SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9046

Length: 2799 nt

UniGene Fasta

>sp_v3.0_unigene9046
ATGGGGCTCTGTAACTCCTCCTTTCCCCTCCTCTCCTTTTATCAGATGTTTCCATAATTATGGGGACTGCAAGTCTTTTAGACTCACACTCACGCCCGGGCTTGTAAAAATCGATTTGGTTTTGACTGCCACAAGTTTTCAGATTCGAGAGAGGGGGAGACAGAGCGAGAAGGAAGAGTTGGCAACAGTCTTTTGACTTACCTTCCTTCTCCCTCTTTCTCTCTAGACGTGAAGAAAGGCCTTGCTCGCCCTTCACGTCTTCCAAAATTTGTCTTTTACCATATCATTTCAACGAACAGTTCGCTTGGAGACAACAGTGGAAGAGATTTTTCCAGGTGTACGACAGGCAAGAAAATATCGGGGCCTTGACTAGCGGAGGTAGTGATACATCTGTGCGGGGCTGGGCGGGCTTCAGAATCTAGAGTGGCAAGAAGCAGAAGCAAGAAGATATACTAGAAATTAGATGAATTGAATCCTGGCTTCAAGATTGTTGTGGAAGAAAATGGGAAAAGGATAGTAAGTAACTAAGAAATATTGGGGTGGGGAAGGGGAGATTGAAACATCGTATGTGGAGGAGGAGCTGTAGCAGCCAGCAAAGATGCTGGAAGGCTTAATGGTTCATGCAAGGCATCTGCCCTCTTTAATAGCAAAACCCTCCTTCACTTCTTCTGGTCTCTCTCTTGCGCCGCCGAGACGTGTTGAAGACCGTCACAACAGCCAAACGGCGGAAACAGATCTGGAGAAAATGAGAGAAGAGGAATTTGAGAGTAAATCCGGAAGCGAAAACATCGAGGGAGCATCTGGAGAAGAGCAGGATGTGGATCCACGGTCACGCAAAAAACGATACCATCGGCATACCCAGCATCAGATTCAAGAGTTGGAGATGTTCTTTCGAGAGTGTCCGCATCCTGATGATAAACAGAGGCAGGAACTCAGTCGGCGACTTTGCCTCGAGCCACGCCAAATTAAATTCTGGTTCCAGAACAAACGTACTCAAATGAAGGCTCACCATGAACGGCAGGATAATATTATGCTAAAATCAGAGAATGAGAAACTTCGTCTGGATAACATGAGGTACCGAGATGCTTTGAGCAGCATAACATGTCCCAACTGTGGAGGTCCGGCCACATTGGGAGAGATTTCATTTGATGAGCAGCAGTTACGTATCGAGAACGCCAAGCTCAGAGAAGAGGTCGAACGCATTTCGGGCATTGCTGCAAAATACGTGGGGAAGCCTCTGCCATCTCCAGTAACACGTCTTAATACACTTTCTTCATCGACATTAGATCTGGGTAGCGGAGGAGGGTCATCGTGCCTGGGAGATTTTCATGGAACAGCTGGCGGGGATATCGTTAGCAGGCACGTTGGGTTGGCAGAGTCCGAGAAGCCAATGGTGGTAGAGGTAGCTGTGGCAGCTATGGAGGAGTTAGTCCAAATGGCACAAGTGTGCGACCCTCTTTGGACTACCCGTTTTGAGGATGGATGTGAAATTCTGTGCCAGGAGGAGTACACTCGAATGTTTCCTCGTGGCAACTTAGGTTCGACTTCTAGATCGCCCTATGGAGTGAAGACACAAGAAGCGTCTCGTGATACTGCCCTTGTGATCATGAGCTCAATCAATCTGGTCGAGACAATGATGGATGTGGTTACGTGGGTTGAACATGTAGAAGTGGACGAGAGAGCTGTGCACCGTATTTACGATAAGTTGGTAAGCAGTGGTATGGCGTTCGGCGCGAAACGGTGGCTATCAACTCTGGAAAGGCAGTGTGAACGTTTGGCCAGTATGCTAGCTTGCAATATACCTGCAAGAGACCTTGGAGTTATATCGAATCCGGAAGGGAGAAGAAGCATGCTTAGTTAGCGGAGCGCGTGACGAATAGTTTCTGTGCTGGTGTGAGTGCCTCTAATGCACACACTTGGACAACTCTTTCTGGTAGCGGTGCTGAAGATGTTCGTGTTATGACTCGCAAGAGCGTAGATGACCCAGGCAGGCCTCCAGGCATTGTCTTAAGCGCAGCAACCTCCTTCTGGCTTCCTGCACCTCCTATGCGAGTCTTTCAATTCCTGCGTGATGAAAACTTGAGGAACGGGTGGGACATTCTATCCAATGGTGGCTTAGTCCAAGAAATGGCGCATATCGCCAACGGTCAAGATCCTGGAAATTGTGTCTCTCTTTTGCGTGTCAACAACTTGAATTCGAATCAGGGTAACATGCTTATTCTCCAGGAGAGCTGCACTGATGTATGTGGCTCTTACGTTATTTACGCTCCCGTTGATATAGTGGCCATGAATGTCGTTCTCAACGGTGGTGATCCCAACTACGTGGCTCTTTTACCATCGGGTTTTGCTATTCTGCCTGATGGCACACAGTCGAGTTTGGGTAGCAGTGTCATTAATGATAAAATCTCCAGTGGCTCGTTGTTGACTGTGGCTTTCCAGATTTTAGTCGACTCTGTGCCAACAGCAAAGCTATCTTTAGGGTCGGTTGCAACTGTCAACAGCCTCATATCCTGTACAGTTGACCGAATTAAGACGGCTCTGAACTGTGAAAACGCTTGATTGAACAAGGGCCCTCTTGTTTCTCGTTTCGTTTTCGTGTGTGTGAAATGTCAAAACGCTGTCTTTTGCTTGGCATTTCACCCACAAAAATAAACTGAAACTGGATTTCTTACTGTATTCCCTGCGTTAATTTTCCAATGGATAACATTAATAGACTGGTACATATGTATGCTTGACCTAACCCAACACTCTACTATATTAGTGTAATTCATTGACTAATTGCTTGCTTCTGCTGACATT

Ace file of the UniGene sp_v3.0_unigene9046

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	homeobox-leucine zipper protein HDG2 [Arabidopsis thaliana] ref\|NP_849596.1\| homeobox-leucine zipper protein HDG2 [Arabidopsis thaliana] ref\|NP_001184911.1\| homeobox-leucine zipper protein HDG2 [Arabidopsis thaliana] sp\|Q94C37.1\|HDG2_ARATH RecName: Full=H	-	-	0.0	75%
FL-Next	sp=Homeobox-leucine zipper protein HDG2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Sma3	Homeobox protein, putative	-	-	9.594e-18	-

Source	Gene names
Sma3	ANL2; AT1G05230; ATHB10; ATML1; At1g05230; At1g17920; At1g73360; At1g79840; At2g32370; At3g61150; At4g00730; At4g04890; At4g21750; At5g52170; BIP1A; F17L22.210; F17P19.7; F19K16.20; F6N23.10; GL2; GL2-1; GL2-2; GL2-4; GL2-5; GL2-6; GL2-7; GL2-8; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	epidermal cell differentiation	GO:0009913	Biological Process	-
Sma3	negative regulation of trichoblast fate specification	GO:0010062	Biological Process	-
Sma3	trichome branching	GO:0010091	Biological Process	-
Sma3	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Lipid-binding START	IPR002913	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G05230.1	HDG2 homeodomain GLABROUS 2 chr1:1513388-1517024 REVERSE LENGTH=721	79%
RefSeq	Arabidopsis thaliana	NP_001184911.1	homeobox-leucine zipper protein HDG2 [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002320458.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q94C37

Fln msg: Separated hits, possible frame ERROR between 1840 and 1858, your sequence is shorter than subject: 654 - 721

Fln protein: MLEGLMVHARHLPSLIAKPSFTSSGLSLAPPRRVEDRHNSQTAETDLEKMREEEFESKSGSENIEGASGEEQDVDPRSRKKRYHRHTQHQIQELEMFFRECPHPDDKQRQELSRRLCLEPRQIKFWFQNKRTQMKAHHERQDNIMLKSENEKLRLDNMRYRDALSSITCPNCGGPATLGEISFDEQQLRIENAKLREEVERISGIAAKYVGKPLPSPVTRLNTLSSSTLDLGSGGGSSCLGDFHGTAGGDIVSRHVGLAESEKPMVVEVAVAAMEELVQMAQVCDPLWTTRFEDGCEILCQEEYTRMFPRGNLGSTSRSPYGVKTQEASRDTALVIMSSINLVETMMDVVTWVEHVEVDERAVHRIYDKLVSSGMAFGAKRWLSTLERQCERLASMLACNIPARDLGVISNPExxxxxxxLAERVTNSFCAGVSASNAHTWTTLSGSGAEDVRVMTRKSVDDPGRPPGIVLSAATSFWLPAPPMRVFQFLRDENLRNGWDILSNGGLVQEMAHIANGQDPGNCVSLLRVNNLNSNQGNMLILQESCTDVCGSYVIYAPVDIVAMNVVLNGGDPNYVALLPSGFAILPDGTQSSLGSSVINDKISSGSLLTVAFQILVDSVPTAKLSLGSVATVNSLISCTVDRIKTALNCENA*

Protein Length: 655

Fln nts: ATGGGGCTCTGTAACTCCTCCTTTCCCCTCCTCTCCTTTTATCAGATGTTTCCATAATTATGGGGACTGCAAGTCTTTTAGACTCACACTCACGCCCGGGCTTGTAAAAATCGATTTGGTTTTGACTGCCACAAGTTTTCAGATTCGAGAGAGGGGGAGACAGAGCGAGAAGGAAGAGTTGGCAACAGTCTTTTGACTTACCTTCCTTCTCCCTCTTTCTCTCTAGACGTGAAGAAAGGCCTTGCTCGCCCTTCACGTCTTCCAAAATTTGTCTTTTACCATATCATTTCAACGAACAGTTCGCTTGGAGACAACAGTGGAAGAGATTTTTCCAGGTGTACGACAGGCAAGAAAATATCGGGGCCTTGACTAGCGGAGGTAGTGATACATCTGTGCGGGGCTGGGCGGGCTTCAGAATCTAGAGTGGCAAGAAGCAGAAGCAAGAAGATATACTAGAAATTAGATGAATTGAATCCTGGCTTCAAGATTGTTGTGGAAGAAAATGGGAAAAGGATAGTAAGTAACTAAGAAATATTGGGGTGGGGAAGGGGAGATTGAAACATCGTATGTGGAGGAGGAGCTGTAGCAGCCAGCAAAG_-_ATGCTGGAAGGCTTAATGGTTCATGCAAGGCATCTGCCCTCTTTAATAGCAAAACCCTCCTTCACTTCTTCTGGTCTCTCTCTTGCGCCGCCGAGACGTGTTGAAGACCGTCACAACAGCCAAACGGCGGAAACAGATCTGGAGAAAATGAGAGAAGAGGAATTTGAGAGTAAATCCGGAAGCGAAAACATCGAGGGAGCATCTGGAGAAGAGCAGGATGTGGATCCACGGTCACGCAAAAAACGATACCATCGGCATACCCAGCATCAGATTCAAGAGTTGGAGATGTTCTTTCGAGAGTGTCCGCATCCTGATGATAAACAGAGGCAGGAACTCAGTCGGCGACTTTGCCTCGAGCCACGCCAAATTAAATTCTGGTTCCAGAACAAACGTACTCAAATGAAGGCTCACCATGAACGGCAGGATAATATTATGCTAAAATCAGAGAATGAGAAACTTCGTCTGGATAACATGAGGTACCGAGATGCTTTGAGCAGCATAACATGTCCCAACTGTGGAGGTCCGGCCACATTGGGAGAGATTTCATTTGATGAGCAGCAGTTACGTATCGAGAACGCCAAGCTCAGAGAAGAGGTCGAACGCATTTCGGGCATTGCTGCAAAATACGTGGGGAAGCCTCTGCCATCTCCAGTAACACGTCTTAATACACTTTCTTCATCGACATTAGATCTGGGTAGCGGAGGAGGGTCATCGTGCCTGGGAGATTTTCATGGAACAGCTGGCGGGGATATCGTTAGCAGGCACGTTGGGTTGGCAGAGTCCGAGAAGCCAATGGTGGTAGAGGTAGCTGTGGCAGCTATGGAGGAGTTAGTCCAAATGGCACAAGTGTGCGACCCTCTTTGGACTACCCGTTTTGAGGATGGATGTGAAATTCTGTGCCAGGAGGAGTACACTCGAATGTTTCCTCGTGGCAACTTAGGTTCGACTTCTAGATCGCCCTATGGAGTGAAGACACAAGAAGCGTCTCGTGATACTGCCCTTGTGATCATGAGCTCAATCAATCTGGTCGAGACAATGATGGATGTGGTTACGTGGGTTGAACATGTAGAAGTGGACGAGAGAGCTGTGCACCGTATTTACGATAAGTTGGTAAGCAGTGGTATGGCGTTCGGCGCGAAACGGTGGCTATCAACTCTGGAAAGGCAGTGTGAACGTTTGGCCAGTATGCTAGCTTGCAATATACCTGCAAGAGACCTTGGAGTTATATCGAATCCGGAAGGxxxxxxxxxxxxxxxxxxGTTAGCGGAGCGCGTGACGAATAGTTTCTGTGCTGGTGTGAGTGCCTCTAATGCACACACTTGGACAACTCTTTCTGGTAGCGGTGCTGAAGATGTTCGTGTTATGACTCGCAAGAGCGTAGATGACCCAGGCAGGCCTCCAGGCATTGTCTTAAGCGCAGCAACCTCCTTCTGGCTTCCTGCACCTCCTATGCGAGTCTTTCAATTCCTGCGTGATGAAAACTTGAGGAACGGGTGGGACATTCTATCCAATGGTGGCTTAGTCCAAGAAATGGCGCATATCGCCAACGGTCAAGATCCTGGAAATTGTGTCTCTCTTTTGCGTGTCAACAACTTGAATTCGAATCAGGGTAACATGCTTATTCTCCAGGAGAGCTGCACTGATGTATGTGGCTCTTACGTTATTTACGCTCCCGTTGATATAGTGGCCATGAATGTCGTTCTCAACGGTGGTGATCCCAACTACGTGGCTCTTTTACCATCGGGTTTTGCTATTCTGCCTGATGGCACACAGTCGAGTTTGGGTAGCAGTGTCATTAATGATAAAATCTCCAGTGGCTCGTTGTTGACTGTGGCTTTCCAGATTTTAGTCGACTCTGTGCCAACAGCAAAGCTATCTTTAGGGTCGGTTGCAACTGTCAACAGCCTCATATCCTGTACAGTTGACCGAATTAAGACGGCTCTGAACTGTGAAAACGCTTGA___TTGAACAAGGGCCCTCTTGTTTCTCGTTTCGTTTTCGTGTGTGTGAAATGTCAAAACGCTGTCTTTTGCTTGGCATTTCACCCACAAAAATAAACTGAAACTGGATTTCTTACTGTATTCCCTGCGTTAATTTTCCAATGGATAACATTAATAGACTGGTACATATGTATGCTTGACCTAACCCAACACTCTACTATATTAGTGTAATTCATTGACTAATTGCTTGCTTCTGCTGACATT

Fln Alignment:

Contig9046___DRHNSQTAETDLEK-MREEEFES---KSGSENIEGASGEEQDVDPRSRKKRYHRHTQHQIQELEMFFRECPHPDDKQRQELSRRLCLEPRQIKFWFQNKRTQMKAHHERQDNIMLKSENEKLRLDNMRYRDALSSITCPNCGGPATLGEISFDEQQLRIENAKLREEVERISGIAAKYVGKPLPS-PVTRXXXXXXXXXXXXXXXXXXXXXXFHGTAGGDIVSRHVGLAESEKPXXXXXXXXXXXXXXXXXQVCDPLWTTRFEDGCEILCQEEYTRMFPRGNLGSTSRSPYGVKTQEASRDTALVIMSSINLVETMMDVVTWxxxxxxLAERVTNSFCAGVSASNAHTWTTLSGSGAEDVRVMTRKSVDDPGRPPGIVLSAATSFWLPAPPMRVFQFLRDENLRNGWDILSNGGLVQEMAHIANGQDPGXXXXXXXXXXXXXXQGNMLILQESCTDVCGSYVIYAPVDIVAMNVVLNGGDPNYVALLPSGFAILPDGTQSSLGSSVINDKISSGSLLTVAFQILVDSVPTAKLSLGSVATVNSLISCTVDRIKTALNCENA
Q94C37______________NNHNYNHEDNNNEGFLRDDEFDSPNTKSGSENQEGGSGNDQDPLHPNKKKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQVKFWFQNKRTQMKNHHERHENSHLRAENEKLRNDNLRYREALANASCPNCGGPTAIGEMSFDEHQLRLENARLREEIDRISAIAAKYVGKPVSNYPLMSPPPLPPRPLELAMGNIGGEA---YGNNPNDLLKSITAPTESDKPVIIDLSVAAMEELMRMVQVDEPLWKSL------VLDEEEYARTFPRG----IGPRPAGYRS-EASRESAVVIMNHVNIVEILMDVNQWxxxxxxLAERMVISFCAGVSASTAHTWTTLSGTGAEDVRVMTRKSVDDPGRPPGIVLSAATSFWIPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNIVLNGGDPDYVALLPSGFAILPDGNANSGAPGG-----DGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASMSCETA

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
1077			85	14	0.993533
1153		14		85	0.993533
1355	25		75		0.996473
1655	33			66	0.997452
1656	33			66	0.997452
1657	66	33			0.997452
1659	33		66		0.997452
1660	33			66	0.997452
1661			66	33	0.997452
1665		33		66	0.997452
1666	33		66		0.997452
1668	66		33		0.997452
1669		66		33	0.997452
1674	66			33	0.997452
1675			66	33	0.997452
1676	66			33	0.997452
1677	66	33			0.997452
1732	33		66		0.997452
2247	25	75			0.996473
2250	75		25		0.996473
2251			25	75	0.996473
2304			14	85	0.993533
2466		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain