAAAAAGTGGATGAGACTGTTGAGAGAGCCAAGGTTGAAGGTAATCTGCCCGTGAAGGGCTTCCATGACCCAAAGGATTTTGTGAATTCAATCCAAAAGCCCAGAGTTATAATCCTGCTCGTCAAAGCAGGACTCCCAGTGGACAAAACAATAGAAACCCTATCCGCCCACATGGAGGAAGGGGACTGCATTGTGGATGGTGGGAATGAATGGTATGAAAACACAGAGAGGAGACAGGAGGCTGCCAAGCAGAAAGGGCTGCTGTATTTGGGGATGGGAGTCTCTGGCGGTGAGGAAGGAGCCAGGCATGGCCCCTCTCTGATGCCCGGAGGGTCATTTGAAGCCTACAAGTACATCGAGGACATATTGCTAAAGGTGGCTGCACAGGTTGACAGTGGACCATGTGTGACTTACATTGGTAAAGGCGGAGCAGGCAATTTTGTCAAGATGGTGCATAATGGCATTGAGTATGGAGACATGCAGCTCATTGCAGAGGCTTATGATGTTCTAAAGTCTGTCGGTAAGCTCACTAACGAAGAACTGCACCAGGCTTTTGATACTTGGAATAAGGGGGAATTGTGTAGTTTTTTGATAGAAATCACTGCGGATATCTTTGGGATCAAGGATGATAAGGGGGATGGGTATCTTGTGGATAAAGTTCTCGATAAAACTGGCATGAAGGGCACTGGTAAGTGGACTGTGCAACAAGCTGCAGATCTGTCTGTTGCAGCCCCTACCATTGCTTCTTCTTTGGATTCTAGGTTTCTTAGTGGATTGAAGGAGGAGAGGGTGGAGGCCTCCAAGGTGTTCAAGAATGTAGATGTGGGTACTGTGCCAGATTTGGATAAGACCAAGCTTATTGATGATGTGAGGCGGGCTCTGTATGCATCTAAGATATGTAGTTATGCCCAAGGAATGAATCTGATCCGTGCGAAGAGCATAGAGAAGGGATGGGATTTGAAACTGGGAGAGCTCGCCCGGATCTGGAAGGGTGGTTGCATCATTCGTGCGATTTTCCTCGATCGGATCAAGAAGGCCTATGACAGGAATCCAGATCTGTTTAGTCTGTTGGTTGATCCTGAATTTGCAAAGGAAATGATTGAGAGACAGTCAGCGTGGCGGCGAGTTGTGACTCTTGCGATCAACGCTGGTGTCAGCGTTCCAGGTATGTCTGCAAGTTTGGCGTACTTTGATTCCTATAGAAGGGAGAGTTTGCCTGCAAACCTGGTTCAGGCACAGCGAGATTATTTCGGTGCTCACACCTATGAGAGGATTGATATGCCTGGTTTCTTCCACACTGAGTGGTTCAAGATTGCAAAACAATCAAAGATTTGA___AATTTTTTAGATTGTCGAACCCCAGAGAGAATAAGCCCATCCATGCTTTAGGTTTAAGTGTTAAATTGCATAGTGAATTCTGTTGGCAATTCGTAGTTTCTTAAGAAAGTTTTCCCTATCAATTGCTTATGTGTTTTCTGTACTTTTTCAAATTCAAAGAAACAAAGAACGTATCGAGGTTTTTGAATAAATCCTTGCTTGAATTTCAGAGCAGAAAGCTACTAATCTGGTGTGTTTTACTGGATTAAGAGATCAAATTTTAGCTATCTTATTTTAAAAATGAATACAGAGGCAGGCTGCTTATGTTCAAATTCGCTATTTTGCTGACCAGAATATA

Fln Alignment:

Contig9092___GLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRSSEKVDETVERAKVEGNLPVKGFHDPKDFVNSIQKPRVIILLVKAGLPVDKTIETLSAHMEEGDCIVDGGNEWYENTERRQEAAKQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVDSGPCVTYIGKGGAGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLTNEELHQAFDTWNKGELCSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDSRFLSGLKEERVEASKVFKNVDVGTVPDLDKTKLIDDVRRALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPDLFSLLVDPEFAKEMIERQSAWRRVVTLAINAGVSVPGMSASLAYFDSYRRESLPANLVQAQRDYFGAHTYERIDMPGFFHTEWFKIAKQSKI
E3V289______________GLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRSSEKVDETVERAKVEGNLPVKGFHDPKDFVNSIQKPRVIILLVKAGLPVDKTIETLSAHMEEGDCIVDGGNEWYENTERRQEAAKQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVDSGPCVTYIGKGGAGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLTNEELHQAFDTWNKGKLCSFLIEITADIFGIKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDSRFLSGLKEERVEASKVFKNVDVGTVPDLDKTKLIDDVRRALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPDLFSLLVDPEFAKEMIERQSAWRRVVTLAINAGVSVPGMSASLAYFDSYRRESLPANLVQAQRDYFGAHTYERIDMPGFFHTEWFKIAKQSKI

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
76	83			16	0.994512
77	83	16			0.994512
78	10			90	0.90298
79		10	90		0.90298
82	10	90			0.90298
186		16	83		0.999991
929		83		16	0.994512
930		16		83	0.994512
1021		83		16	0.994512
1031	88		11		0.923564
1485	97		2		0.971188
1924	6	3	89		0.998304
2020		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain