SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9082

Length: 2402 nt

UniGene Fasta

>sp_v3.0_unigene9082
ATGGGGGATGAATGTTCAAACACCGCCCTCAATAAGCTAAGATTTCTTAGAAGTAACGGGGTTCAGTAAATGTATTTAAACAAAACGCTAATTATATATGCATCACGAGCTGAAAAGTCCTGGGTGTAACGAGCTTTAAGAGCAAGTCATGCTTTTATCGAGGATAGGCATGTGATAGAGCCTCATGGCCTCCCATGCAATTTGGCCTCTGTACAGTTATAGGGAGTGAAAGGGCGCACGATCCAAATTGTGATGCTCATCAGAGTGGACTTTCCTAGTTTCCCCAACTGTTACGGCACGGCACGGCACGTCTCTCATTCTGGTTAAATACCCATAAGTTAGTGGTTGGGATTCGATCCTTCATCACTCTTTCATTTGTATTTTCCATCCTTAACGAGTTCGCCCACGCCCTTAATCTCCCATCTGATATCATTATATCACCTGTATTAGTCACTAGAGATCCAGAGTTTTACATTCCCTTGCGGGGAACTCGCTCTTGTGATGTCAGTCAGATTTCCAATTTAAGATATCTGTGGCCGAATGGCAAAGAAATTTTGATTTTTGATTTCTTCTTTCTTTGAAGTTCTTAGTTAGTTCATCTTATCACAACTAAAGCAGCAGCTGCTGCTTTAGTTCTGACACCAAAGCATCTTACCTAGACTTGTTTGATTTTTACCAGTTGTAAAGCGGGTCAGAACTAAAAAAACAATAATTAGCTTAAGCGGACTCGAAACCGTGACCATTCGTGTACTTTTCTGTCTGAGAATTCATGCTAATGGATTCGTTGCAGTAATACATTCAGATTTATGTACTATTTGTTGCCCCTTCCTATGTAATGTTTAAATATCGGACACATTTAGCAGGGTAAGGGGTGTTCTCTACACAGATTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTGCCTCGGGCAATAATGTTCCTAACAGCTGCCATCAAGCGCAGCGGAGGCTTGAGAACGAATGAAACAATGAGGGTAATTATGACAGCGGTGTTTGGAATTGTCATCGGCTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGTTCACTTTTCCAACCATGGCAAACTTCTCTAATCTTCGATTTTCCGAGAACAATAATACAGGCTTAGCTGATCAAGGTGTGATGAACTCTGGTCACGCATCCGAGAAAAAGCTAAAATCCGGTGTTTCTCCAACTGCTTCTGCGGCTGGAAATAACTCTCAGATATATGTACCGACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGAATTGTTGTGGCCGAAACTGATTTGTACCTCCGCAGATTGTGGGGTAACCCCAGTGAGGACTTACCATTCAAGCAAAAGTACCTAGTGGTTTTCACTGTTGGGTTTTCACAGAAAGATATTGTCAATACTGCTGTTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGGCAAGTGAATGGGATCAATTTGAGTGGTCTAAAAAAGCAATTCATATCAGCGCAATGAGACAAACTAAATGGTGGTATGCGAAGCGATTTCTTCATCCAGATGTCGTAGCACCTTTTGAATACATATTTATTTGGGATGAAGATCTAGGAGTTGAGCACTTTAATGCAGAAAAATACATAGAACTTGTAAGAAAGCATGGTTTGGAGATATCACAACCTGCTTTGGAGCCACGTTCTGGTCTAACATGGCAAATGACAAGAAAGAGGGATAATGTGGAAGTGCACAAGGAAACGACAGAGCAACCTGGGTGGTGCACTGATCCACATCTACCGCCATGTGCAGGGTTTGTAGAGATAATGGCTCCTGTATTTTCCCGGAAGGCATGGCGCTGTGTTTGGTATATGATTCAGAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACCGCCTGCAAACGAGAAAGTTGGAGTTGTTGATGCACAGTGGATTGTTCACAACAGTGTCCCTTCATTGGGAAACCAGGGTGAATCTCAACAGGGCAGGCCAGGTTGGGAAGGGGTCCGAAACAGATGTAGAGATGAGTGGATGGAATTCCGAAAGCGGATGGAGAAAGCTGAAAATGAATACCTGCAAGAAAATTCTCATAGTTAGTGCAGTATTTGGTGAGACACGTGCACATTCCGCATTGCTCAAGTTCCATTGTTTATATTTATGGCTACCATGAGCCAATTCTTTTAAAGCCTCGAGCTTGTATTTTTTTACAATCAAGTTTGATGGCCTTGTATTAAATTCCTAGGCACTCCAGAAAATTTTCGGTGCAAACATGTCTGATGTTAACATTTATTCTAAACCTTTTGGTATGGCAATTTTGGAGGTTTTCTTCCTATTCTTTAAAAACCACCTGTTCTTGTTATATAT

Ace file of the UniGene sp_v3.0_unigene9082

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF707 domain containing protein	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Lysine ketoglutarate reductase trans-splicing related 1	-	-	7.493e-19	-

Source	Gene names
Sma3	AT1G67850; AT3G26440; AT4g18530; At1g08040; At1g11170; At1g13000; At1g61240; At1g61240/F11P17_22; At1g67850; At2g28310; At3g26440; At3g27470; At3g27473; At4g18530; B1206D04.27-1; B1206D04.27-2; F28J12.190; F3F19.3; GSVIVT00001625001; GSVIVT00004646001; GS

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	hydroxymethylglutaryl-CoA synthase activity	GO:0004421	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	isoprenoid biosynthetic process	GO:0008299	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S17	IPR000266	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Protein of unknown function DUF707	IPR007877	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	IPR013528	-	-
Sma3	Hydroxymethylglutaryl-coenzyme A synthase C-terminal	IPR013746	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08040.1	Protein of unknown function (DUF707) chr1:2495507-2497973 REVERSE LENGTH=382	61%
RefSeq	Arabidopsis thaliana	NP_001030994.1	uncharacterized protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002323994.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLC3

Fln msg:

Fln protein: MFLTAAIKRSGGLRTNETMRVIMTAVFGIVIGFFVGASFPRDSLPKFTFPTMANFSNLRFSENNNTGLADQGVMNSGHASEKKLKSGVSPTASAAGNNSQIYVPTNPRGAETLAPGIVVAETDLYLRRLWGNPSEDLPFKQKYLVVFTVGFSQKDIVNTAVSKFSGNFTILLFHYDGRASEWDQFEWSKKAIHISAMRQTKWWYAKRFLHPDVVAPFEYIFIWDEDLGVEHFNAEKYIELVRKHGLEISQPALEPRSGLTWQMTRKRDNVEVHKETTEQPGWCTDPHLPPCAGFVEIMAPVFSRKAWRCVWYMIQNDLVHGWGLDLAIGRCAPPANEKVGVVDAQWIVHNSVPSLGNQGESQQGRPGWEGVRNRCRDEWMEFRKRMEKAENEYLQENSHS*

Protein Length: 402

Fln nts: ATGGGGGATGAATGTTCAAACACCGCCCTCAATAAGCTAAGATTTCTTAGAAGTAACGGGGTTCAGTAAATGTATTTAAACAAAACGCTAATTATATATGCATCACGAGCTGAAAAGTCCTGGGTGTAACGAGCTTTAAGAGCAAGTCATGCTTTTATCGAGGATAGGCATGTGATAGAGCCTCATGGCCTCCCATGCAATTTGGCCTCTGTACAGTTATAGGGAGTGAAAGGGCGCACGATCCAAATTGTGATGCTCATCAGAGTGGACTTTCCTAGTTTCCCCAACTGTTACGGCACGGCACGGCACGTCTCTCATTCTGGTTAAATACCCATAAGTTAGTGGTTGGGATTCGATCCTTCATCACTCTTTCATTTGTATTTTCCATCCTTAACGAGTTCGCCCACGCCCTTAATCTCCCATCTGATATCATTATATCACCTGTATTAGTCACTAGAGATCCAGAGTTTTACATTCCCTTGCGGGGAACTCGCTCTTGTGATGTCAGTCAGATTTCCAATTTAAGATATCTGTGGCCGAATGGCAAAGAAATTTTGATTTTTGATTTCTTCTTTCTTTGAAGTTCTTAGTTAGTTCATCTTATCACAACTAAAGCAGCAGCTGCTGCTTTAGTTCTGACACCAAAGCATCTTACCTAGACTTGTTTGATTTTTACCAGTTGTAAAGCGGGTCAGAACTAAAAAAACAATAATTAGCTTAAGCGGACTCGAAACCGTGACCATTCGTGTACTTTTCTGTCTGAGAATTCATGCTAATGGATTCGTTGCAGTAATACATTCAGATTTATGTACTATTTGTTGCCCCTTCCTATGTAATGTTTAAATATCGGACACATTTAGCAGGGTAAGGGGTGTTCTCTACACAGATTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTGCCTCGGGCAATA_-_ATGTTCCTAACAGCTGCCATCAAGCGCAGCGGAGGCTTGAGAACGAATGAAACAATGAGGGTAATTATGACAGCGGTGTTTGGAATTGTCATCGGCTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGTTCACTTTTCCAACCATGGCAAACTTCTCTAATCTTCGATTTTCCGAGAACAATAATACAGGCTTAGCTGATCAAGGTGTGATGAACTCTGGTCACGCATCCGAGAAAAAGCTAAAATCCGGTGTTTCTCCAACTGCTTCTGCGGCTGGAAATAACTCTCAGATATATGTACCGACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGAATTGTTGTGGCCGAAACTGATTTGTACCTCCGCAGATTGTGGGGTAACCCCAGTGAGGACTTACCATTCAAGCAAAAGTACCTAGTGGTTTTCACTGTTGGGTTTTCACAGAAAGATATTGTCAATACTGCTGTTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGGCAAGTGAATGGGATCAATTTGAGTGGTCTAAAAAAGCAATTCATATCAGCGCAATGAGACAAACTAAATGGTGGTATGCGAAGCGATTTCTTCATCCAGATGTCGTAGCACCTTTTGAATACATATTTATTTGGGATGAAGATCTAGGAGTTGAGCACTTTAATGCAGAAAAATACATAGAACTTGTAAGAAAGCATGGTTTGGAGATATCACAACCTGCTTTGGAGCCACGTTCTGGTCTAACATGGCAAATGACAAGAAAGAGGGATAATGTGGAAGTGCACAAGGAAACGACAGAGCAACCTGGGTGGTGCACTGATCCACATCTACCGCCATGTGCAGGGTTTGTAGAGATAATGGCTCCTGTATTTTCCCGGAAGGCATGGCGCTGTGTTTGGTATATGATTCAGAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACCGCCTGCAAACGAGAAAGTTGGAGTTGTTGATGCACAGTGGATTGTTCACAACAGTGTCCCTTCATTGGGAAACCAGGGTGAATCTCAACAGGGCAGGCCAGGTTGGGAAGGGGTCCGAAACAGATGTAGAGATGAGTGGATGGAATTCCGAAAGCGGATGGAGAAAGCTGAAAATGAATACCTGCAAGAAAATTCTCATAGTTAG___TGCAGTATTTGGTGAGACACGTGCACATTCCGCATTGCTCAAGTTCCATTGTTTATATTTATGGCTACCATGAGCCAATTCTTTTAAAGCCTCGAGCTTGTATTTTTTTACAATCAAGTTTGATGGCCTTGTATTAAATTCCTAGGCACTCCAGAAAATTTTCGGTGCAAACATGTCTGATGTTAACATTTATTCTAAACCTTTTGGTATGGCAATTTTGGAGGTTTTCTTCCTATTCTTTAAAAACCACCTGTTCTTGTTATATAT

Fln Alignment:

Contig9082___AAIKRSGG-LRTNETMRVIMTAVFGIVIGFFVGASFPRDSLPKFTFPTMANFSNLRFSENNNTGLADQGVMNSGHASEKKLKSGVSPTASAAGNNSQIYVPTNPRGAETLAPGIVVAETDLYLRRLWGNPSEDLPFKQKYLVVFTVGFSQKDIVNTAVSKFSGNFTILLFHYDGRASEWDQFEWSKKAIHISAMRQTKWWYAKRFLHPDVVAPFEYIFIWDEDLGVEHFNAEKYIELVRKHGLEISQPALEPRSGLTWQMTRKRDNVEVHKETTEQPGWCTDPHLPPCAGFVEIMAPVFSRKAWRCVWYMIQNDLVHGWGLDLAIGRCAPPANEKVGVVDAQWIVHNSVPSLGNQGESQQGRPGWEGVRNRCRDEWMEFRKRMEKAENEYLQENS
B8LLC3______________ATTNRSGAVMKPNETLRLILTAVFGIVFGFFIGASLPSIGLSKINFPSLLSTIELPFHEDRNSGLATQVMLNYAWASKSGTKFNSSTSDSRAKNSSKIYVPTNPRGAETLPPGIVVSETDLYLRRLWGKPSEDIVFKQKYLVTFTVGFQQREMVNSAVSKFSKNFTILLFHYDGRTSEWDQFEWSKRAIHISAKKQTKWWFAKRFLHPDVVAPFDYIFIWDEDLGVEHFDAEKYLGLVRKHGLEISQPGLEPNRGLTWQMTKRRGDSEVHKETQERPGWCSDPHLPPCAAFVEIMAPVFSRKAWQCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHNVVPSLGNQGESNNGKAPWEGVRERCRYEWGLFQGRLNKAEKEYLAKKA

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
362		75	25		0.996473
363			25	75	0.996473
364			25	75	0.996473
365		75	25		0.996473
668	20			80	0.995493
673	25			75	0.996473
674	25			75	0.996473
676			25	75	0.996473
837			25	75	1.0
954	77		22		0.999999
1202			10	90	0.90298
1359	80	20			0.995493
1361			80	20	0.995493
1481	10		90		0.90298
1482		10	90		0.90298
1485		90		10	0.90298
1537	88	11			0.923564
1540			88	11	0.923564
1561		12		87	0.992554
1935		75		25	0.996473
1936		75	25		0.996473
2012			16	83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
293	310	ACGGC ACGGC ACGGC ACG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain